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Current Database

  • EMDB [565]

Current status

  • REL [565]

Sample type

  • Protein [479]
  • Complex [282]
  • Ligand [209]
  • Sample [187]
  • Virus [166]
  • RNA [57]
  • Cellular component [42]
  • DNA [18]
  • Cell [3]

Organism

  • Homo sapiens [116]
  • Synthetic construct [49]
  • Adeno-associated virus [44]
  • Saccharomyces cerevisiae [43]
  • Escherichia coli [40]
  • Parengyodontium album [22]
  • Bos taurus [16]
  • Mus musculus [15]
  • Oryctolagus cuniculus [15]
  • Triticum aestivum [9]
  • Rattus norvegicus [8]
  • Adeno-associated dependoparvovirus a [8]
  • Hepacivirus c [7]
  • Sus scrofa [7]
  • Enterobacteria phage t4 [6]
  • Adeno-associated dependoparvovirus a [6]
  • Squamate dependoparvovirus 1 [6]
  • Saccharomyces cerevisiae [6]
  • Bufavirus-1 [5]
  • Adeno-associated dependoparvovirus a [5]
  • Enterovirus d [5]
  • Triticum sp. [5]
  • Primate bocaparvovirus 2 [5]
  • Canis lupus [5]
  • Human mastadenovirus c [4]
  • Bacillus thuringiensis [4]
  • (no species) [4]
  • Adeno-associated dependoparvovirus a [4]
  • Thermus thermophilus [4]
  • Drosophila melanogaster [4]
  • Unidentified adenovirus [3]
  • Bacillus phage phi29 [3]
  • Primate erythroparvovirus 1 [3]
  • Bacillus subtilis [3]
  • Methylococcus capsulatus [3]
  • Myxococcus xanthus [3]
  • Solenopsis invicta-associated densovirus [3]
  • Sulfolobus acidocaldarius [3]
  • Kelp fly virus [3]
  • Rodent protoparvovirus 1 [3]
  • Methanococcus maripaludis [3]
  • Dictyostelium discoideum [3]
  • Klebsiella pneumoniae [3]
  • Primate bocaparvovirus 1 [3]
  • Tick-borne encephalitis virus [3]
  • Torpedo marmorata [3]
  • Adeno-associated dependoparvovirus b [3]
  • Gallus gallus [3]
  • Hepatitis b virus [2]
  • Protoparvovirus rodent1 [2]
  • Maize streak virus [2]
  • (no species) [2]
  • Dengue virus [2]
  • Cypovirus 1 [2]
  • Avian coronavirus [2]
  • Escherichia coli [2]
  • Streptococcus pneumoniae [2]
  • Human blood metagenome [2]
  • Adeno-associated dependoparvovirus a [2]
  • Escherichia virus su10 [2]
  • Prevotella copri [2]
  • Methanocaldococcus jannaschii [2]
  • Adeno-associated dependoparvovirus a [2]
  • Adeno-associated dependoparvovirus a [2]
  • Penaeus monodon metallodensovirus [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Human mastadenovirus c [2]
  • Carnivore amdoparvovirus 1 [2]
  • Israeli acute paralysis virus [2]
  • Euglena gracilis [2]
  • Thermococcus kodakarensis [2]
  • Avian dependoparvovirus 1 [2]
  • Bluetongue virus [2]
  • Slow bee paralysis virus [2]
  • Adeno-associated dependoparvovirus a [2]
  • Trypanosoma brucei [2]
  • Shigella flexneri [2]
  • Chiropteran dependoparvovirus 1 [2]
  • Ovis aries [2]
  • Human herpesvirus 1 [1]
  • Human cytomegalovirus [1]
  • Bacillus phage sf6 [1]
  • Spiromicrovirus spv4 [1]
  • Methylotuvimicrobium alcaliphilum [1]
  • Rotavirus a [1]
  • Sindbis virus [1]
  • Mycobacterium xenopi [1]
  • Haloarcula hispanica icosahedral virus 2 [1]
  • Acidipropionibacterium acidipropionici [1]
  • Coxsackievirus [1]
  • Enterovirus c [1]
  • Bufavirus-2 [1]
  • Quasibacillus thermotolerans [1]
  • Tobacco mosaic virus [1]
  • Neisseria meningitidis [1]
  • Dengue virus [1]
  • Staphylococcus epidermidis [1]
  • Enterococcus faecalis [1]
  • Pyrobaculum aerophilum [1]
  • Bufavirus-3 [1]

EM Method

  • Single-particle [425]
  • Electron Crystallography [112]
  • Helical reconstruction [28]

Resolution

  • < 2Å [56]
  • ≥ 2Å and < 3Å [150]
  • ≥ 3Å and < 4Å [135]
  • ≥ 4Å and < 5Å [19]
  • ≥ 5Å and < 6Å [11]
  • ≥ 6Å and < 8Å [46]
  • ≥ 8Å and < 12Å [49]
  • ≥ 12Å and < 16Å [28]
  • ≥ 16Å and < 20Å [19]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [9]

Model molecular weight

  • 0-50 kDa [78]
  • 50-100 kDa [17]
  • 100-250 kDa [65]
  • 250-500 kDa [60]
  • 500-1000 kDa [26]
  • 1-2 MDa [35]
  • 2-5 MDa [110]
  • 5-10 MDa [22]
  • > 10 MDa [9]

