Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [21]
  • Protein [15]
  • Ligand [5]
  • RNA [2]
  • Virus [2]
  • Cell [1]
  • DNA [1]

Organism

  • Homo sapiens [11]
  • Komagataella phaffii [4]
  • Escherichia coli [3]
  • Mus musculus [2]
  • Plasmodium falciparum [2]
  • Saccharolobus solfataricus [1]
  • Adeno-associated virus [1]
  • Synthetic construct [1]
  • Escherichia coli [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Escherichia coli [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [6]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2025 [4]
  • 2021 [1]
  • 2019 [1]
  • 2018 [7]
  • 2017 [8]
  • 2016 [3]

Author by name

  • Bailey LJ [8]
  • Carragher B [8]
  • Deprez B [8]
  • Deprez-poulain R [8]
  • Farcasanu M [8]
  • Koide A [8]
  • Koide S [8]
  • Kossiakoff AA [8]
  • Lee D [8]
  • Li S [8]
  • Liang WG [8]
  • Liu DR [8]
  • Mccord LA [8]
  • Potter CS [8]
  • Potter SC [8]
  • Shang W [8]
  • Tan YZ [8]
  • Tang WJ [8]
  • Wang A [8]
  • Wei H [8]
  • Woods VA [8]
  • Zhang Z [8]
  • Grba DN [4]
  • Hirst J [4]
  • Ivanov BS [4]
  • Lee CS [4]
  • Wright JJ [4]
  • Beckmann R [3]
  • Emerling D [2]
  • Flores-garcia Y [2]
  • Glanville J [2]
  • King CR [2]
  • Ockenhouse CF [2]
  • Oyen D [2]
  • Torres JL [2]
  • Volkmuth W [2]
  • Ward AB [2]
  • Wickles S [2]
  • Wille-reece U [2]
  • Wilson IA [2]
  • Zavala F [2]
  • Agbandje-mckenna M [1]
  • Agbandje-mckenna M [1]
  • Beck M [1]
  • Becker T [1]
  • Bennett AB [1]
  • Bennett AD [1]
  • Berninghausen O [1]
  • Bhattacharya N [1]
  • Biswas C [1]
  • Brun MJ [1]
  • Bulkley D [1]
  • Buschauer R [1]
  • Cai H [1]
  • Chen T [1]
  • Chen W [1]
  • Cheng Y [1]
  • Clarke J [1]
  • Cong Y [1]
  • Craik CS [1]
  • Cramer P [1]
  • Crevenna AH [1]
  • Dang S [1]
  • Dey S [1]
  • Evans AC [1]
  • Fan J [1]
  • Farnung L [1]
  • Feng S [1]
  • Fibriansah G [1]
  • Gerovac M [1]
  • Guenther CM [1]
  • Heuer A [1]
  • Hirai H [1]
  • Ho ML [1]
  • Hollins JJ [1]
  • Iwasaki K [1]
  • Kedrov A [1]
  • Kiosze-becker K [1]
  • Kostyuchenko VA [1]
  • Kwon S [1]
  • Lam M [1]
  • Lamb DC [1]
  • Li D [1]
  • Lim EX [1]
  • Liu X [1]
  • Lok SM [1]
  • Lolicato M [1]
  • Luo Y [1]
  • Ma L [1]
  • Maeda S [1]
  • Matoba K [1]
  • Mihara E [1]
  • Minor DL [1]
  • Miyazaki N [1]
  • Ng TS [1]
  • Nickson AA [1]
  • Nilsson OB [1]
  • Nung Jan Y [1]
  • Nurenberg-goloub E [1]
  • Ooi JS [1]

