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Filter By

Current Database

  • EMDB [573]

Current status

  • REL [573]

Sample type

  • Protein [487]
  • Complex [289]
  • Ligand [210]
  • Sample [187]
  • Virus [166]
  • RNA [57]
  • Cellular component [43]
  • DNA [18]
  • Cell [3]

Organism

  • Homo sapiens [122]
  • Synthetic construct [51]
  • Adeno-associated virus [44]
  • Saccharomyces cerevisiae [43]
  • Escherichia coli [40]
  • Parengyodontium album [22]
  • Mus musculus [17]
  • Bos taurus [16]
  • Oryctolagus cuniculus [15]
  • Adeno-associated dependoparvovirus a [12]
  • Triticum aestivum [9]
  • Rattus norvegicus [8]
  • Hepacivirus c [7]
  • Sus scrofa [7]
  • Enterobacteria phage t4 [6]
  • Adeno-associated dependoparvovirus a [6]
  • Squamate dependoparvovirus 1 [6]
  • Saccharomyces cerevisiae [6]
  • Bufavirus-1 [5]
  • Adeno-associated dependoparvovirus a [5]
  • Enterovirus d [5]
  • Triticum sp. [5]
  • Primate bocaparvovirus 2 [5]
  • Canis lupus [5]
  • Human mastadenovirus c [4]
  • Bacillus thuringiensis [4]
  • (no species) [4]
  • Adeno-associated dependoparvovirus a [4]
  • Thermus thermophilus [4]
  • Drosophila melanogaster [4]
  • Unidentified adenovirus [3]
  • Bacillus phage phi29 [3]
  • Primate erythroparvovirus 1 [3]
  • Bacillus subtilis [3]
  • Methylococcus capsulatus [3]
  • Myxococcus xanthus [3]
  • Solenopsis invicta-associated densovirus [3]
  • Sulfolobus acidocaldarius [3]
  • Kelp fly virus [3]
  • Rodent protoparvovirus 1 [3]
  • Methanococcus maripaludis [3]
  • Dictyostelium discoideum [3]
  • Klebsiella pneumoniae [3]
  • Primate bocaparvovirus 1 [3]
  • Tick-borne encephalitis virus [3]
  • Torpedo marmorata [3]
  • Adeno-associated dependoparvovirus b [3]
  • Gallus gallus [3]
  • Hepatitis b virus [2]
  • Protoparvovirus rodent1 [2]
  • Maize streak virus [2]
  • (no species) [2]
  • Dengue virus [2]
  • Cypovirus 1 [2]
  • Avian coronavirus [2]
  • Escherichia coli [2]
  • Streptococcus pneumoniae [2]
  • Human blood metagenome [2]
  • Adeno-associated dependoparvovirus a [2]
  • Escherichia virus su10 [2]
  • Prevotella copri [2]
  • Methanocaldococcus jannaschii [2]
  • Adeno-associated dependoparvovirus a [2]
  • Adeno-associated dependoparvovirus a [2]
  • Penaeus monodon metallodensovirus [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Human mastadenovirus c [2]
  • Carnivore amdoparvovirus 1 [2]
  • Israeli acute paralysis virus [2]
  • Euglena gracilis [2]
  • Thermococcus kodakarensis [2]
  • Avian dependoparvovirus 1 [2]
  • Bluetongue virus [2]
  • Slow bee paralysis virus [2]
  • Adeno-associated dependoparvovirus a [2]
  • Trypanosoma brucei [2]
  • Shigella flexneri [2]
  • Chiropteran dependoparvovirus 1 [2]
  • Ovis aries [2]
  • Human herpesvirus 1 [1]
  • Human cytomegalovirus [1]
  • Bacillus phage sf6 [1]
  • Spiromicrovirus spv4 [1]
  • Methylotuvimicrobium alcaliphilum [1]
  • Rotavirus a [1]
  • Sindbis virus [1]
  • Mycobacterium xenopi [1]
  • Haloarcula hispanica icosahedral virus 2 [1]
  • Acidipropionibacterium acidipropionici [1]
  • Coxsackievirus [1]
  • Enterovirus c [1]
  • Bufavirus-2 [1]
  • Quasibacillus thermotolerans [1]
  • Tobacco mosaic virus [1]
  • Neisseria meningitidis [1]
  • Dengue virus [1]
  • Staphylococcus epidermidis [1]
  • Enterococcus faecalis [1]
  • Pyrobaculum aerophilum [1]
  • Bufavirus-3 [1]

EM Method

  • Single-particle [433]
  • Electron Crystallography [112]
  • Helical reconstruction [28]

Resolution

  • < 2Å [56]
  • ≥ 2Å and < 3Å [153]
  • ≥ 3Å and < 4Å [138]
  • ≥ 4Å and < 5Å [20]
  • ≥ 5Å and < 6Å [11]
  • ≥ 6Å and < 8Å [46]
  • ≥ 8Å and < 12Å [49]
  • ≥ 12Å and < 16Å [29]
  • ≥ 16Å and < 20Å [19]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [9]

Model molecular weight

  • 0-50 kDa [78]
  • 50-100 kDa [17]
  • 100-250 kDa [70]
  • 250-500 kDa [62]
  • 500-1000 kDa [29]
  • 1-2 MDa [36]
  • 2-5 MDa [110]
  • 5-10 MDa [22]
  • > 10 MDa [9]