Release Date

  • 2026 [15]
  • 2025 [48]
  • 2024 [39]
  • 2023 [27]
  • 2022 [53]
  • 2021 [47]
  • 2020 [27]
  • 2019 [32]
  • 2018 [60]
  • 2017 [13]
  • 2016 [18]
  • 2015 [20]
  • 2014 [14]
  • 2013 [10]
  • 2012 [12]
  • 2011 [15]
  • 2010 [26]
  • 2009 [20]
  • 2008 [8]
  • 2007 [19]
  • 2006 [20]
  • 2005 [13]
  • 2004 [9]

Author by name

  • Mckenna R [107]
  • Chipman P [101]
  • Mietzsch M [91]
  • Gonen T [82]
  • Hattne J [69]
  • Agbandje-mckenna M [56]
  • Martynowycz MW [54]
  • Rodriguez JA [52]
  • Beckmann R [47]
  • Shi D [41]
  • Berninghausen O [39]
  • Hsi J [37]
  • Mielke T [37]
  • Sawaya MR [32]
  • Bhattacharya N [30]
  • Cascio D [29]
  • Becker T [27]
  • Zee CT [27]
  • Gallagher-jones M [25]
  • Glynn C [25]
  • Huiskonen JT [25]
  • Sousa D [24]
  • Armache JP [23]
  • Eisenberg DS [22]
  • Gilbert RJ [22]
  • Nelson AR [22]
  • Zachary J [22]
  • Alexander IE [21]
  • Farrar MA [21]
  • Ghanem M [21]
  • Huang AM [21]
  • Khandekar N [21]
  • Logan GJ [21]
  • Potts L [21]
  • Smith NJ [21]
  • Gilbert RJC [20]
  • Saibil HR [20]
  • Stuart DI [20]
  • Wilson DN [20]
  • Soderlund-venermo M [19]
  • Chipman PR [18]
  • Hull JA [18]
  • Itoh Y [18]
  • Rossmann MG [18]
  • Bennett A [17]
  • Fujiyoshi Y [17]
  • Reyes FE [17]
  • Amunts A [16]
  • Bhushan S [15]
  • Fuzik T [15]
  • Plevka P [15]
  • Yu JC [15]
  • Anger AM [13]
  • Clare DK [13]
  • Jarasch A [13]
  • Khawaja A [13]
  • Rorbach J [13]
  • Tani K [13]
  • Zhang X [13]
  • Armache J-P [12]
  • Atanassov I [12]
  • Boyer DR [12]
  • Cipullo M [12]
  • Laptev I [12]
  • Luo M [12]
  • Penzes JJ [12]
  • Rodriguez J [12]
  • Sergiev P [12]
  • Tijssen P [12]
  • Bennett AD [11]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Huang R [11]
  • Jensen GJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Orlova EV [11]
  • Stoltz BM [11]
  • Wang J [11]
  • Zeher A [11]
  • Zhang Y [11]
  • Zhao W [11]
  • Fulton T [10]
  • Hendrickson WA [10]
  • Jimenez Ybargollin A [10]
  • Schulten K [10]
  • Seidler P [10]
  • Spahn CMT [10]
  • Abe K [9]
  • Andreas MP [9]
  • Beatrix B [9]
  • Giessen TW [9]
  • Gumbart J [9]
  • Schoehn G [9]
  • Thomm M [9]
  • Villa E [9]
  • De La Cruz Mj [9]
  • Bennett AB [8]
  • Calero G [8]
  • Chen S [8]

Author by ORCID

  • Chipman P [97]
  • Mckenna R [84]
  • Mietzsch M [76]
  • Hattne J [68]
  • Martynowycz MW [54]
  • Sawaya MR [31]
  • Hsi J [28]
  • Gallagher-jones M [25]
  • Huiskonen JT [23]
  • Armache JP [22]
  • Logan GJ [21]
  • Farrar MA [21]
  • Alexander IE [21]
  • Agbandje-mckenna M [21]
  • Smith NJ [21]
  • Potts L [21]
  • Stuart DI [19]
  • Itoh Y [18]
  • Wilson DN [18]
  • Chipman PR [17]
  • Fuzik T [15]
  • Bhushan S [15]
  • Plevka P [15]
  • Rorbach J [13]
  • Amunts A [13]
  • Khawaja A [13]
  • Tani K [13]
  • Atanassov I [12]
  • Sergiev P [12]
  • Gilbert RJ [12]
  • Laptev I [12]
  • Clare DK [12]
  • Fujiyoshi Y [12]
  • Eisenberg DS [12]
  • Penzes JJ [11]
  • Fulton TJ [11]
  • Orlova EV [11]
  • Jimenez Ybargollin A [10]
  • Soderlund-venermo M [10]
  • Schoehn G [9]
  • De La Cruz Mj [9]
  • Gonen T [9]
  • Villa E [9]
  • Loerke J [8]
  • Yang T [8]
  • Daneshparvar N [8]
  • Zhang Y [8]
  • Kittredge A [8]
  • Owji AP [8]
  • Hendrickson WA [8]
  • Fucini P [8]
  • Abe K [8]
  • Bennett A [8]
  • Giessen TW [7]
  • Sonnen AF [7]
  • Burger J [7]
  • Muller CW [7]
  • Heilbronn R [6]
  • Haslbeck M [6]
  • Robinson CV [6]
  • Rodriguez JA [6]
  • Xie J [6]
  • Kostyuchenko VA [6]
  • Mudrick HE [6]
  • Bhandari J [6]
  • Franzmann TM [6]
  • Lu J [6]
  • Lu SC [6]
  • Von Der Haar T [6]
  • Zeher A [6]
  • Barry MA [6]
  • Buchner J [6]
  • Hemsath JR [6]
  • Funes S [6]
  • Bakkes PJ [6]
  • Dabrowski M [6]
  • Reddy VS [6]
  • Andres FGM [6]
  • Scheerer P [5]
  • Vorlander MK [5]
  • Hagen WJH [5]
  • Koo CW [5]
  • Connell S [5]
  • Amos LA [5]
  • Rosenzweig AC [5]
  • Chapman MS [5]
  • Puno MR [5]
  • Sprink T [5]
  • He Y [5]
  • Weick EM [5]
  • Froehlich T [5]
  • Pridal A [5]
  • Farr GW [5]
  • Tucci FJ [5]
  • Hilal T [5]
  • Moravcova J [5]
  • Lima CD [5]
  • Wang J [5]
  • Pool MR [5]
  • Zinder JC [5]

