Filter By
Current Database
- EMDB [57491]
Current status
- REL [57491]
Sample type
- Complex [47312]
- Protein [39211]
- Ligand [22072]
- RNA [5265]
- Virus [3744]
- DNA [3674]
- Sample [3293]
- Cellular component [3196]
- Cell [1349]
- Tissue [304]
- Other [271]
- Em label [1]
Organism
- Homo sapiens [21115]
- Synthetic construct [4078]
- Mus musculus [3759]
- Escherichia coli [3243]
- Saccharomyces cerevisiae [2630]
- Severe acute respiratory syndrome coronavirus [2577]
- Rattus norvegicus [1278]
- Bos taurus [1214]
- Escherichia coli [1182]
- Human immunodeficiency virus 1 [1085]
- Oryctolagus cuniculus [1018]
- Sus scrofa [905]
- Xenopus laevis [870]
- Saccharomyces cerevisiae [833]
- Lama glama [654]
- Arabidopsis thaliana [585]
- Macaca mulatta [459]
- Drosophila melanogaster [363]
- Influenza a virus [330]
- Mycolicibacterium smegmatis [329]
- Chlamydomonas reinhardtii [329]
- Bacillus subtilis [265]
- Gallus gallus [249]
- Mycobacterium tuberculosis [238]
- Tetrahymena thermophila [208]
- Escherichia coli [202]
- Pseudomonas aeruginosa [192]
- Staphylococcus aureus [189]
- Vicugna pacos [185]
- Caenorhabditis elegans [181]
- Thermus thermophilus [167]
- Enterobacteria phage m13 [166]
- Chaetomium thermophilum [163]
- Danio rerio [161]
- Mycobacterium tuberculosis [149]
- Chaetomium thermophilum [139]
- Saccharomyces cerevisiae [137]
- Leishmania tarentolae [136]
- Enterobacteria phage t4 [135]
- Ovis aries [133]
- Geobacillus stearothermophilus [132]
- Bacillus subtilis [128]
- Escherichia virus t7 [125]
- (no species) [122]
- Plasmodium falciparum [121]
- Salmonella enterica [121]
- Aequorea victoria [116]
- Synechocystis sp. pcc 6803 [114]
- Bacillus sp. (strain ps3) [113]
- Plasmodium falciparum [113]
- Schizosaccharomyces pombe [112]
- Pseudomonas aeruginosa [109]
- Streptococcus pyogenes [106]
- Mycolicibacterium smegmatis [101]
- Severe acute respiratory syndrome coronavirus [100]
- Vibrio cholerae [96]
- Escherichia coli [94]
- Trypanosoma brucei [91]
- Mycoplasma pneumoniae [90]
- African swine fever virus [86]
- Spinacia oleracea [86]
- Hepatitis b virus [81]
- Clostridioides difficile [77]
- Cricetulus griseus [75]
- Human cytomegalovirus [72]
- Thermus thermophilus [72]
- Monkeypox virus [71]
- Eastern equine encephalitis virus [71]
- Dna molecule [71]
- Chikungunya virus [71]
- Human herpesvirus 1 [69]
- Thermoplasma acidophilum [69]
- Klebsiella pneumoniae [69]
- Macaca fascicularis [69]
- Schizosaccharomyces pombe [68]
- Salmonella enterica [68]
- Middle east respiratory syndrome-related coronavirus [67]
- Canis lupus [66]
- Adeno-associated virus [65]
- Enterovirus a [65]
- (no species) [64]
- Human immunodeficiency virus [64]
- Legionella pneumophila [64]
- Saccharomyces cerevisiae [63]
- Pseudomonas phage phi6 [62]
- Enterobacteria phage t4 [61]
- Polytomella sp. pringsheim 198.80 [59]
- Dengue virus [57]
- Lassa mammarenavirus [57]
- Zaire ebolavirus [56]
- Escherichia phage lambda [56]
- Trypanosoma brucei [56]
- Amanita phalloides [56]
- Sus scrofa [56]
- Clostridium botulinum [55]
- Epstein-barr virus (strain gd1) [54]
- Acinetobacter baumannii [54]
- Neurospora crassa [54]
- Equus caballus [54]
- Dictyostelium discoideum [53]
EM Method
- Single-particle [50028]
- Subtomogram averaging [2850]
- Helical reconstruction [2523]
- Tomography [1913]
- Electron Crystallography [177]
Resolution
- < 2Å [472]
- ≥ 2Å and < 3Å [12474]
- ≥ 3Å and < 4Å [24346]
- ≥ 4Å and < 5Å [5730]
- ≥ 5Å and < 6Å [1357]
- ≥ 6Å and < 8Å [2819]
- ≥ 8Å and < 12Å [2352]
- ≥ 12Å and < 16Å [1274]
- ≥ 16Å and < 20Å [1044]
- ≥ 20Å and < 30Å [2775]
- ≥ 30Å [1798]
Model molecular weight
- 0-50 kDa [756]
- 50-100 kDa [2315]
- 100-250 kDa [11086]
- 250-500 kDa [8901]
- 500-1000 kDa [5047]
- 1-2 MDa [2394]
- 2-5 MDa [2417]
- 5-10 MDa [606]
- > 10 MDa [478]
Release Date
- 2026 [6408]
- 2025 [11456]
- 2024 [9149]
- 2023 [7597]