Release Date

  • 2026 [23]
  • 2025 [48]
  • 2024 [39]
  • 2023 [27]
  • 2022 [53]
  • 2021 [47]
  • 2020 [27]
  • 2019 [32]
  • 2018 [60]
  • 2017 [13]
  • 2016 [18]
  • 2015 [20]
  • 2014 [14]
  • 2013 [10]
  • 2012 [12]
  • 2011 [15]
  • 2010 [26]
  • 2009 [20]
  • 2008 [8]
  • 2007 [19]
  • 2006 [20]
  • 2005 [13]
  • 2004 [9]

Author by name

  • Mckenna R [111]
  • Chipman P [101]
  • Mietzsch M [95]
  • Gonen T [82]
  • Hattne J [69]
  • Agbandje-mckenna M [56]
  • Martynowycz MW [54]
  • Rodriguez JA [52]
  • Beckmann R [47]
  • Shi D [41]
  • Berninghausen O [39]
  • Hsi J [37]
  • Mielke T [37]
  • Sawaya MR [33]
  • Bhattacharya N [30]
  • Cascio D [29]
  • Becker T [27]
  • Zee CT [27]
  • Alexander IE [25]
  • Farrar MA [25]
  • Gallagher-jones M [25]
  • Glynn C [25]
  • Huiskonen JT [25]
  • Khandekar N [25]
  • Logan GJ [25]
  • Sousa D [24]
  • Armache JP [23]
  • Eisenberg DS [23]
  • Gilbert RJ [22]
  • Nelson AR [22]
  • Zachary J [22]
  • Ghanem M [21]
  • Huang AM [21]
  • Potts L [21]
  • Smith NJ [21]
  • Gilbert RJC [20]
  • Saibil HR [20]
  • Stuart DI [20]
  • Wilson DN [20]
  • Soderlund-venermo M [19]
  • Chipman PR [18]
  • Hull JA [18]
  • Itoh Y [18]
  • Rossmann MG [18]
  • Bennett A [17]
  • Fujiyoshi Y [17]
  • Reyes FE [17]
  • Amunts A [16]
  • Bhushan S [15]
  • Fuzik T [15]
  • Plevka P [15]
  • Yu JC [15]
  • Anger AM [13]
  • Boyer DR [13]
  • Clare DK [13]
  • Jarasch A [13]
  • Khawaja A [13]
  • Rorbach J [13]
  • Tani K [13]
  • Zhang X [13]
  • Armache J-P [12]
  • Atanassov I [12]
  • Cipullo M [12]
  • Laptev I [12]
  • Luo M [12]
  • Penzes JJ [12]
  • Rodriguez J [12]
  • Sergiev P [12]
  • Tijssen P [12]
  • Bennett AD [11]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Huang R [11]
  • Jensen GJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Orlova EV [11]
  • Stoltz BM [11]
  • Wang J [11]
  • Zeher A [11]
  • Zhang Y [11]
  • Zhao W [11]
  • Fulton T [10]
  • Hendrickson WA [10]
  • Jimenez Ybargollin A [10]
  • Schulten K [10]
  • Seidler P [10]
  • Spahn CMT [10]
  • Abe K [9]
  • Andreas MP [9]
  • Beatrix B [9]
  • Giessen TW [9]
  • Gumbart J [9]
  • Schoehn G [9]
  • Thomm M [9]
  • Villa E [9]
  • De La Cruz Mj [9]
  • Bennett AB [8]
  • Calero G [8]
  • Chen S [8]

Author by ORCID

  • Mckenna R [69]
  • Chipman P [44]
  • Mietzsch M [34]
  • Hsi J [28]
  • Huiskonen JT [21]
  • Farrar MA [21]
  • Alexander IE [21]
  • Smith NJ [21]
  • Potts L [21]
  • Agbandje-mckenna M [17]
  • Penzes JJ [9]
  • Giessen TW [8]
  • Sawaya MR [8]
  • Fuzik T [7]
  • Soderlund-venermo M [7]
  • Plevka P [7]
  • Mudrick HE [6]
  • Bhandari J [6]
  • Lu SC [6]
  • Barry MA [6]
  • Hemsath JR [6]
  • Eisenberg DS [6]
  • Reddy VS [6]
  • Andres FGM [6]
  • Koo CW [5]
  • Rosenzweig AC [5]
  • Chapman MS [5]
  • Andreas MP [5]
  • He Y [5]
  • Yang T [5]
  • Tucci FJ [5]
  • Zhang Y [5]
  • Kittredge A [5]
  • Moravcova J [5]
  • Gonen T [5]
  • Wang J [5]
  • Hendrickson WA [5]
  • Bennett A [5]
  • Bennett AD [5]
  • Jimenez Ybargollin A [4]
  • Qiu J [4]
  • Dutzler R [4]
  • Dominguez R [4]
  • Bennett AB [4]
  • Zhou J [3]
  • Yang B [3]
  • Schoehn G [3]
  • Ge P [3]
  • Cascio D [3]
  • Boyer DR [3]
  • Martin J [3]
  • Lehmann EF [3]
  • Gobet A [3]
  • Zarkadas E [3]
  • Falson P [3]
  • Jiang YX [3]
  • Boczkowska M [3]
  • Jault JM [3]
  • Palmer NJ [3]
  • Chaptal V [3]
  • Orelle C [3]
  • Busuttil KB [3]
  • Taoka M [2]
  • Abrescia NGA [2]
  • Sjoberg BM [2]
  • Zarivach R [2]
  • Lau YH [2]
  • Doniger T [2]
  • White TA [2]
  • Rivalta A [2]
  • Itoh Y [2]
  • Jones JA [2]
  • Cascio D [2]
  • Frank GA [2]
  • Logan DT [2]
  • Rebowski G [2]
  • Lou JS [2]
  • Zane GM [2]
  • Prochazkova M [2]
  • Bamford DH [2]
  • Taguchi H [2]
  • Siborova M [2]
  • Huang P [2]
  • Ekstrom S [2]
  • Bashan A [2]
  • Lundin D [2]
  • Hattne J [2]
  • Sano FK [2]
  • Large EE [2]
  • Krotee P [2]
  • Warmack RA [2]
  • Michaeli S [2]
  • Nilsson AS [2]
  • Ubilla-rodriguez NC [2]
  • Hite RK [2]
  • Bimai O [2]
  • Chadani Y [2]
  • Rutz S [2]
  • Nureki O [2]
  • Huang XY [2]