Journal

  • NAT COMMUN [74]
  • J VIROL [57]
  • STRUCTURE [55]
  • NATURE [53]
  • PNAS [34]
  • NAT STRUCT MOL BIOL [31]
  • VIRUSES [31]
  • MOL CELL [21]
  • TO BE PUBLISHED [21]
  • CELL [20]
  • SCIENCE [18]
  • EMBO J [17]
  • ELIFE [14]
  • J MOL BIOL [12]
  • ACS CENT SCI [11]
  • J BIOL CHEM [8]
  • NAT METHODS [8]
  • J STRUCT BIOL [7]
  • NUCLEIC ACIDS RES [7]
  • BIORXIV [6]
  • SCI REP [6]
  • J AM CHEM SOC [5]
  • SCI ADV [4]
  • VIROLOGY [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • CELL REP [3]
  • COMMUN BIOL [3]
  • J STRUCT BIOL X [3]
  • MOL THER METHODS CLIN DEV [3]
  • ACS NANO [2]
  • EXP.MOL.MED. [2]
  • IUCRJ [2]
  • MICROSCOPY [2]
  • NAT CHEM BIOL [2]
  • PLOS BIOL [2]
  • ACTA CRYST. [1]
  • ADV SCI [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOCHIM BIOPHYS ACTA [1]
  • BIOMACROMOLECULES [1]
  • BLOOD [1]
  • CELL HOST MICROBE [1]
  • CELL RES [1]
  • EMBO REP [1]
  • J APPL CRYSTALLOGR [1]
  • LIFE SCI ALLIANCE [1]
  • MEDCOMM (2020) [1]
  • MICROORGANISMS [1]
  • MOL MICROBIOL [1]
  • MOL THER [1]
  • NAT CHEM [1]
  • PLOS PATHOG [1]
  • RNA [1]

Software

  • RELION [83]
  • SPIDER [64]
  • CRYOSPARC [60]
  • CISTEM [41]
  • MRC [22]
  • URO [22]
  • MOLREP [17]
  • AIMLESS [16]
  • POINTLESS [16]
  • AUTO3DEM [14]
  • PHENIX [14]
  • GCTF [12]
  • GAP [11]
  • FREALIGN [10]
  • IMAGIC [10]
  • CHIMERA [9]
  • UCSF CHIMERA [9]
  • EMAN [7]
  • SITUS [7]
  • EMFIT [6]
  • PHASER [6]
  • SHELXD [6]
  • CHIMERA, COOT, MDFF [5]
  • EMPFT, POR, P3DR [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
  • XSCALE [5]
  • CTFFIND [4]
  • MDFF [4]
  • SCALEPACK [4]
  • SPIDER AND GAP [4]
  • SPIDER, SIGNATURE, MAPPOS [4]
  • IMAGIC V [3]
  • PFT EM3DR [3]
  • PHOELIX [3]
  • SPIDER, SPARX [3]
  • COOT [2]
  • DIREX [2]
  • EMPFT, EM3DR [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • MOLECULAR DYNAMICS BASED FLEXIBLE FITTING MDFF [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • REFMAC [2]
  • SPIDER, IMAGIC [2]
  • SPIDER, XMIPP [2]
  • XDS [2]
  • 2DX [1]
  • BUSTER-TNT [1]
  • CCP4 [1]
  • CHIMERA AND COOT [1]
  • CHIMERA, COOT [1]
  • CNS [1]
  • CRYOLO [1]
  • ELITE3D, FREALIGN [1]
  • EM3DR [1]
  • EMBL ICOSAHEDRAL [1]
  • EMFIT SR5 [1]
  • EOS [1]
  • FLEX-EM [1]
  • FOLDHUNTER AND HOMEMADE SOFTWARE [1]
  • GROMACS [1]
  • HELICON [1]
  • IHRSR [1]
  • IMAGE2000 [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5, SPIDER [1]
  • IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
  • MOD-EM AND FLEX-EM [1]
  • MRC AND SPIDER [1]
  • MRC, CCP4, HOMEMADE [1]
  • O [1]
  • O, NAMD, EOS [1]
  • PARALLELIZED EMPFT, EM3DR [1]
  • PFT P3DR POR [1]
  • PURDUE SUITE [1]
  • SITUS AND EMFIT [1]
  • SITUS, COLORES [1]
  • SITUS, URO [1]
  • SPIDER AND IMAGIC [1]
  • SPIDER AND MRC [1]
  • SPIDER IMAGIC [1]
  • SPIDER-LIKE [1]
  • STAR, FISH, SPIDER [1]
  • STARFISH, SPIDER [1]
  • URO SITUS [1]