- 2022 [5940]
- 2021 [4362]
- 2020 [3727]
- 2019 [2301]
- 2018 [1674]
- 2017 [1032]
- 2016 [988]
- 2015 [593]
- 2014 [545]
- 2013 [479]
- 2012 [357]
- 2011 [205]
- 2010 [190]
- 2009 [168]
- 2008 [46]
- 2007 [108]
- 2006 [99]
- 2005 [23]
- 2004 [24]
- 2003 [18]
- 2002 [2]
Author by name
- Liu J [1988]
- Zhang Y [1879]
- Wang Y [1771]
- Ward AB [1762]
- Zhang X [1685]
- Wang X [1503]
- Li Y [1356]
- Liu Y [1276]
- Wang J [1234]
- Ren G [1233]
- Zhang Z [1165]
- Zhang M [1156]
- Li X [1149]
- Li S [1094]
- Li Z [1079]
- Li J [984]
- Zhang J [977]
- Zhang L [972]
- Chen Y [926]
- Wang L [892]
- Gao Y [841]
- Wang H [832]
- Wang S [824]
- Li H [779]
- Zhang S [762]
- Liu S [757]
- Chen Z [726]
- Chen X [707]
- Liu C [702]
- Zhou ZH [675]
- Wang C [673]
- Liu Z [665]
- Liu X [663]
- Zhang H [657]
- Zhu Y [653]
- Shi Y [652]
- Liu H [644]
- Zhang K [638]
- Wang Q [626]
- Yang Y [625]
- Li D [622]
- Xu Y [615]
- Liu L [609]
- Wu H [595]
- Chen J [588]
- Wang Z [587]
- Jiang Y [585]
- Beckmann R [579]
- Yang X [541]
- Zhao Y [540]
- Han J [529]
- Huang Y [517]
- Cheng J [514]
- Cottrell CA [509]
- Zhou L [498]
- Burton DR [497]
- Zhang P [489]
- Li W [485]
- Ozorowski G [480]
- Wilson IA [478]
- Xu J [478]
- Xu C [474]
- Wu C [471]
- Chiu W [464]
- Zhang C [453]
- Yu X [450]
- Hu Z [441]
- Wu J [435]
- Chen L [434]
- Li L [434]
- Zhao J [433]
- Zhang Q [432]
- Zhang W [432]
- Wang W [427]
- Zhang R [427]
- Wang M [423]
- Sun Y [420]
- Wang P [420]
- Lu Y [419]
- Torres JL [415]
- Wang F [414]
- Cheng Y [411]
- Sanders RW [411]
- Zhao X [411]
- Zhou Y [411]
- Sewall LM [405]
- Zhou J [404]
- Zhu X [403]
- Li M [400]
- Zhou Q [400]
- Yang F [399]
- Berninghausen O [396]
- Kwong PD [393]
- Hu Y [392]
- Wu Y [392]
- Yu Z [390]
- Li T [389]
- Kotecha A [388]
- Zhang B [384]
- Yuan Q [383]
Author by ORCID
- Ren G [1169]
- Liu J [1041]
- Ward AB [883]
- Cottrell CA [503]
- Zhou ZH [458]
- Chiu W [407]
- Zhang M [396]
- Kotecha A [361]
- Brown A [360]
- Torres JL [344]
- Beckmann R [321]
- Kwong PD [316]
- Klinge S [313]
- Cheng Y [312]
- Skiniotis G [304]
- Rubinstein JL [286]
- Ozorowski G [280]
- Gao N [278]
- Lyumkis D [255]
- Scheres SHW [250]
- Crispin M [250]
- Xu HE [249]
- Hummer G [245]
- Raunser S [244]
- Kobilka BK [242]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Plevka P [223]
- Schulman BA [219]
- Nureki O [219]
- Baker D [218]
- Andersen ES [218]
- Li H [215]
- Amunts A [211]
- Zeng J [211]
- Thoms M [210]
- Gao GF [209]
- Geary C [209]
- Gao Y [205]
- Allen JD [205]
- Zheng Q [204]
- Kanekiyo M [201]
- Williamson JR [201]
- Papasergi-scott MM [201]
- Edwards RJ [200]
- Burton DR [199]
- Zhang K [197]
- Subramaniam S [197]
- Zhang P [195]
- Copps J [194]
- Schief WR [192]
- Gmeiner P [192]
- Fuzik T [190]
- Beck M [190]
- Cheng J [190]
- Lander GC [190]
- King NP [189]
- Carnathan DG [186]
- He F [185]
- Borgnia MJ [184]
- Han J [183]
- Bai XC [183]
- Kishikawa JI [182]
- Van Gils Mj [179]
- Huiskonen JT [177]
- Du J [177]
- Hurt E [176]
- Cramer P [175]
- Vanden Broeck A [175]
- Ranson NA [172]
- Zhang K [170]
- Mahamid J [169]
- Greber BJ [169]
- Stahlberg H [169]
- Lei D [169]
- Gui M [168]
- Hilger D [167]
- Liu J [167]
- Briggs JAG [167]
- Denk T [166]
- Henderson R [166]
- Kuhlbrandt W [165]
- Schmid MF [164]
- Itoh Y [163]
- Park YJ [163]
- Panova O [162]
- Engel BD [161]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Rappsilber J [159]
- Wang X [159]
- Sobolevsky AI [158]
- Xia X [158]
- Wilson DN [158]
- Zhang X [157]
- Sanders RW [157]
- Crowe Jr Je [156]
- Zhang R [155]
Journal
- NAT COMMUN [10713]
- TO BE PUBLISHED [6101]
- NATURE [4888]
- PNAS [3288]
- NAT STRUCT MOL BIOL [3079]
- SCIENCE [2739]
- BIORXIV [2734]
- CELL [2274]
- SCI ADV [1929]
- MOL CELL [1824]
- ELIFE [1619]
- STRUCTURE [1469]
- CELL REP [1293]
- NUCLEIC ACIDS RES [1156]
- EMBO J [756]
- CELL RES [690]