Journal

  • NAT COMMUN [80]
  • J VIROL [57]
  • STRUCTURE [55]
  • NATURE [53]
  • PNAS [34]
  • NAT STRUCT MOL BIOL [31]
  • VIRUSES [31]
  • CELL [21]
  • MOL CELL [21]
  • TO BE PUBLISHED [21]
  • SCIENCE [18]
  • EMBO J [17]
  • ELIFE [14]
  • J MOL BIOL [12]
  • ACS CENT SCI [11]
  • J BIOL CHEM [8]
  • NAT METHODS [8]
  • J STRUCT BIOL [7]
  • NUCLEIC ACIDS RES [7]
  • BIORXIV [6]
  • SCI REP [6]
  • J AM CHEM SOC [5]
  • SCI ADV [4]
  • VIROLOGY [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • CELL REP [3]
  • COMMUN BIOL [3]
  • J STRUCT BIOL X [3]
  • MOL THER METHODS CLIN DEV [3]
  • ACS NANO [2]
  • EXP.MOL.MED. [2]
  • IUCRJ [2]
  • MICROSCOPY [2]
  • NAT CHEM BIOL [2]
  • PLOS BIOL [2]
  • ACTA CRYST. [1]
  • ADV SCI [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOCHIM BIOPHYS ACTA [1]
  • BIOMACROMOLECULES [1]
  • BLOOD [1]
  • CELL HOST MICROBE [1]
  • CELL RES [1]
  • EMBO REP [1]
  • J APPL CRYSTALLOGR [1]
  • JACS AU [1]
  • LIFE SCI ALLIANCE [1]
  • MEDCOMM (2020) [1]
  • MICROORGANISMS [1]
  • MOL MICROBIOL [1]
  • MOL THER [1]
  • NAT CHEM [1]
  • PLOS PATHOG [1]
  • RNA [1]

Software

  • RELION [83]
  • CRYOSPARC [67]
  • SPIDER [64]
  • CISTEM [41]
  • MRC [22]
  • URO [22]
  • GCTF [21]
  • MOLREP [17]
  • AIMLESS [16]
  • POINTLESS [16]
  • AUTO3DEM [14]
  • PHENIX [14]
  • GAP [11]
  • FREALIGN [10]
  • IMAGIC [10]
  • CHIMERA [9]
  • UCSF CHIMERA [9]
  • EMAN [7]
  • SITUS [7]
  • EMFIT [6]
  • PHASER [6]
  • SHELXD [6]
  • CHIMERA, COOT, MDFF [5]
  • EMPFT, POR, P3DR [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
  • XSCALE [5]
  • CTFFIND [4]
  • MDFF [4]
  • SCALEPACK [4]
  • SPIDER AND GAP [4]
  • SPIDER, SIGNATURE, MAPPOS [4]
  • IMAGIC V [3]
  • PFT EM3DR [3]
  • PHOELIX [3]
  • SPIDER, SPARX [3]
  • COOT [2]
  • DIREX [2]
  • EMPFT, EM3DR [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • MOLECULAR DYNAMICS BASED FLEXIBLE FITTING MDFF [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • REFMAC [2]
  • SPIDER, IMAGIC [2]
  • SPIDER, XMIPP [2]
  • XDS [2]
  • 2DX [1]
  • BUSTER-TNT [1]
  • CCP4 [1]
  • CHIMERA AND COOT [1]
  • CHIMERA, COOT [1]
  • CNS [1]
  • CRYOLO [1]
  • ELITE3D, FREALIGN [1]
  • EM3DR [1]
  • EMBL ICOSAHEDRAL [1]
  • EMFIT SR5 [1]
  • EOS [1]
  • FLEX-EM [1]
  • FOLDHUNTER AND HOMEMADE SOFTWARE [1]
  • GROMACS [1]
  • HELICON [1]
  • IHRSR [1]
  • IMAGE2000 [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5, SPIDER [1]
  • IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
  • MOD-EM AND FLEX-EM [1]
  • MRC AND SPIDER [1]
  • MRC, CCP4, HOMEMADE [1]
  • O [1]
  • O, NAMD, EOS [1]
  • PARALLELIZED EMPFT, EM3DR [1]
  • PFT P3DR POR [1]
  • PURDUE SUITE [1]
  • SITUS AND EMFIT [1]
  • SITUS, COLORES [1]
  • SITUS, URO [1]
  • SPIDER AND IMAGIC [1]
  • SPIDER AND MRC [1]
  • SPIDER IMAGIC [1]
  • SPIDER-LIKE [1]
  • STAR, FISH, SPIDER [1]
  • STARFISH, SPIDER [1]
  • URO SITUS [1]