Microscope

  • FEI TITAN KRIOS [228]
  • FEI TECNAI F20 [82]
  • TFS KRIOS [60]
  • FEI TALOS ARCTICA [38]
  • FEI POLARA 300 [27]
  • FEI/PHILIPS CM200FEG [27]
  • FEI TECNAI F30 [17]
  • FEI/PHILIPS CM300FEG/T [13]
  • JEOL KYOTO-3000SFF [13]
  • FEI TECNAI 12 [12]
  • FEI TECNAI 20 [6]
  • FEI/PHILIPS CM200T [6]
  • JEOL 2010F [5]
  • JEOL 3000SFF [5]
  • JEOL 2100F [4]
  • JEOL CRYO ARM 300 [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG/UT [3]
  • TFS GLACIOS [3]
  • FEI TITAN [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI EF2000 [1]
  • JEOL 1200EXII [1]
  • JEOL 4000EX [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [529]
  • LAB6 [15]
  • OTHER [12]
  • TUNGSTEN HAIRPIN [9]

Film or detector model

  • KODAK SO-163 FILM [124]
  • GATAN K2 SUMMIT 4K X 4K [99]
  • TVIPS TEMCAM-F416 4K X 4K [67]
  • GATAN K3 6K X 4K [65]
  • FEI FALCON IV 4K X 4K [36]
  • FEI CETA 4K X 4K [29]
  • GATAN K3 BIOQUANTUM 6K X 4K [28]
  • FEI FALCON II 4K X 4K [20]
  • DIRECT ELECTRON DE-64 8K X 8K [12]
  • FEI FALCON III 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • GATAN ULTRASCAN 4000 4K X 4K [9]
  • GENERIC GATAN 4K X 4K [8]
  • FEI EAGLE 4K X 4K [7]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • GATAN K2 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI EAGLE 2K X 2K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • GENERIC CCD [1]
  • GENERIC CCD 2K X 2K [1]
  • GENERIC FILM [1]
  • GENERIC GATAN [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [557]
  • UniProt [354]
  • PDBe-Kb [333]
  • AlphaFold DB [275]
  • InterPro [262]
  • Gene Ontology [256]
  • ChEBI [187]
  • ChEMBL [169]
  • DrugBank [168]
  • Pfam [132]
  • Complex Portal [64]
  • SCOP2 [24]
  • EMPIAR [23]
  • CATH [20]
Sort by: Download
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EMD-65999
Download Map
3D View
Cryo-EM structure of GPR84-Gi complex with DL-175
Composite map
CryoEM
Release date: July 1, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9wik
Q-score: 0.485
Similar entry percentile: 62%

Suzuki S, Tran DP, Nishikawa K, Kitao A, Fujiyoshi Y

Nat Commun (2026) [ Pubmed: 42463693 DOI: doi:10.1038/s41467-026-75728-9 ]

EMD-74892
Download Map
3D View
Quasibacillus thermotolerans T 4 encapsulin pore mutant variant Glass 9
CryoEM
Release date: July 1, 2026
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9zvv
Q-score: 0.646
Similar entry percentile: 87%

Siddiquee R, Lie F, Szyszka TN, Loustau A, Andreas MP, Giessen TW, Lau YH

bioRxiv (2026) [ DOI: doi:10.64898/2026.01.12.698938 Pubmed: 41648261 ]

EMD-75106
Download Map
3D View
Thermosynechococcus vestitus BP-1 Photosystem I Complexed with Platinum Nanoparticles
CryoEM
Release date: July 1, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 10eg
Q-score: 0.51
Similar entry percentile: 78%

Emerson MD, Damaraju SNS, Short AH, Alvord ZB, Palmer ZA, Mehra HS, Brininger CM, Vermaas JV, Utschig LM, Gisriel CJ

bioRxiv (2026) [ Pubmed: 41929101 DOI: doi:10.64898/2026.03.23.713776 ]

EMD-74998
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3D View
Cryo-EM structure of F-actin in the ADP state
CryoEM
Release date: June 24, 2026
Resolution: 2.06 Å
EM Method: Helical reconstruction
Fitted PDBs: 9zzi
Q-score: 0.738
Similar entry percentile: 93%

Brotzman SB, Palmer NJ, Boczkowska M, Dominguez R

Nat Commun (2026) 17 [ Pubmed: 42477379 DOI: doi:10.1038/s41467-026-74810-6 ]

EMD-65360
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3D View
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
CryoEM
Release date: June 17, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9vue
Q-score: 0.408
Similar entry percentile: 53%