- COMMUN BIOL [681]
- J MOL BIOL [647]
- J VIROL [594]
- PLOS PATHOG [536]
- J BIOL CHEM [532]
- NAT CHEM BIOL [493]
- CELL DISCOV [464]
- NAT MICROBIOL [433]
- ACTA CRYSTALLOGR D STRUCT BIOL [406]
- SCI REP [326]
- NAT METHODS [316]
- J STRUCT BIOL [302]
- MBIO [273]
- IMMUNITY [232]
- NAT PLANTS [230]
- PLOS BIOL [209]
- EMBO REP [200]
- J AM CHEM SOC [197]
- CELL HOST MICROBE [196]
- PROTEIN SCI [194]
- PROTEIN CELL [176]
- J CELL BIOL [167]
- SCI TRANSL MED [147]
- NEURON [128]
- NPJ VACCINES [124]
- VIRUSES [123]
- IUCRJ [122]
- PLOS ONE [106]
- INT J MOL SCI [104]
- LIFE SCI ALLIANCE [102]
- ISCIENCE [101]
- J MED CHEM [85]
- PNAS NEXUS [85]
- ADV SCI [79]
- BIOCHEMISTRY [79]
- J STRUCT BIOL X [79]
- SIGNAL TRANSDUCT TARGET THER [79]
- RES SQ [75]
- COMMUN CHEM [74]
- SCI IMMUNOL [72]
- ACS NANO [70]
- CURR BIOL [67]
- DEV CELL [66]
- BIOCHEM BIOPHYS RES COMMUN [63]
- FEBS J [59]
- ANGEW CHEM INT ED ENGL [58]
- BLOOD [58]
- INT J BIOL MACROMOL [57]
- J CLIN INV [55]
- ACTA NEUROPATHOL [54]
- FRONT ENDOCRINOL [53]
- NAT NANOTECHNOL [49]
- RNA [49]
- BIOMOLECULES [48]
- NAT CATAL [48]
- FEBS LETT [43]
- FRONT MOL BIOSCI [43]
- MOL PLANT [41]
- GENES DEV [39]
- PLANT CELL [39]
- ACS CENT SCI [38]
- EBIOMEDICINE [38]
- VIROLOGY [38]
- CELL REP METHODS [37]
- NAT CHEM [37]
- MOL MICROBIOL [36]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- EMERG MICROBES INFECT [33]
- BIOCHEM J [32]
- ACS CHEM BIOL [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- J BACTERIOL [31]
- ACTA PHARMACOL.SIN. [30]
- FRONT IMMUNOL [30]
- NAT CELL BIOL [30]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- NAT IMMUNOL [29]
- NAT NEUROSCI [29]
- J EXP MED [27]
- NATL SCI REV [27]
- J GEN VIROL [26]
- BIOPHYS J [25]
Software
- CRYOSPARC [15711]
- RELION [14551]
- CTFFIND [2593]
- GCTF [1650]
- SPIDER [735]
- IMOD [680]
- WARP [598]
- TOMOCTF [530]
- CISTEM [473]
- CHIMERA [469]
- IPET [443]
- FREALIGN [432]
- COOT [383]
- EMAN2 [366]
- EMAN [348]
- DYNAMO [328]
- PHENIX [309]
- UCSF CHIMERAX [267]
- UCSF CHIMERA [176]
- XMIPP [156]
- CRYOLO [139]
- PYTOM [139]
- IMAGIC [132]
- PEET [132]
- SPHIRE [114]
- JSPR [109]
- MATLAB [90]
- AUTO3DEM [84]
- AV3 [83]
- NOVACTF [77]
- EMCLARITY [74]
- TOM TOOLBOX [65]
- CTFFIND3 [62]
- NOVASTA [62]
- CTFPHASEFLIP [61]
- SPARX [59]
- STOPGAP [54]
- SITUS [51]
- M [48]
- EMAN2, SPARX [47]
- TOM [47]
- AIMLESS [46]
- BSOFT [42]
- IMAGIC, SPIDER [42]
- MDFF [42]
- TOMO3D [42]
- ISOLDE [40]
- CRYODRGN [39]
- SPIDER, APPION [39]
- ETOMO [38]
- SPIDER, FREALIGN [37]
- MRC [36]
- SIMPLE [36]
- APPION, SPIDER [32]
- CTFFIND3, RELION [31]
- SCIPION [31]
- URO [31]
- APPION [30]
- SPRING [30]
- EMFIT [29]
- IHRSR [29]
- EMAN1 [27]
- CHIMERA, SITUS [26]
- MPSA [26]
- I3 [25]
- SUBTOM [25]
- CTFFIND4 [24]
- IMIRS [24]
- EMAN2, RELION [22]
- MOTIONCORR2 [22]
- CTFTILT [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- PROTOMO [20]
- CHIMERA, MDFF [19]
- J3DR [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- JALIGN [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- IMOD, TOMO3D [17]
- MOLREP [17]
- SPIDER, IMAGIC [17]
- MULTI-PATH SA [16]
- POINTLESS [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- CHIMERA, COOT [15]
- COMET [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- IMOD, DYNAMO [15]
- RELION, CTFFIND3 [15]
- SPIDER, EMAN [15]
- SPIDER, RELION [15]
- ARETOMO [14]
- CHIMERA, FLEX-EM [14]
- FREALIX [14]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- DIREX [13]
- EMREADY [13]
Microscope
- FEI TITAN KRIOS [30201]
- TFS KRIOS [13942]
- FEI TALOS ARCTICA [2860]
- TFS GLACIOS [1846]
- FEI TECNAI F20 [1487]
- FEI POLARA 300 [1172]
- FEI TECNAI SPIRIT [745]
- JEOL CRYO ARM 300 [696]
- FEI TITAN [625]
- FEI TECNAI F30 [624]
- ZEISS LIBRA120PLUS [476]
- FEI TECNAI ARCTICA [393]
- FEI TECNAI 20 [273]
- FEI TECNAI 12 [259]
- TFS TALOS [222]
- FEI/PHILIPS CM200FEG [193]