Microscope

  • FEI TITAN KRIOS [228]
  • FEI TECNAI F20 [82]
  • TFS KRIOS [64]
  • FEI TALOS ARCTICA [38]
  • FEI POLARA 300 [27]
  • FEI/PHILIPS CM200FEG [27]
  • FEI TECNAI F30 [17]
  • FEI/PHILIPS CM300FEG/T [13]
  • JEOL KYOTO-3000SFF [13]
  • FEI TECNAI 12 [12]
  • TFS GLACIOS [7]
  • FEI TECNAI 20 [6]
  • FEI/PHILIPS CM200T [6]
  • JEOL 2010F [5]
  • JEOL 3000SFF [5]
  • JEOL 2100F [4]
  • JEOL CRYO ARM 300 [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG/UT [3]
  • FEI TITAN [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI EF2000 [1]
  • JEOL 1200EXII [1]
  • JEOL 4000EX [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [537]
  • LAB6 [15]
  • OTHER [12]
  • TUNGSTEN HAIRPIN [9]

Film or detector model

  • KODAK SO-163 FILM [124]
  • GATAN K2 SUMMIT 4K X 4K [99]
  • TVIPS TEMCAM-F416 4K X 4K [67]
  • GATAN K3 6K X 4K [65]
  • FEI FALCON IV 4K X 4K [37]
  • GATAN K3 BIOQUANTUM 6K X 4K [30]
  • FEI CETA 4K X 4K [29]
  • FEI FALCON II 4K X 4K [24]
  • DIRECT ELECTRON DE-64 8K X 8K [12]
  • FEI FALCON III 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • GATAN ULTRASCAN 4000 4K X 4K [9]
  • GENERIC GATAN 4K X 4K [8]
  • FEI EAGLE 4K X 4K [7]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • GATAN K2 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI EAGLE 2K X 2K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • TFS FALCON 4I 4K X 4K [2]
  • GENERIC CCD [1]
  • GENERIC CCD 2K X 2K [1]
  • GENERIC FILM [1]
  • GENERIC GATAN [1]

External links

  • PDB [437]
  • UniProt [367]
  • AlphaFold DB [290]
  • InterPro [267]
  • Gene Ontology [264]
  • PDBe-Kb [247]
  • ChEBI [196]
  • ChEMBL [176]
  • DrugBank [176]
  • Pfam [141]
  • Complex Portal [67]
  • EMPIAR [24]
  • SCOP2 [24]
  • CATH [20]
Sort by: Download
Showing 1 - 10 of 573. Page 1 of 58
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EMD-76770
Download Map
3D View
The AAV2 capsid in complex with IgG-Fab 3-2
CryoEM
Release date: Sept. 30, 2026
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 12us
Q-score: 0.58
Similar entry percentile: 96%

Logan GJ, Khandekar N, Hall B, Zachery J, Mandwie M, Hsi-Bell J, Huang A, Vyas K, Anderson D, Knight M, Farrar MA, Lisowski L, Reed JH, Mietzsch M, McKenna R, Alexander IE

Nat Commun (2026) [ ]

EMD-76771
Download Map
3D View
The AAV2 capsid in complex with IgA-Fab 3-2
CryoEM
Release date: Sept. 30, 2026
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 12ut
Q-score: 0.649
Similar entry percentile: 90%

Logan GJ, Khandekar N, Hall B, Zachery J, Mandwie M, Hsi-Bell J, Huang A, Vyas K, Anderson D, Knight M, Farrar MA, Lisowski L, Reed JH, Mietzsch M, McKenna R, Alexander IE

Nat Commun (2026) [ ]

EMD-76772
Download Map
3D View
The AAV2 capsid in complex with IgG-Fab 3-4
CryoEM
Release date: Sept. 30, 2026
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 12uu
Q-score: 0.594
Similar entry percentile: 91%

Logan GJ, Khandekar N, Hall B, Zachery J, Mandwie M, Hsi-Bell J, Huang A, Vyas K, Anderson D, Knight M, Farrar MA, Lisowski L, Reed JH, Mietzsch M, McKenna R, Alexander IE

Nat Commun (2026) [ ]

EMD-76773
Download Map
3D View
The AAV2 capsid in complex with IgA-Fab 3-4
CryoEM
Release date: Sept. 30, 2026
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 12uv
Q-score: 0.621
Similar entry percentile: 90%

Logan GJ, Khandekar N, Hall B, Zachery J, Mandwie M, Hsi-Bell J, Huang A, Vyas K, Anderson D, Knight M, Farrar MA, Lisowski L, Reed JH, Mietzsch M, McKenna R, Alexander IE

Nat Commun (2026) [ ]

EMD-55590
Download Map
3D View
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 1
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9t5n
Q-score: 0.313
Similar entry percentile: 4%

Lehmann EF, Stierli F, Rutz S, Deneka D, Dutzler R

Nat Commun (2026) 17 [ Pubmed: 42754598 DOI: doi:10.1038/s41467-026-77508-x ]

EMD-55591
Download Map
3D View
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 2
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9t5o
Q-score: 0.249
Similar entry percentile: 2%

Lehmann EF, Stierli F, Rutz S, Deneka D, Dutzler R

Nat Commun (2026) 17 [ Pubmed: 42754598 DOI: doi:10.1038/s41467-026-77508-x ]

EMD-70401
Download Map
3D View
amyloid fibril of recombinant transforming growth factor beta induced protein FAS1-4 domain with V624M mutation, refined using helical spacing of peripheral globular domain
CryoEM
Release date: Sept. 2, 2026
Resolution: 15.2 Å
EM Method: Single-particle