Peng H, Guo Z, Wang WL, Yin D, Zou S, Asbell T, Ullman BR, Thakar M, Zhang F, Hong SY, Rao AVS, Wang K, Zhang S, Wu Z, Li X, Kendra AA, Margolis SS, Matsui WH, Gocke CB, Mao Y, Liu JO

Angew Chem Int Ed Engl (2025) 64 pp. e202500288-e202500288 [ DOI: doi:10.1002/anie.202500288 Pubmed: 40960209 ]

EMD-65381
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Cryo-EM structure of SecM-arrested 70S ribosome with YheS
Composite map
CryoEM
Release date: June 17, 2026
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 9vvi
Q-score: 0.573
Similar entry percentile: 83%

Iso K, Ikeda T, Yamasaki K, Ando Y, Sano FK, Furuta T, Taguchi H, Nureki O, Chadani Y, Itoh Y

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-72863-1 Pubmed: 42265116 ]

EMD-67339
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3D View
Cryo-EM structure of SecM-arrested 70S ribosome short SecM
CryoEM
Release date: June 17, 2026
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9xwo
Q-score: 0.556
Similar entry percentile: 76%

Iso K, Ikeda T, Yamasaki K, Ando Y, Sano FK, Furuta T, Taguchi H, Nureki O, Chadani Y, Itoh Y

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-72863-1 Pubmed: 42265116 ]

EMD-53186
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3D View
Human Mortalin mitochondrial Hsp70 in complex with wild-type GrpE1
CryoEM
Release date: June 10, 2026
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 9qid
Q-score: 0.469
Similar entry percentile: 26%

Havalova H, Ondrovicova G, Pinkas M, Bauer JA, Kutejova E, Pevala V

To Be Published

EMD-53191
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3D View
Human Mortalin mitochondrial Hsp70 in complex with GrpE1 phosphorylated at Ser-47
CryoEM
Release date: June 10, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9qin
Q-score: 0.456
Similar entry percentile: 21%

Havalova H, Ondrovicova G, Pinkas M, Bauer JA, Kutejova E, Pevala V

To Be Published

EMD-68620
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3D View
Human KCNQ3-CaM in apo state
CryoEM
Release date: June 3, 2026
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 22rj
Q-score: 0.428
Similar entry percentile: 17%

Cheng XY, Wan SY, Jiang DX, Zhang HY, Hu B, Hou PP, Zhang J

To Be Published

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Current Database

  • EMDB [565]

Current status

  • REL [565]

Sample type

  • Protein [479]
  • Complex [282]
  • Ligand [209]
  • Sample [187]
  • Virus [166]
  • RNA [57]
  • Cellular component [42]
  • DNA [18]
  • Cell [3]

Organism

  • Homo sapiens [116]
  • Synthetic construct [49]
  • Adeno-associated virus [44]
  • Saccharomyces cerevisiae [43]
  • Escherichia coli [40]
  • Parengyodontium album [22]
  • Bos taurus [16]
  • Mus musculus [15]
  • Oryctolagus cuniculus [15]
  • Triticum aestivum [9]
  • Rattus norvegicus [8]
  • Adeno-associated dependoparvovirus a [8]
  • Hepacivirus c [7]
  • Sus scrofa [7]
  • Enterobacteria phage t4 [6]
  • Adeno-associated dependoparvovirus a [6]
  • Squamate dependoparvovirus 1 [6]
  • Saccharomyces cerevisiae [6]
  • Bufavirus-1 [5]
  • Adeno-associated dependoparvovirus a [5]
  • Enterovirus d [5]
  • Triticum sp. [5]
  • Primate bocaparvovirus 2 [5]
  • Canis lupus [5]
  • Human mastadenovirus c [4]
  • Bacillus thuringiensis [4]
  • (no species) [4]
  • Adeno-associated dependoparvovirus a [4]
  • Thermus thermophilus [4]
  • Drosophila melanogaster [4]
  • Unidentified adenovirus [3]
  • Bacillus phage phi29 [3]
  • Primate erythroparvovirus 1 [3]
  • Bacillus subtilis [3]
  • Methylococcus capsulatus [3]
  • Myxococcus xanthus [3]
  • Solenopsis invicta-associated densovirus [3]
  • Sulfolobus acidocaldarius [3]
  • Kelp fly virus [3]
  • Rodent protoparvovirus 1 [3]
  • Methanococcus maripaludis [3]
  • Dictyostelium discoideum [3]
  • Klebsiella pneumoniae [3]
  • Primate bocaparvovirus 1 [3]
  • Tick-borne encephalitis virus [3]
  • Torpedo marmorata [3]
  • Adeno-associated dependoparvovirus b [3]
  • Gallus gallus [3]
  • Hepatitis b virus [2]
  • Protoparvovirus rodent1 [2]
  • Maize streak virus [2]
  • (no species) [2]
  • Dengue virus [2]
  • Cypovirus 1 [2]
  • Avian coronavirus [2]
  • Escherichia coli [2]
  • Streptococcus pneumoniae [2]
  • Human blood metagenome [2]
  • Adeno-associated dependoparvovirus a [2]
  • Escherichia virus su10 [2]
  • Prevotella copri [2]
  • Methanocaldococcus jannaschii [2]
  • Adeno-associated dependoparvovirus a [2]
  • Adeno-associated dependoparvovirus a [2]
  • Penaeus monodon metallodensovirus [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Human mastadenovirus c [2]
  • Carnivore amdoparvovirus 1 [2]
  • Israeli acute paralysis virus [2]
  • Euglena gracilis [2]
  • Thermococcus kodakarensis [2]
  • Avian dependoparvovirus 1 [2]
  • Bluetongue virus [2]
  • Slow bee paralysis virus [2]
  • Adeno-associated dependoparvovirus a [2]
  • Trypanosoma brucei [2]
  • Shigella flexneri [2]
  • Chiropteran dependoparvovirus 1 [2]
  • Ovis aries [2]
  • Human herpesvirus 1 [1]
  • Human cytomegalovirus [1]
  • Bacillus phage sf6 [1]
  • Spiromicrovirus spv4 [1]
  • Methylotuvimicrobium alcaliphilum [1]
  • Rotavirus a [1]
  • Sindbis virus [1]
  • Mycobacterium xenopi [1]
  • Haloarcula hispanica icosahedral virus 2 [1]
  • Acidipropionibacterium acidipropionici [1]
  • Coxsackievirus [1]
  • Enterovirus c [1]
  • Bufavirus-2 [1]
  • Quasibacillus thermotolerans [1]
  • Tobacco mosaic virus [1]
  • Neisseria meningitidis [1]
  • Dengue virus [1]
  • Staphylococcus epidermidis [1]
  • Enterococcus faecalis [1]
  • Pyrobaculum aerophilum [1]
  • Bufavirus-3 [1]