- JEOL 3200FSC [174]
- JEOL 2200FS [156]
- JEOL 2010F [104]
- FEI/PHILIPS CM300FEG/T [102]
- JEOL 2100F [94]
- JEOL CRYO ARM 200 [94]
- TFS TALOS L120C [75]
- TFS TALOS F200C [70]
- JEOL 2100 [61]
- FEI/PHILIPS EM420 [48]
- TFS TITAN THEMIS [48]
- JEOL 3200FS [44]
- JEOL 1230 [42]
- FEI MORGAGNI [36]
- FEI/PHILIPS CM120T [26]
- JEOL 3000SFF [24]
- JEOL KYOTO-3000SFF [24]
- OTHER [24]
- JEOL 4000EX [23]
- TFS TUNDRA [23]
- JEOL 1200EXII [18]
- JEOL 1400 [17]
- JEOL 4000 [17]
- JEOL 2200FSC [16]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [15]
- JEOL 1200EX [15]
- FEI/PHILIPS CM300FEG/HE [13]
- FEI/PHILIPS CM200T [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [10]
- JEOL 2010 [8]
- FEI TECNAI SPHERA [6]
- FEI/PHILIPS CM12 [6]
- FEI/PHILIPS CM300FEG/ST [6]
- JEOL 100CX [6]
- JEOL 2000EX [6]
- JEOL 3100FFC [6]
- FEI/PHILIPS CM10 [4]
- JEOL 1010 [4]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- HITACHI EF2000 [2]
- JEOL 2010HC [2]
- JEOL 2010HT [2]
- JEOL 3100FEF [2]
- SHUIMU TOTEM 300S [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H7600 [1]
- JEOL 1200 [1]
- JEOL 2000EXII [1]
- JEOL 2010UHR [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [55238]
- LAB6 [1747]
- OTHER [326]
- TUNGSTEN HAIRPIN [181]
Film or detector model
- GATAN K3 6K X 4K [14974]
- GATAN K3 BIOQUANTUM 6K X 4K [11601]
- GATAN K2 SUMMIT 4K X 4K [10597]
- FEI FALCON IV 4K X 4K [5758]
- FEI FALCON III 4K X 4K [3048]
- GATAN K2 QUANTUM 4K X 4K [2176]
- FEI FALCON II 4K X 4K [1469]
- TFS FALCON 4I 4K X 4K [1379]
- GATAN ULTRASCAN 4000 4K X 4K [1166]
- KODAK SO-163 FILM [828]
- TVIPS TEMCAM-F416 4K X 4K [819]
- GATAN K3 BIOCONTINUUM 6K X 4K [658]
- FEI EAGLE 4K X 4K [495]
- OTHER [364]
- FEI CETA 4K X 4K [346]
- GATAN K2 4K X 4K [219]
- GATAN K2 BASE 4K X 4K [213]
- TVIPS TEMCAM-F415 4K X 4K [147]
- DIRECT ELECTRON DE-20 5K X 3K [139]
- GENERIC GATAN 4K X 4K [105]
- FEI FALCON I 4K X 4K [99]
- GENERIC CCD [99]
- GATAN ULTRASCAN 1000 2K X 2K [67]
- GENERIC TVIPS 4K X 4K [61]
- FEI EAGLE 2K X 2K [59]
- TVIPS TEMCAM-F816 8K X 8K [50]
- DIRECT ELECTRON DE-64 8K X 8K [46]
- GATAN MULTISCAN [42]
- GATAN K2 IS 4K X 4K [41]
- GENERIC GATAN [41]
- DIRECT ELECTRON DE-16 4K X 4K [40]
- DIRECT ELECTRON APOLLO 4K X 4K [34]
- DIRECT ELECTRON DE-12 4K X 3K [29]
- DIRECT ELECTRON DE-10 5K X 4K [22]
- TVIPS TEMCAM-F224 2K X 2K [19]
- TVIPS TEMCAM-F216 2K X 2K [15]
- DECTRIS SINGLA 1K X 1K [12]
- KODAK 4489 FILM [12]
- GENERIC FILM [11]
- AGFA SCIENTA FILM [10]
- GENERIC CCD 2K X 2K [10]
- GENERIC TVIPS [10]
- GATAN ORIUS SC200 2K X 2K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [57010]
- UniProt [35129]
- PDBe-Kb [32579]
- AlphaFold DB [31597]
- InterPro [27372]
- Gene Ontology [26436]
- Pfam [24066]
- ChEBI [20448]
- ChEMBL [18390]
- DrugBank [16579]
- Complex Portal [9907]
- EMPIAR [5378]
- SCOP2 [644]
- CATH [411]
Resolution: 11.0 Å
EM Method: Single-particle
Chen B, Gao L, Bonninger M, Huang T, Krez N, Wen W, Bowen M, Lou J, Marks JD, Rummel A, Jin R
Nat Commun (2026) 17 [ Pubmed: 42337249 DOI: doi:10.1038/s41467-026-74499-7 ]
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9n3b
Q-score: 0.419
Khare B, Arnaud CA, Klose T, Rossmann MG, Crowe JE, Kuhn RJ
EMBO Rep (2026) [ DOI: doi:10.1038/s44319-026-00851-z ]
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9h52
Q-score: 0.216
Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J
Nat Commun (2026) 17 [ Pubmed: 42342677 DOI: doi:10.1038/s41467-026-74700-x ]
Resolution: 3.9 Å
EM Method: Single-particle
Schmidt SL, Dostal J, Sen S, Hovan A, Walter D, Appleby MV, Kojima A, Kato HE, Beale JH, Kloz M, Schertler GFX, Isaikina P
Science (2026) 392 pp. eadz3624-eadz3624 [ Pubmed: 42348698 DOI: doi:10.1126/science.adz3624 ]
Resolution: 6.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rbu
Q-score: 0.118
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