Jiang YX, Sawaya MR, Salwinski L, Ge P, Wang C, Hu CJ, Hernandez H, Boyer DR, Melo F, Eisenberg DS

To Be Published

EMD-72649
Download Map
3D View
Leucine Rich Repeat Kinase 2 bound to GMP-PNP inactive
CryoEM
Release date: Aug. 19, 2026
Resolution: 4.39 Å
EM Method: Single-particle
Fitted PDBs: 9y7a
Q-score: 0.331
Similar entry percentile: 58%

Villagran Suarez A, Hatch KS, Bodrug T, Gai W, Surridge KJ, Moussikhina E, Nguyen KHV, Sanz-Murillo M, Callahan R, Xiong E, Ramos D, Zhu L, Dederer V, Mathea S, Iwasa J, Knapp S, Shokat KM, Reck-Peterson SL, Leschziner AE

Cell (2026) [ Pubmed: 42575089 DOI: doi:10.1016/j.cell.2026.07.027 ]

EMD-65999
Download Map
3D View
Cryo-EM structure of GPR84-Gi complex with DL-175
Composite map
CryoEM
Release date: July 1, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9wik
Q-score: 0.485
Similar entry percentile: 62%

Suzuki S, Tran DP, Nishikawa K, Kitao A, Fujiyoshi Y

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-75728-9 Pubmed: 42463693 ]

EMD-74892
Download Map
3D View
Quasibacillus thermotolerans T 4 encapsulin pore mutant variant Glass 9
CryoEM
Release date: July 1, 2026
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9zvv
Q-score: 0.646
Similar entry percentile: 87%

Siddiquee R, Lie F, Szyszka TN, Loustau A, Andreas MP, Giessen TW, Lau YH

bioRxiv (2026) [ DOI: doi:10.64898/2026.01.12.698938 Pubmed: 41648261 ]

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Current Database

  • EMDB [573]

Current status

  • REL [573]

Sample type

  • Protein [487]
  • Complex [289]
  • Ligand [210]
  • Sample [187]
  • Virus [166]
  • RNA [57]
  • Cellular component [43]
  • DNA [18]
  • Cell [3]

Organism

  • Homo sapiens [122]
  • Synthetic construct [51]
  • Adeno-associated virus [44]
  • Saccharomyces cerevisiae [43]
  • Escherichia coli [40]
  • Parengyodontium album [22]
  • Mus musculus [17]
  • Bos taurus [16]
  • Oryctolagus cuniculus [15]
  • Adeno-associated dependoparvovirus a [12]
  • Triticum aestivum [9]
  • Rattus norvegicus [8]
  • Hepacivirus c [7]
  • Sus scrofa [7]
  • Enterobacteria phage t4 [6]
  • Adeno-associated dependoparvovirus a [6]
  • Squamate dependoparvovirus 1 [6]
  • Saccharomyces cerevisiae [6]
  • Bufavirus-1 [5]
  • Adeno-associated dependoparvovirus a [5]
  • Enterovirus d [5]
  • Triticum sp. [5]
  • Primate bocaparvovirus 2 [5]
  • Canis lupus [5]
  • Human mastadenovirus c [4]
  • Bacillus thuringiensis [4]
  • (no species) [4]
  • Adeno-associated dependoparvovirus a [4]
  • Thermus thermophilus [4]
  • Drosophila melanogaster [4]
  • Unidentified adenovirus [3]
  • Bacillus phage phi29 [3]
  • Primate erythroparvovirus 1 [3]
  • Bacillus subtilis [3]
  • Methylococcus capsulatus [3]
  • Myxococcus xanthus [3]
  • Solenopsis invicta-associated densovirus [3]
  • Sulfolobus acidocaldarius [3]
  • Kelp fly virus [3]
  • Rodent protoparvovirus 1 [3]
  • Methanococcus maripaludis [3]
  • Dictyostelium discoideum [3]
  • Klebsiella pneumoniae [3]
  • Primate bocaparvovirus 1 [3]
  • Tick-borne encephalitis virus [3]
  • Torpedo marmorata [3]
  • Adeno-associated dependoparvovirus b [3]
  • Gallus gallus [3]
  • Hepatitis b virus [2]
  • Protoparvovirus rodent1 [2]
  • Maize streak virus [2]
  • (no species) [2]
  • Dengue virus [2]
  • Cypovirus 1 [2]
  • Avian coronavirus [2]
  • Escherichia coli [2]
  • Streptococcus pneumoniae [2]
  • Human blood metagenome [2]
  • Adeno-associated dependoparvovirus a [2]
  • Escherichia virus su10 [2]
  • Prevotella copri [2]
  • Methanocaldococcus jannaschii [2]
  • Adeno-associated dependoparvovirus a [2]
  • Adeno-associated dependoparvovirus a [2]
  • Penaeus monodon metallodensovirus [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Human mastadenovirus c [2]
  • Carnivore amdoparvovirus 1 [2]
  • Israeli acute paralysis virus [2]
  • Euglena gracilis [2]
  • Thermococcus kodakarensis [2]
  • Avian dependoparvovirus 1 [2]
  • Bluetongue virus [2]
  • Slow bee paralysis virus [2]
  • Adeno-associated dependoparvovirus a [2]
  • Trypanosoma brucei [2]
  • Shigella flexneri [2]
  • Chiropteran dependoparvovirus 1 [2]
  • Ovis aries [2]
  • Human herpesvirus 1 [1]
  • Human cytomegalovirus [1]
  • Bacillus phage sf6 [1]
  • Spiromicrovirus spv4 [1]
  • Methylotuvimicrobium alcaliphilum [1]
  • Rotavirus a [1]
  • Sindbis virus [1]
  • Mycobacterium xenopi [1]
  • Haloarcula hispanica icosahedral virus 2 [1]
  • Acidipropionibacterium acidipropionici [1]
  • Coxsackievirus [1]
  • Enterovirus c [1]
  • Bufavirus-2 [1]
  • Quasibacillus thermotolerans [1]
  • Tobacco mosaic virus [1]
  • Neisseria meningitidis [1]
  • Dengue virus [1]
  • Staphylococcus epidermidis [1]
  • Enterococcus faecalis [1]
  • Pyrobaculum aerophilum [1]
  • Bufavirus-3 [1]