EM Method

  • Single-particle [425]
  • Electron Crystallography [112]
  • Helical reconstruction [28]

Resolution

  • < 2Å [56]
  • ≥ 2Å and < 3Å [150]
  • ≥ 3Å and < 4Å [135]
  • ≥ 4Å and < 5Å [19]
  • ≥ 5Å and < 6Å [11]
  • ≥ 6Å and < 8Å [46]
  • ≥ 8Å and < 12Å [49]
  • ≥ 12Å and < 16Å [28]
  • ≥ 16Å and < 20Å [19]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [9]

Model molecular weight

  • 0-50 kDa [78]
  • 50-100 kDa [17]
  • 100-250 kDa [65]
  • 250-500 kDa [60]
  • 500-1000 kDa [26]
  • 1-2 MDa [35]
  • 2-5 MDa [110]
  • 5-10 MDa [22]
  • > 10 MDa [9]

Release Date

  • 2026 [15]
  • 2025 [48]
  • 2024 [39]
  • 2023 [27]
  • 2022 [53]
  • 2021 [47]
  • 2020 [27]
  • 2019 [32]
  • 2018 [60]
  • 2017 [13]
  • 2016 [18]
  • 2015 [20]
  • 2014 [14]
  • 2013 [10]
  • 2012 [12]
  • 2011 [15]
  • 2010 [26]
  • 2009 [20]
  • 2008 [8]
  • 2007 [19]
  • 2006 [20]
  • 2005 [13]
  • 2004 [9]

Author by name

  • Mckenna R [107]
  • Chipman P [101]
  • Mietzsch M [91]
  • Gonen T [82]
  • Hattne J [69]
  • Agbandje-mckenna M [56]
  • Martynowycz MW [54]
  • Rodriguez JA [52]
  • Beckmann R [47]
  • Shi D [41]
  • Berninghausen O [39]
  • Hsi J [37]
  • Mielke T [37]
  • Sawaya MR [32]
  • Bhattacharya N [30]
  • Cascio D [29]
  • Becker T [27]
  • Zee CT [27]
  • Gallagher-jones M [25]
  • Glynn C [25]
  • Huiskonen JT [25]
  • Sousa D [24]
  • Armache JP [23]
  • Eisenberg DS [22]
  • Gilbert RJ [22]
  • Nelson AR [22]
  • Zachary J [22]
  • Alexander IE [21]
  • Farrar MA [21]
  • Ghanem M [21]
  • Huang AM [21]
  • Khandekar N [21]
  • Logan GJ [21]
  • Potts L [21]
  • Smith NJ [21]
  • Gilbert RJC [20]
  • Saibil HR [20]
  • Stuart DI [20]
  • Wilson DN [20]
  • Soderlund-venermo M [19]
  • Chipman PR [18]
  • Hull JA [18]
  • Itoh Y [18]
  • Rossmann MG [18]
  • Bennett A [17]
  • Fujiyoshi Y [17]
  • Reyes FE [17]
  • Amunts A [16]
  • Bhushan S [15]
  • Fuzik T [15]
  • Plevka P [15]
  • Yu JC [15]
  • Anger AM [13]
  • Clare DK [13]
  • Jarasch A [13]
  • Khawaja A [13]
  • Rorbach J [13]
  • Tani K [13]
  • Zhang X [13]
  • Armache J-P [12]
  • Atanassov I [12]
  • Boyer DR [12]
  • Cipullo M [12]
  • Laptev I [12]
  • Luo M [12]
  • Penzes JJ [12]
  • Rodriguez J [12]
  • Sergiev P [12]
  • Tijssen P [12]
  • Bennett AD [11]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Huang R [11]
  • Jensen GJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Orlova EV [11]
  • Stoltz BM [11]
  • Wang J [11]
  • Zeher A [11]
  • Zhang Y [11]
  • Zhao W [11]
  • Fulton T [10]
  • Hendrickson WA [10]
  • Jimenez Ybargollin A [10]
  • Schulten K [10]
  • Seidler P [10]
  • Spahn CMT [10]
  • Abe K [9]
  • Andreas MP [9]
  • Beatrix B [9]
  • Giessen TW [9]
  • Gumbart J [9]
  • Schoehn G [9]
  • Thomm M [9]
  • Villa E [9]
  • De La Cruz Mj [9]
  • Bennett AB [8]
  • Calero G [8]
  • Chen S [8]