biorxiv.org (2025) [ DOI: doi:10.1101/2025.06.05.658037 ]
Resolution: 10.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9rc1
Q-score: 0.075
Vazquez-Sarandeses E, Mikirtumov V, Noel J, Kudryashev M, Daumke O
To Be Published
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9rmk
Q-score: 0.523
Harrison PJ, Naismith JH, Clare DK, Quigley A
To Be Published
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 9rnj
Q-score: 0.229
Matsuoka R, Oswald C, Jazayeri A, Duerr KL
To Be Published
Resolution: 2.4 Å
EM Method: Single-particle
Pellegrino S, Drulyte I, Harman M, Bezerra GA
To Be Published
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 9rqj
Q-score: 0.529
Thangaratnarajah C, Ettema TW, Slotboom DJ
To Be Published
Filter By
Current Database
- EMDB [57491]
Current status
- REL [57491]
Sample type
- Complex [47312]
- Protein [39211]
- Ligand [22072]
- RNA [5265]
- Virus [3744]
- DNA [3674]
- Sample [3293]
- Cellular component [3196]
- Cell [1349]
- Tissue [304]
- Other [271]
- Em label [1]
Organism
- Homo sapiens [21115]
- Synthetic construct [4078]
- Mus musculus [3759]
- Escherichia coli [3243]
- Saccharomyces cerevisiae [2630]
- Severe acute respiratory syndrome coronavirus [2577]
- Rattus norvegicus [1278]
- Bos taurus [1214]
- Escherichia coli [1182]
- Human immunodeficiency virus 1 [1085]
- Oryctolagus cuniculus [1018]
- Sus scrofa [905]
- Xenopus laevis [870]
- Saccharomyces cerevisiae [833]
- Lama glama [654]
- Arabidopsis thaliana [585]
- Macaca mulatta [459]
- Drosophila melanogaster [363]
- Influenza a virus [330]
- Mycolicibacterium smegmatis [329]
- Chlamydomonas reinhardtii [329]
- Bacillus subtilis [265]
- Gallus gallus [249]
- Mycobacterium tuberculosis [238]
- Tetrahymena thermophila [208]
- Escherichia coli [202]
- Pseudomonas aeruginosa [192]
- Staphylococcus aureus [189]
- Vicugna pacos [185]
- Caenorhabditis elegans [181]
- Thermus thermophilus [167]
- Enterobacteria phage m13 [166]
- Chaetomium thermophilum [163]
- Danio rerio [161]
- Mycobacterium tuberculosis [149]
- Chaetomium thermophilum [139]
- Saccharomyces cerevisiae [137]
- Leishmania tarentolae [136]
- Enterobacteria phage t4 [135]
- Ovis aries [133]
- Geobacillus stearothermophilus [132]
- Bacillus subtilis [128]
- Escherichia virus t7 [125]
- (no species) [122]
- Plasmodium falciparum [121]
- Salmonella enterica [121]
- Aequorea victoria [116]
- Synechocystis sp. pcc 6803 [114]
- Bacillus sp. (strain ps3) [113]
- Plasmodium falciparum [113]
- Schizosaccharomyces pombe [112]
- Pseudomonas aeruginosa [109]
- Streptococcus pyogenes [106]
- Mycolicibacterium smegmatis [101]
- Severe acute respiratory syndrome coronavirus [100]
- Vibrio cholerae [96]
- Escherichia coli [94]
- Trypanosoma brucei [91]
- Mycoplasma pneumoniae [90]
- African swine fever virus [86]
- Spinacia oleracea [86]
- Hepatitis b virus [81]
- Clostridioides difficile [77]
- Cricetulus griseus [75]
- Human cytomegalovirus [72]
- Thermus thermophilus [72]
- Monkeypox virus [71]
- Eastern equine encephalitis virus [71]
- Dna molecule [71]
- Chikungunya virus [71]
- Human herpesvirus 1 [69]
- Thermoplasma acidophilum [69]
- Klebsiella pneumoniae [69]
- Macaca fascicularis [69]
- Schizosaccharomyces pombe [68]
- Salmonella enterica [68]
- Middle east respiratory syndrome-related coronavirus [67]
- Canis lupus [66]
- Adeno-associated virus [65]
- Enterovirus a [65]
- (no species) [64]
- Human immunodeficiency virus [64]
- Legionella pneumophila [64]
- Saccharomyces cerevisiae [63]
- Pseudomonas phage phi6 [62]
- Enterobacteria phage t4 [61]
- Polytomella sp. pringsheim 198.80 [59]
- Dengue virus [57]
- Lassa mammarenavirus [57]
- Zaire ebolavirus [56]
- Escherichia phage lambda [56]
- Trypanosoma brucei [56]
- Amanita phalloides [56]
- Sus scrofa [56]
- Clostridium botulinum [55]
- Epstein-barr virus (strain gd1) [54]
- Acinetobacter baumannii [54]
- Neurospora crassa [54]