EM Method

  • Single-particle [433]
  • Electron Crystallography [112]
  • Helical reconstruction [28]

Resolution

  • < 2Å [56]
  • ≥ 2Å and < 3Å [153]
  • ≥ 3Å and < 4Å [138]
  • ≥ 4Å and < 5Å [20]
  • ≥ 5Å and < 6Å [11]
  • ≥ 6Å and < 8Å [46]
  • ≥ 8Å and < 12Å [49]
  • ≥ 12Å and < 16Å [29]
  • ≥ 16Å and < 20Å [19]
  • ≥ 20Å and < 30Å [19]
  • ≥ 30Å [9]

Model molecular weight

  • 0-50 kDa [78]
  • 50-100 kDa [17]
  • 100-250 kDa [70]
  • 250-500 kDa [62]
  • 500-1000 kDa [29]
  • 1-2 MDa [36]
  • 2-5 MDa [110]
  • 5-10 MDa [22]
  • > 10 MDa [9]

Release Date

  • 2026 [23]
  • 2025 [48]
  • 2024 [39]
  • 2023 [27]
  • 2022 [53]
  • 2021 [47]
  • 2020 [27]
  • 2019 [32]
  • 2018 [60]
  • 2017 [13]
  • 2016 [18]
  • 2015 [20]
  • 2014 [14]
  • 2013 [10]
  • 2012 [12]
  • 2011 [15]
  • 2010 [26]
  • 2009 [20]
  • 2008 [8]
  • 2007 [19]
  • 2006 [20]
  • 2005 [13]
  • 2004 [9]

Author by name

  • Mckenna R [111]
  • Chipman P [101]
  • Mietzsch M [95]
  • Gonen T [82]
  • Hattne J [69]
  • Agbandje-mckenna M [56]
  • Martynowycz MW [54]
  • Rodriguez JA [52]
  • Beckmann R [47]
  • Shi D [41]
  • Berninghausen O [39]
  • Hsi J [37]
  • Mielke T [37]
  • Sawaya MR [33]
  • Bhattacharya N [30]
  • Cascio D [29]
  • Becker T [27]
  • Zee CT [27]
  • Alexander IE [25]
  • Farrar MA [25]
  • Gallagher-jones M [25]
  • Glynn C [25]
  • Huiskonen JT [25]
  • Khandekar N [25]
  • Logan GJ [25]
  • Sousa D [24]
  • Armache JP [23]
  • Eisenberg DS [23]
  • Gilbert RJ [22]
  • Nelson AR [22]
  • Zachary J [22]
  • Ghanem M [21]
  • Huang AM [21]
  • Potts L [21]
  • Smith NJ [21]
  • Gilbert RJC [20]
  • Saibil HR [20]
  • Stuart DI [20]
  • Wilson DN [20]
  • Soderlund-venermo M [19]
  • Chipman PR [18]
  • Hull JA [18]
  • Itoh Y [18]
  • Rossmann MG [18]
  • Bennett A [17]
  • Fujiyoshi Y [17]
  • Reyes FE [17]
  • Amunts A [16]
  • Bhushan S [15]
  • Fuzik T [15]
  • Plevka P [15]
  • Yu JC [15]
  • Anger AM [13]
  • Boyer DR [13]
  • Clare DK [13]
  • Jarasch A [13]
  • Khawaja A [13]
  • Rorbach J [13]
  • Tani K [13]
  • Zhang X [13]
  • Armache J-P [12]
  • Atanassov I [12]
  • Cipullo M [12]
  • Laptev I [12]
  • Luo M [12]
  • Penzes JJ [12]
  • Rodriguez J [12]
  • Sergiev P [12]
  • Tijssen P [12]
  • Bennett AD [11]
  • Eisenberg D [11]
  • Fulton TJ [11]
  • Huang R [11]
  • Jensen GJ [11]
  • Jones CG [11]
  • Nelson HM [11]
  • Orlova EV [11]
  • Stoltz BM [11]
  • Wang J [11]
  • Zeher A [11]
  • Zhang Y [11]
  • Zhao W [11]
  • Fulton T [10]
  • Hendrickson WA [10]
  • Jimenez Ybargollin A [10]
  • Schulten K [10]
  • Seidler P [10]
  • Spahn CMT [10]
  • Abe K [9]
  • Andreas MP [9]
  • Beatrix B [9]
  • Giessen TW [9]
  • Gumbart J [9]
  • Schoehn G [9]
  • Thomm M [9]
  • Villa E [9]
  • De La Cruz Mj [9]
  • Bennett AB [8]
  • Calero G [8]
  • Chen S [8]