Author by ORCID

  • Chipman P [97]
  • Mckenna R [84]
  • Mietzsch M [76]
  • Hattne J [68]
  • Martynowycz MW [54]
  • Sawaya MR [31]
  • Hsi J [28]
  • Gallagher-jones M [25]
  • Huiskonen JT [23]
  • Armache JP [22]
  • Logan GJ [21]
  • Farrar MA [21]
  • Alexander IE [21]
  • Agbandje-mckenna M [21]
  • Smith NJ [21]
  • Potts L [21]
  • Stuart DI [19]
  • Itoh Y [18]
  • Wilson DN [18]
  • Chipman PR [17]
  • Fuzik T [15]
  • Bhushan S [15]
  • Plevka P [15]
  • Rorbach J [13]
  • Amunts A [13]
  • Khawaja A [13]
  • Tani K [13]
  • Atanassov I [12]
  • Sergiev P [12]
  • Gilbert RJ [12]
  • Laptev I [12]
  • Clare DK [12]
  • Fujiyoshi Y [12]
  • Eisenberg DS [12]
  • Penzes JJ [11]
  • Fulton TJ [11]
  • Orlova EV [11]
  • Jimenez Ybargollin A [10]
  • Soderlund-venermo M [10]
  • Schoehn G [9]
  • De La Cruz Mj [9]
  • Gonen T [9]
  • Villa E [9]
  • Loerke J [8]
  • Yang T [8]
  • Daneshparvar N [8]
  • Zhang Y [8]
  • Kittredge A [8]
  • Owji AP [8]
  • Hendrickson WA [8]
  • Fucini P [8]
  • Abe K [8]
  • Bennett A [8]
  • Giessen TW [7]
  • Sonnen AF [7]
  • Burger J [7]
  • Muller CW [7]
  • Heilbronn R [6]
  • Haslbeck M [6]
  • Robinson CV [6]
  • Rodriguez JA [6]
  • Xie J [6]
  • Kostyuchenko VA [6]
  • Mudrick HE [6]
  • Bhandari J [6]
  • Franzmann TM [6]
  • Lu J [6]
  • Lu SC [6]
  • Von Der Haar T [6]
  • Zeher A [6]
  • Barry MA [6]
  • Buchner J [6]
  • Hemsath JR [6]
  • Funes S [6]
  • Bakkes PJ [6]
  • Dabrowski M [6]
  • Reddy VS [6]
  • Andres FGM [6]
  • Scheerer P [5]
  • Vorlander MK [5]
  • Hagen WJH [5]
  • Koo CW [5]
  • Connell S [5]
  • Amos LA [5]
  • Rosenzweig AC [5]
  • Chapman MS [5]
  • Puno MR [5]
  • Sprink T [5]
  • He Y [5]
  • Weick EM [5]
  • Froehlich T [5]
  • Pridal A [5]
  • Farr GW [5]
  • Tucci FJ [5]
  • Hilal T [5]
  • Moravcova J [5]
  • Lima CD [5]
  • Wang J [5]
  • Pool MR [5]
  • Zinder JC [5]

Journal

  • NAT COMMUN [74]
  • J VIROL [57]
  • STRUCTURE [55]
  • NATURE [53]
  • PNAS [34]
  • NAT STRUCT MOL BIOL [31]
  • VIRUSES [31]
  • MOL CELL [21]
  • TO BE PUBLISHED [21]
  • CELL [20]
  • SCIENCE [18]
  • EMBO J [17]
  • ELIFE [14]
  • J MOL BIOL [12]
  • ACS CENT SCI [11]
  • J BIOL CHEM [8]
  • NAT METHODS [8]
  • J STRUCT BIOL [7]
  • NUCLEIC ACIDS RES [7]
  • BIORXIV [6]
  • SCI REP [6]
  • J AM CHEM SOC [5]
  • SCI ADV [4]
  • VIROLOGY [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • CELL REP [3]
  • COMMUN BIOL [3]
  • J STRUCT BIOL X [3]
  • MOL THER METHODS CLIN DEV [3]
  • ACS NANO [2]
  • EXP.MOL.MED. [2]
  • IUCRJ [2]
  • MICROSCOPY [2]
  • NAT CHEM BIOL [2]
  • PLOS BIOL [2]
  • ACTA CRYST. [1]
  • ADV SCI [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOCHIM BIOPHYS ACTA [1]
  • BIOMACROMOLECULES [1]
  • BLOOD [1]
  • CELL HOST MICROBE [1]
  • CELL RES [1]
  • EMBO REP [1]
  • J APPL CRYSTALLOGR [1]
  • LIFE SCI ALLIANCE [1]
  • MEDCOMM (2020) [1]
  • MICROORGANISMS [1]
  • MOL MICROBIOL [1]
  • MOL THER [1]
  • NAT CHEM [1]
  • PLOS PATHOG [1]
  • RNA [1]