- Equus caballus [54]
- Dictyostelium discoideum [53]
EM Method
- Single-particle [50028]
- Subtomogram averaging [2850]
- Helical reconstruction [2523]
- Tomography [1913]
- Electron Crystallography [177]
Resolution
- < 2Å [472]
- ≥ 2Å and < 3Å [12474]
- ≥ 3Å and < 4Å [24346]
- ≥ 4Å and < 5Å [5730]
- ≥ 5Å and < 6Å [1357]
- ≥ 6Å and < 8Å [2819]
- ≥ 8Å and < 12Å [2352]
- ≥ 12Å and < 16Å [1274]
- ≥ 16Å and < 20Å [1044]
- ≥ 20Å and < 30Å [2775]
- ≥ 30Å [1798]
Model molecular weight
- 0-50 kDa [756]
- 50-100 kDa [2315]
- 100-250 kDa [11086]
- 250-500 kDa [8901]
- 500-1000 kDa [5047]
- 1-2 MDa [2394]
- 2-5 MDa [2417]
- 5-10 MDa [606]
- > 10 MDa [478]
Release Date
- 2026 [6408]
- 2025 [11456]
- 2024 [9149]
- 2023 [7597]
- 2022 [5940]
- 2021 [4362]
- 2020 [3727]
- 2019 [2301]
- 2018 [1674]
- 2017 [1032]
- 2016 [988]
- 2015 [593]
- 2014 [545]
- 2013 [479]
- 2012 [357]
- 2011 [205]
- 2010 [190]
- 2009 [168]
- 2008 [46]
- 2007 [108]
- 2006 [99]
- 2005 [23]
- 2004 [24]
- 2003 [18]
- 2002 [2]
Author by name
- Liu J [1988]
- Zhang Y [1879]
- Wang Y [1771]
- Ward AB [1762]
- Zhang X [1685]
- Wang X [1503]
- Li Y [1356]
- Liu Y [1276]
- Wang J [1234]
- Ren G [1233]
- Zhang Z [1165]
- Zhang M [1156]
- Li X [1149]
- Li S [1094]
- Li Z [1079]
- Li J [984]
- Zhang J [977]
- Zhang L [972]
- Chen Y [926]
- Wang L [892]
- Gao Y [841]
- Wang H [832]
- Wang S [824]
- Li H [779]
- Zhang S [762]
- Liu S [757]
- Chen Z [726]
- Chen X [707]
- Liu C [702]
- Zhou ZH [675]
- Wang C [673]
- Liu Z [665]
- Liu X [663]
- Zhang H [657]
- Zhu Y [653]
- Shi Y [652]
- Liu H [644]
- Zhang K [638]
- Wang Q [626]
- Yang Y [625]
- Li D [622]
- Xu Y [615]
- Liu L [609]
- Wu H [595]
- Chen J [588]
- Wang Z [587]
- Jiang Y [585]
- Beckmann R [579]
- Yang X [541]
- Zhao Y [540]
- Han J [529]
- Huang Y [517]
- Cheng J [514]
- Cottrell CA [509]
- Zhou L [498]
- Burton DR [497]
- Zhang P [489]
- Li W [485]
- Ozorowski G [480]
- Wilson IA [478]
- Xu J [478]
- Xu C [474]
- Wu C [471]
- Chiu W [464]
- Zhang C [453]
- Yu X [450]
- Hu Z [441]
- Wu J [435]
- Chen L [434]
- Li L [434]
- Zhao J [433]
- Zhang Q [432]
- Zhang W [432]
- Wang W [427]
- Zhang R [427]
- Wang M [423]
- Sun Y [420]
- Wang P [420]
- Lu Y [419]
- Torres JL [415]
- Wang F [414]
- Cheng Y [411]
- Sanders RW [411]
- Zhao X [411]
- Zhou Y [411]
- Sewall LM [405]
- Zhou J [404]
- Zhu X [403]
- Li M [400]
- Zhou Q [400]
- Yang F [399]
- Berninghausen O [396]
- Kwong PD [393]
- Hu Y [392]
- Wu Y [392]
- Yu Z [390]
- Li T [389]
- Kotecha A [388]
- Zhang B [384]
- Yuan Q [383]
Author by ORCID
- Ren G [1169]
- Liu J [1041]
- Ward AB [883]
- Cottrell CA [503]
- Zhou ZH [458]
- Chiu W [407]
- Zhang M [396]
- Kotecha A [361]
- Brown A [360]
- Torres JL [344]
- Beckmann R [321]
- Kwong PD [316]
- Klinge S [313]
- Cheng Y [312]
- Skiniotis G [304]
- Rubinstein JL [286]
- Ozorowski G [280]
- Gao N [278]
- Lyumkis D [255]
- Scheres SHW [250]
- Crispin M [250]
- Xu HE [249]
- Hummer G [245]
- Raunser S [244]
- Kobilka BK [242]
- Tao J [223]
- Bustamante C [223]
- Ashby PD [223]
- Plevka P [223]
- Schulman BA [219]
- Nureki O [219]
- Baker D [218]
- Andersen ES [218]
- Li H [215]
- Amunts A [211]
- Zeng J [211]
- Thoms M [210]
- Gao GF [209]
- Geary C [209]
- Gao Y [205]
- Allen JD [205]
- Zheng Q [204]
- Kanekiyo M [201]
- Williamson JR [201]
- Papasergi-scott MM [201]
- Edwards RJ [200]
- Burton DR [199]
- Zhang K [197]
- Subramaniam S [197]
- Zhang P [195]
- Copps J [194]
- Schief WR [192]
- Gmeiner P [192]
- Fuzik T [190]
- Beck M [190]
- Cheng J [190]
- Lander GC [190]
- King NP [189]
- Carnathan DG [186]
- He F [185]
- Borgnia MJ [184]
- Han J [183]
- Bai XC [183]
- Kishikawa JI [182]
- Van Gils Mj [179]
- Huiskonen JT [177]
- Du J [177]
- Hurt E [176]
- Cramer P [175]
- Vanden Broeck A [175]
- Ranson NA [172]
- Zhang K [170]
- Mahamid J [169]
- Greber BJ [169]
- Stahlberg H [169]
- Lei D [169]