Author by ORCID

  • Mckenna R [69]
  • Chipman P [44]
  • Mietzsch M [34]
  • Hsi J [28]
  • Huiskonen JT [21]
  • Farrar MA [21]
  • Alexander IE [21]
  • Smith NJ [21]
  • Potts L [21]
  • Agbandje-mckenna M [17]
  • Penzes JJ [9]
  • Giessen TW [8]
  • Sawaya MR [8]
  • Fuzik T [7]
  • Soderlund-venermo M [7]
  • Plevka P [7]
  • Mudrick HE [6]
  • Bhandari J [6]
  • Lu SC [6]
  • Barry MA [6]
  • Hemsath JR [6]
  • Eisenberg DS [6]
  • Reddy VS [6]
  • Andres FGM [6]
  • Koo CW [5]
  • Rosenzweig AC [5]
  • Chapman MS [5]
  • Andreas MP [5]
  • He Y [5]
  • Yang T [5]
  • Tucci FJ [5]
  • Zhang Y [5]
  • Kittredge A [5]
  • Moravcova J [5]
  • Gonen T [5]
  • Wang J [5]
  • Hendrickson WA [5]
  • Bennett A [5]
  • Bennett AD [5]
  • Jimenez Ybargollin A [4]
  • Qiu J [4]
  • Dutzler R [4]
  • Dominguez R [4]
  • Bennett AB [4]
  • Zhou J [3]
  • Yang B [3]
  • Schoehn G [3]
  • Ge P [3]
  • Cascio D [3]
  • Boyer DR [3]
  • Martin J [3]
  • Lehmann EF [3]
  • Gobet A [3]
  • Zarkadas E [3]
  • Falson P [3]
  • Jiang YX [3]
  • Boczkowska M [3]
  • Jault JM [3]
  • Palmer NJ [3]
  • Chaptal V [3]
  • Orelle C [3]
  • Busuttil KB [3]
  • Taoka M [2]
  • Abrescia NGA [2]
  • Sjoberg BM [2]
  • Zarivach R [2]
  • Lau YH [2]
  • Doniger T [2]
  • White TA [2]
  • Rivalta A [2]
  • Itoh Y [2]
  • Jones JA [2]
  • Cascio D [2]
  • Frank GA [2]
  • Logan DT [2]
  • Rebowski G [2]
  • Lou JS [2]
  • Zane GM [2]
  • Prochazkova M [2]
  • Bamford DH [2]
  • Taguchi H [2]
  • Siborova M [2]
  • Huang P [2]
  • Ekstrom S [2]
  • Bashan A [2]
  • Lundin D [2]
  • Hattne J [2]
  • Sano FK [2]
  • Large EE [2]
  • Krotee P [2]
  • Warmack RA [2]
  • Michaeli S [2]
  • Nilsson AS [2]
  • Ubilla-rodriguez NC [2]
  • Hite RK [2]
  • Bimai O [2]
  • Chadani Y [2]
  • Rutz S [2]
  • Nureki O [2]
  • Huang XY [2]

Journal

  • NAT COMMUN [80]
  • J VIROL [57]
  • STRUCTURE [55]
  • NATURE [53]
  • PNAS [34]
  • NAT STRUCT MOL BIOL [31]
  • VIRUSES [31]
  • CELL [21]
  • MOL CELL [21]
  • TO BE PUBLISHED [21]
  • SCIENCE [18]
  • EMBO J [17]
  • ELIFE [14]
  • J MOL BIOL [12]
  • ACS CENT SCI [11]
  • J BIOL CHEM [8]
  • NAT METHODS [8]
  • J STRUCT BIOL [7]
  • NUCLEIC ACIDS RES [7]
  • BIORXIV [6]
  • SCI REP [6]
  • J AM CHEM SOC [5]
  • SCI ADV [4]
  • VIROLOGY [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [3]
  • CELL REP [3]
  • COMMUN BIOL [3]
  • J STRUCT BIOL X [3]
  • MOL THER METHODS CLIN DEV [3]
  • ACS NANO [2]
  • EXP.MOL.MED. [2]
  • IUCRJ [2]
  • MICROSCOPY [2]
  • NAT CHEM BIOL [2]
  • PLOS BIOL [2]
  • ACTA CRYST. [1]
  • ADV SCI [1]
  • ANGEW CHEM INT ED ENGL [1]
  • BIOCHIM BIOPHYS ACTA [1]
  • BIOMACROMOLECULES [1]
  • BLOOD [1]
  • CELL HOST MICROBE [1]
  • CELL RES [1]
  • EMBO REP [1]
  • J APPL CRYSTALLOGR [1]
  • JACS AU [1]
  • LIFE SCI ALLIANCE [1]
  • MEDCOMM (2020) [1]
  • MICROORGANISMS [1]
  • MOL MICROBIOL [1]
  • MOL THER [1]
  • NAT CHEM [1]
  • PLOS PATHOG [1]
  • RNA [1]