Software

  • RELION [83]
  • SPIDER [64]
  • CRYOSPARC [60]
  • CISTEM [41]
  • MRC [22]
  • URO [22]
  • MOLREP [17]
  • AIMLESS [16]
  • POINTLESS [16]
  • AUTO3DEM [14]
  • PHENIX [14]
  • GCTF [12]
  • GAP [11]
  • FREALIGN [10]
  • IMAGIC [10]
  • CHIMERA [9]
  • UCSF CHIMERA [9]
  • EMAN [7]
  • SITUS [7]
  • EMFIT [6]
  • PHASER [6]
  • SHELXD [6]
  • CHIMERA, COOT, MDFF [5]
  • EMPFT, POR, P3DR [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
  • XSCALE [5]
  • CTFFIND [4]
  • MDFF [4]
  • SCALEPACK [4]
  • SPIDER AND GAP [4]
  • SPIDER, SIGNATURE, MAPPOS [4]
  • IMAGIC V [3]
  • PFT EM3DR [3]
  • PHOELIX [3]
  • SPIDER, SPARX [3]
  • COOT [2]
  • DIREX [2]
  • EMPFT, EM3DR [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • MOLECULAR DYNAMICS BASED FLEXIBLE FITTING MDFF [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • REFMAC [2]
  • SPIDER, IMAGIC [2]
  • SPIDER, XMIPP [2]
  • XDS [2]
  • 2DX [1]
  • BUSTER-TNT [1]
  • CCP4 [1]
  • CHIMERA AND COOT [1]
  • CHIMERA, COOT [1]
  • CNS [1]
  • CRYOLO [1]
  • ELITE3D, FREALIGN [1]
  • EM3DR [1]
  • EMBL ICOSAHEDRAL [1]
  • EMFIT SR5 [1]
  • EOS [1]
  • FLEX-EM [1]
  • FOLDHUNTER AND HOMEMADE SOFTWARE [1]
  • GROMACS [1]
  • HELICON [1]
  • IHRSR [1]
  • IMAGE2000 [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5, SPIDER [1]
  • IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
  • MOD-EM AND FLEX-EM [1]
  • MRC AND SPIDER [1]
  • MRC, CCP4, HOMEMADE [1]
  • O [1]
  • O, NAMD, EOS [1]
  • PARALLELIZED EMPFT, EM3DR [1]
  • PFT P3DR POR [1]
  • PURDUE SUITE [1]
  • SITUS AND EMFIT [1]
  • SITUS, COLORES [1]
  • SITUS, URO [1]
  • SPIDER AND IMAGIC [1]
  • SPIDER AND MRC [1]
  • SPIDER IMAGIC [1]
  • SPIDER-LIKE [1]
  • STAR, FISH, SPIDER [1]
  • STARFISH, SPIDER [1]
  • URO SITUS [1]

Microscope

  • FEI TITAN KRIOS [228]
  • FEI TECNAI F20 [82]
  • TFS KRIOS [60]
  • FEI TALOS ARCTICA [38]
  • FEI POLARA 300 [27]
  • FEI/PHILIPS CM200FEG [27]
  • FEI TECNAI F30 [17]
  • FEI/PHILIPS CM300FEG/T [13]
  • JEOL KYOTO-3000SFF [13]
  • FEI TECNAI 12 [12]
  • FEI TECNAI 20 [6]
  • FEI/PHILIPS CM200T [6]
  • JEOL 2010F [5]
  • JEOL 3000SFF [5]
  • JEOL 2100F [4]
  • JEOL CRYO ARM 300 [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG/UT [3]
  • TFS GLACIOS [3]
  • FEI TITAN [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI EF2000 [1]
  • JEOL 1200EXII [1]
  • JEOL 4000EX [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [529]
  • LAB6 [15]
  • OTHER [12]
  • TUNGSTEN HAIRPIN [9]

Film or detector model

  • KODAK SO-163 FILM [124]
  • GATAN K2 SUMMIT 4K X 4K [99]
  • TVIPS TEMCAM-F416 4K X 4K [67]
  • GATAN K3 6K X 4K [65]
  • FEI FALCON IV 4K X 4K [36]
  • FEI CETA 4K X 4K [29]
  • GATAN K3 BIOQUANTUM 6K X 4K [28]
  • FEI FALCON II 4K X 4K [20]
  • DIRECT ELECTRON DE-64 8K X 8K [12]
  • FEI FALCON III 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • GATAN ULTRASCAN 4000 4K X 4K [9]
  • GENERIC GATAN 4K X 4K [8]
  • FEI EAGLE 4K X 4K [7]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • GATAN K2 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI EAGLE 2K X 2K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • GENERIC CCD [1]
  • GENERIC CCD 2K X 2K [1]
  • GENERIC FILM [1]
  • GENERIC GATAN [1]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [557]
  • UniProt [354]
  • PDBe-Kb [333]
  • AlphaFold DB [275]
  • InterPro [262]
  • Gene Ontology [256]
  • ChEBI [187]
  • ChEMBL [169]
  • DrugBank [168]
  • Pfam [132]
  • Complex Portal [64]
  • SCOP2 [24]
  • EMPIAR [23]
  • CATH [20]