- Gui M [168]
- Hilger D [167]
- Liu J [167]
- Briggs JAG [167]
- Denk T [166]
- Henderson R [166]
- Kuhlbrandt W [165]
- Schmid MF [164]
- Itoh Y [163]
- Park YJ [163]
- Panova O [162]
- Engel BD [161]
- Batebi H [160]
- Perez-hernandez G [160]
- Hildebrand PW [160]
- Rappsilber J [159]
- Wang X [159]
- Sobolevsky AI [158]
- Xia X [158]
- Wilson DN [158]
- Zhang X [157]
- Sanders RW [157]
- Crowe Jr Je [156]
- Zhang R [155]
Journal
- NAT COMMUN [10713]
- TO BE PUBLISHED [6101]
- NATURE [4888]
- PNAS [3288]
- NAT STRUCT MOL BIOL [3079]
- SCIENCE [2739]
- BIORXIV [2734]
- CELL [2274]
- SCI ADV [1929]
- MOL CELL [1824]
- ELIFE [1619]
- STRUCTURE [1469]
- CELL REP [1293]
- NUCLEIC ACIDS RES [1156]
- EMBO J [756]
- CELL RES [690]
- COMMUN BIOL [681]
- J MOL BIOL [647]
- J VIROL [594]
- PLOS PATHOG [536]
- J BIOL CHEM [532]
- NAT CHEM BIOL [493]
- CELL DISCOV [464]
- NAT MICROBIOL [433]
- ACTA CRYSTALLOGR D STRUCT BIOL [406]
- SCI REP [326]
- NAT METHODS [316]
- J STRUCT BIOL [302]
- MBIO [273]
- IMMUNITY [232]
- NAT PLANTS [230]
- PLOS BIOL [209]
- EMBO REP [200]
- J AM CHEM SOC [197]
- CELL HOST MICROBE [196]
- PROTEIN SCI [194]
- PROTEIN CELL [176]
- J CELL BIOL [167]
- SCI TRANSL MED [147]
- NEURON [128]
- NPJ VACCINES [124]
- VIRUSES [123]
- IUCRJ [122]
- PLOS ONE [106]
- INT J MOL SCI [104]
- LIFE SCI ALLIANCE [102]
- ISCIENCE [101]
- J MED CHEM [85]
- PNAS NEXUS [85]
- ADV SCI [79]
- BIOCHEMISTRY [79]
- J STRUCT BIOL X [79]
- SIGNAL TRANSDUCT TARGET THER [79]
- RES SQ [75]
- COMMUN CHEM [74]
- SCI IMMUNOL [72]
- ACS NANO [70]
- CURR BIOL [67]
- DEV CELL [66]
- BIOCHEM BIOPHYS RES COMMUN [63]
- FEBS J [59]
- ANGEW CHEM INT ED ENGL [58]
- BLOOD [58]
- INT J BIOL MACROMOL [57]
- J CLIN INV [55]
- ACTA NEUROPATHOL [54]
- FRONT ENDOCRINOL [53]
- NAT NANOTECHNOL [49]
- RNA [49]
- BIOMOLECULES [48]
- NAT CATAL [48]
- FEBS LETT [43]
- FRONT MOL BIOSCI [43]
- MOL PLANT [41]
- GENES DEV [39]
- PLANT CELL [39]
- ACS CENT SCI [38]
- EBIOMEDICINE [38]
- VIROLOGY [38]
- CELL REP METHODS [37]
- NAT CHEM [37]
- MOL MICROBIOL [36]
- PLANT COMMUN. [34]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [33]
- CELL REP MED [33]
- EMERG MICROBES INFECT [33]
- BIOCHEM J [32]
- ACS CHEM BIOL [31]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- J BACTERIOL [31]
- ACTA PHARMACOL.SIN. [30]
- FRONT IMMUNOL [30]
- NAT CELL BIOL [30]
- BIOCHIM BIOPHYS ACTA BIOENERG [29]
- NAT IMMUNOL [29]
- NAT NEUROSCI [29]
- J EXP MED [27]
- NATL SCI REV [27]
- J GEN VIROL [26]
- BIOPHYS J [25]
Software
- CRYOSPARC [15711]
- RELION [14551]
- CTFFIND [2593]
- GCTF [1650]
- SPIDER [735]
- IMOD [680]
- WARP [598]
- TOMOCTF [530]
- CISTEM [473]
- CHIMERA [469]
- IPET [443]
- FREALIGN [432]
- COOT [383]
- EMAN2 [366]
- EMAN [348]
- DYNAMO [328]
- PHENIX [309]
- UCSF CHIMERAX [267]
- UCSF CHIMERA [176]
- XMIPP [156]
- CRYOLO [139]
- PYTOM [139]
- IMAGIC [132]
- PEET [132]
- SPHIRE [114]
- JSPR [109]
- MATLAB [90]
- AUTO3DEM [84]
- AV3 [83]
- NOVACTF [77]
- EMCLARITY [74]
- TOM TOOLBOX [65]
- CTFFIND3 [62]
- NOVASTA [62]
- CTFPHASEFLIP [61]
- SPARX [59]
- STOPGAP [54]
- SITUS [51]
- M [48]
- EMAN2, SPARX [47]
- TOM [47]
- AIMLESS [46]
- BSOFT [42]
- IMAGIC, SPIDER [42]
- MDFF [42]
- TOMO3D [42]
- ISOLDE [40]
- CRYODRGN [39]
- SPIDER, APPION [39]
- ETOMO [38]
- SPIDER, FREALIGN [37]
- MRC [36]
- SIMPLE [36]
- APPION, SPIDER [32]
- CTFFIND3, RELION [31]
- SCIPION [31]
- URO [31]
- APPION [30]
- SPRING [30]
- EMFIT [29]
- IHRSR [29]
- EMAN1 [27]
- CHIMERA, SITUS [26]
- MPSA [26]
- I3 [25]
- SUBTOM [25]
- CTFFIND4 [24]
- IMIRS [24]
- EMAN2, RELION [22]
- MOTIONCORR2 [22]
- CTFTILT [20]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- PROTOMO [20]
- CHIMERA, MDFF [19]
- J3DR [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- JALIGN [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- IMOD, TOMO3D [17]
- MOLREP [17]
- SPIDER, IMAGIC [17]