Software

  • RELION [83]
  • CRYOSPARC [67]
  • SPIDER [64]
  • CISTEM [41]
  • MRC [22]
  • URO [22]
  • GCTF [21]
  • MOLREP [17]
  • AIMLESS [16]
  • POINTLESS [16]
  • AUTO3DEM [14]
  • PHENIX [14]
  • GAP [11]
  • FREALIGN [10]
  • IMAGIC [10]
  • CHIMERA [9]
  • UCSF CHIMERA [9]
  • EMAN [7]
  • SITUS [7]
  • EMFIT [6]
  • PHASER [6]
  • SHELXD [6]
  • CHIMERA, COOT, MDFF [5]
  • EMPFT, POR, P3DR [5]
  • IMAGIC, EMAN, FREALIGN, SPIDER, GAP [5]
  • SPIDER, IMAGIC, GAP, CNS, XPLOR [5]
  • XSCALE [5]
  • CTFFIND [4]
  • MDFF [4]
  • SCALEPACK [4]
  • SPIDER AND GAP [4]
  • SPIDER, SIGNATURE, MAPPOS [4]
  • IMAGIC V [3]
  • PFT EM3DR [3]
  • PHOELIX [3]
  • SPIDER, SPARX [3]
  • COOT [2]
  • DIREX [2]
  • EMPFT, EM3DR [2]
  • FREALIGN, UPPSALA_PACKAGE [2]
  • IMAGIC, FREALIGN AND SPIDER [2]
  • MOLECULAR DYNAMICS BASED FLEXIBLE FITTING MDFF [2]
  • MRC, AND, OWN, PROGRAMS [2]
  • REFMAC [2]
  • SPIDER, IMAGIC [2]
  • SPIDER, XMIPP [2]
  • XDS [2]
  • 2DX [1]
  • BUSTER-TNT [1]
  • CCP4 [1]
  • CHIMERA AND COOT [1]
  • CHIMERA, COOT [1]
  • CNS [1]
  • CRYOLO [1]
  • ELITE3D, FREALIGN [1]
  • EM3DR [1]
  • EMBL ICOSAHEDRAL [1]
  • EMFIT SR5 [1]
  • EOS [1]
  • FLEX-EM [1]
  • FOLDHUNTER AND HOMEMADE SOFTWARE [1]
  • GROMACS [1]
  • HELICON [1]
  • IHRSR [1]
  • IMAGE2000 [1]
  • IMAGIC, FREALIGN, SPIDER, GAP [1]
  • IMAGIC-5, SPIDER [1]
  • IN-HOUSE SOFTWARE BASED ON MRC SYSTEM [1]
  • MOD-EM AND FLEX-EM [1]
  • MRC AND SPIDER [1]
  • MRC, CCP4, HOMEMADE [1]
  • O [1]
  • O, NAMD, EOS [1]
  • PARALLELIZED EMPFT, EM3DR [1]
  • PFT P3DR POR [1]
  • PURDUE SUITE [1]
  • SITUS AND EMFIT [1]
  • SITUS, COLORES [1]
  • SITUS, URO [1]
  • SPIDER AND IMAGIC [1]
  • SPIDER AND MRC [1]
  • SPIDER IMAGIC [1]
  • SPIDER-LIKE [1]
  • STAR, FISH, SPIDER [1]
  • STARFISH, SPIDER [1]
  • URO SITUS [1]

Microscope

  • FEI TITAN KRIOS [228]
  • FEI TECNAI F20 [82]
  • TFS KRIOS [64]
  • FEI TALOS ARCTICA [38]
  • FEI POLARA 300 [27]
  • FEI/PHILIPS CM200FEG [27]
  • FEI TECNAI F30 [17]
  • FEI/PHILIPS CM300FEG/T [13]
  • JEOL KYOTO-3000SFF [13]
  • FEI TECNAI 12 [12]
  • TFS GLACIOS [7]
  • FEI TECNAI 20 [6]
  • FEI/PHILIPS CM200T [6]
  • JEOL 2010F [5]
  • JEOL 3000SFF [5]
  • JEOL 2100F [4]
  • JEOL CRYO ARM 300 [4]
  • FEI TECNAI ARCTICA [3]
  • FEI/PHILIPS CM200FEG/UT [3]
  • FEI TITAN [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPIRIT [1]
  • FEI/PHILIPS CM300FEG/ST [1]
  • HITACHI EF2000 [1]
  • JEOL 1200EXII [1]
  • JEOL 4000EX [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [537]
  • LAB6 [15]
  • OTHER [12]
  • TUNGSTEN HAIRPIN [9]

Film or detector model

  • KODAK SO-163 FILM [124]
  • GATAN K2 SUMMIT 4K X 4K [99]
  • TVIPS TEMCAM-F416 4K X 4K [67]
  • GATAN K3 6K X 4K [65]
  • FEI FALCON IV 4K X 4K [37]
  • GATAN K3 BIOQUANTUM 6K X 4K [30]
  • FEI CETA 4K X 4K [29]
  • FEI FALCON II 4K X 4K [24]
  • DIRECT ELECTRON DE-64 8K X 8K [12]
  • FEI FALCON III 4K X 4K [12]
  • DIRECT ELECTRON DE-20 5K X 3K [10]
  • GATAN ULTRASCAN 4000 4K X 4K [9]
  • GENERIC GATAN 4K X 4K [8]
  • FEI EAGLE 4K X 4K [7]
  • GATAN K3 BIOCONTINUUM 6K X 4K [6]
  • GATAN K2 4K X 4K [5]
  • TVIPS TEMCAM-F415 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • FEI EAGLE 2K X 2K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [2]
  • TFS FALCON 4I 4K X 4K [2]
  • GENERIC CCD [1]
  • GENERIC CCD 2K X 2K [1]
  • GENERIC FILM [1]
  • GENERIC GATAN [1]

External links

  • PDB [437]
  • UniProt [367]
  • AlphaFold DB [290]
  • InterPro [267]
  • Gene Ontology [264]
  • PDBe-Kb [247]
  • ChEBI [196]
  • ChEMBL [176]
  • DrugBank [176]
  • Pfam [141]
  • Complex Portal [67]
  • EMPIAR [24]
  • SCOP2 [24]
  • CATH [20]