- MULTI-PATH SA [16]
- POINTLESS [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- CHIMERA, COOT [15]
- COMET [15]
- EMAN, SPIDER [15]
- IMAGIC-5 [15]
- IMOD, DYNAMO [15]
- RELION, CTFFIND3 [15]
- SPIDER, EMAN [15]
- SPIDER, RELION [15]
- ARETOMO [14]
- CHIMERA, FLEX-EM [14]
- FREALIX [14]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- DIREX [13]
- EMREADY [13]
Microscope
- FEI TITAN KRIOS [30201]
- TFS KRIOS [13942]
- FEI TALOS ARCTICA [2860]
- TFS GLACIOS [1846]
- FEI TECNAI F20 [1487]
- FEI POLARA 300 [1172]
- FEI TECNAI SPIRIT [745]
- JEOL CRYO ARM 300 [696]
- FEI TITAN [625]
- FEI TECNAI F30 [624]
- ZEISS LIBRA120PLUS [476]
- FEI TECNAI ARCTICA [393]
- FEI TECNAI 20 [273]
- FEI TECNAI 12 [259]
- TFS TALOS [222]
- FEI/PHILIPS CM200FEG [193]
- JEOL 3200FSC [174]
- JEOL 2200FS [156]
- JEOL 2010F [104]
- FEI/PHILIPS CM300FEG/T [102]
- JEOL 2100F [94]
- JEOL CRYO ARM 200 [94]
- TFS TALOS L120C [75]
- TFS TALOS F200C [70]
- JEOL 2100 [61]
- FEI/PHILIPS EM420 [48]
- TFS TITAN THEMIS [48]
- JEOL 3200FS [44]
- JEOL 1230 [42]
- FEI MORGAGNI [36]
- FEI/PHILIPS CM120T [26]
- JEOL 3000SFF [24]
- JEOL KYOTO-3000SFF [24]
- OTHER [24]
- JEOL 4000EX [23]
- TFS TUNDRA [23]
- JEOL 1200EXII [18]
- JEOL 1400 [17]
- JEOL 4000 [17]
- JEOL 2200FSC [16]
- FEI TECNAI 10 [15]
- FEI/PHILIPS CM200FEG/ST [15]
- JEOL 1200EX [15]
- FEI/PHILIPS CM300FEG/HE [13]
- FEI/PHILIPS CM200T [12]
- JEOL 1400/HR YPS FEG [11]
- FEI/PHILIPS CM200FEG/UT [10]
- JEOL 2010 [8]
- FEI TECNAI SPHERA [6]
- FEI/PHILIPS CM12 [6]
- FEI/PHILIPS CM300FEG/ST [6]
- JEOL 100CX [6]
- JEOL 2000EX [6]
- JEOL 3100FFC [6]
- FEI/PHILIPS CM10 [4]
- JEOL 1010 [4]
- HITACHI H-9500SD [3]
- JEOL 1000EES [3]
- HITACHI EF2000 [2]
- JEOL 2010HC [2]
- JEOL 2010HT [2]
- JEOL 3100FEF [2]
- SHUIMU TOTEM 300S [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI H7600 [1]
- JEOL 1200 [1]
- JEOL 2000EXII [1]
- JEOL 2010UHR [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [55238]
- LAB6 [1747]
- OTHER [326]
- TUNGSTEN HAIRPIN [181]
Film or detector model
- GATAN K3 6K X 4K [14974]
- GATAN K3 BIOQUANTUM 6K X 4K [11601]
- GATAN K2 SUMMIT 4K X 4K [10597]
- FEI FALCON IV 4K X 4K [5758]
- FEI FALCON III 4K X 4K [3048]
- GATAN K2 QUANTUM 4K X 4K [2176]
- FEI FALCON II 4K X 4K [1469]
- TFS FALCON 4I 4K X 4K [1379]
- GATAN ULTRASCAN 4000 4K X 4K [1166]
- KODAK SO-163 FILM [828]
- TVIPS TEMCAM-F416 4K X 4K [819]
- GATAN K3 BIOCONTINUUM 6K X 4K [658]
- FEI EAGLE 4K X 4K [495]
- OTHER [364]
- FEI CETA 4K X 4K [346]
- GATAN K2 4K X 4K [219]
- GATAN K2 BASE 4K X 4K [213]
- TVIPS TEMCAM-F415 4K X 4K [147]
- DIRECT ELECTRON DE-20 5K X 3K [139]
- GENERIC GATAN 4K X 4K [105]
- FEI FALCON I 4K X 4K [99]
- GENERIC CCD [99]
- GATAN ULTRASCAN 1000 2K X 2K [67]
- GENERIC TVIPS 4K X 4K [61]
- FEI EAGLE 2K X 2K [59]
- TVIPS TEMCAM-F816 8K X 8K [50]
- DIRECT ELECTRON DE-64 8K X 8K [46]
- GATAN MULTISCAN [42]
- GATAN K2 IS 4K X 4K [41]
- GENERIC GATAN [41]
- DIRECT ELECTRON DE-16 4K X 4K [40]
- DIRECT ELECTRON APOLLO 4K X 4K [34]
- DIRECT ELECTRON DE-12 4K X 3K [29]
- DIRECT ELECTRON DE-10 5K X 4K [22]
- TVIPS TEMCAM-F224 2K X 2K [19]
- TVIPS TEMCAM-F216 2K X 2K [15]
- DECTRIS SINGLA 1K X 1K [12]
- KODAK 4489 FILM [12]
- GENERIC FILM [11]
- AGFA SCIENTA FILM [10]
- GENERIC CCD 2K X 2K [10]
- GENERIC TVIPS [10]
- GATAN ORIUS SC200 2K X 2K [7]
- GENERIC GATAN 2K X 2K [7]
- DECTRIS ELA 1K X 0.5K [6]
- GATAN ULTRASCAN 10000 10K X 10K [6]
- GATAN ALPINE 2.3K X 3.2K [5]
- SIA 15C 3K X 3K [4]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- GATAN ORIUS SC600 2.7K X 2.7K [2]
- DECTRIS ARINA 0.2K X 0.2K [1]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- PDB [57010]
- UniProt [35129]
- PDBe-Kb [32579]
- AlphaFold DB [31597]
- InterPro [27372]
- Gene Ontology [26436]
- Pfam [24066]
- ChEBI [20448]
- ChEMBL [18390]
- DrugBank [16579]
- Complex Portal [9907]
- EMPIAR [5378]
- SCOP2 [644]
- CATH [411]