Author by ORCID

  • Tan YZ [8]
  • Lee D [8]
  • Carragher B [8]
  • Deprez-poulain R [8]
  • Tang WJ [8]
  • Potter CS [8]
  • Hirst J [4]
  • Wright JJ [4]
  • Ivanov BS [4]
  • Grba DN [4]
  • Lee CS [4]
  • Torres JL [2]
  • Thompson S [1]
  • Cai H [1]
  • Chen W [1]
  • Kedrov A [1]
  • Dang S [1]
  • Cheng Y [1]
  • Lamb DC [1]
  • Tampe R [1]
  • Lolicato M [1]
  • Bulkley D [1]
  • Wan G [1]
  • Von Heijne G [1]
  • Ye W [1]
  • Miyazaki N [1]
  • Qi L [1]
  • Crevenna AH [1]
  • Gerovac M [1]
  • Beck M [1]
  • Farnung L [1]
  • Peters CJ [1]
  • Fibriansah G [1]
  • Wu H [1]
  • Sengupta J [1]
  • Tien J [1]
  • Lok SM [1]
  • Li D [1]
  • Ooi JS [1]

Journal

  • ELIFE [8]
  • SCI ADV [4]
  • CELL REP [2]
  • NATURE [2]
  • PNAS [2]
  • J BIOL CHEM [1]
  • J CELL BIOL [1]
  • MOL THER [1]
  • NAT COMMUN [1]
  • NAT STRUCT MOL BIOL [1]
  • STRUCTURE [1]

Software

  • RELION [16]
  • CRYOSPARC [5]
  • SPIDER [4]
  • CTFFIND [3]
  • EMAN [3]
  • EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [14]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI SPIRIT [3]
  • FEI POLARA 300 [1]
  • FEI TITAN [1]
  • HITACHI H-9500SD [1]

Electron Source

  • FIELD EMISSION GUN [20]
  • LAB6 [3]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON III 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI EAGLE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [17]
  • InterPro [15]
  • PDBe-Kb [15]
  • Pfam [15]
  • UniProt [15]
  • Gene Ontology [14]
  • AlphaFold DB [13]
  • ChEBI [5]
  • Complex Portal [5]
  • CATH [4]
  • ChEMBL [4]
  • DrugBank [4]
  • SCOP2 [2]
  • EMPIAR [1]
Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
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EMD-52890
Download Map
3D View
NUQM-free state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Release date: Oct. 29, 2025
Resolution: 8.2 Å
EM Method: Single-particle

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J

Sci Adv (2025) 11 pp. eadz0693-eadz0693 [ DOI: doi:10.1126/sciadv.adz0693 Pubmed: 41032597 ]

EMD-52891
Download Map
3D View
NUQM-bound state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Release date: Oct. 29, 2025
Resolution: 4.7 Å
EM Method: Single-particle

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J

Sci Adv (2025) 11 pp. eadz0693-eadz0693 [ DOI: doi:10.1126/sciadv.adz0693 Pubmed: 41032597 ]

EMD-52892
Download Map
3D View
Flavoprotein NUHM and NUBM -free state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Release date: Oct. 29, 2025
Resolution: 20.0 Å
EM Method: Single-particle

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J

Sci Adv (2025) 11 pp. eadz0693-eadz0693 [ DOI: doi:10.1126/sciadv.adz0693 Pubmed: 41032597 ]

EMD-52893
Download Map
3D View
Flavoprotein NUHM and NUBM -containing state of Pichia pastoris mitochondrial complex I reconstituted into proteoliposomes
Release date: Oct. 29, 2025
Resolution: 4.7 Å
EM Method: Single-particle

Lee CS, Grba DN, Wright JJ, Ivanov BS, Hirst J

Sci Adv (2025) 11 pp. eadz0693-eadz0693 [ DOI: doi:10.1126/sciadv.adz0693 Pubmed: 41032597 ]

EMD-31754
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3D View
Cryo-EM structure of Patched1 V1084A mutant in lipid nanodisc, 3.64 angstrom reprocessed with the dataset of 7dzp
Release date: Sept. 22, 2021
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7v6z
Q-score: 0.392

Luo Y, Wan G, Zhang X, Zhou X, Wang Q, Fan J, Cai H, Ma L, Wu H, Qu Q, Cong Y, Zhao Y, Li D

Structure (2021) 29 pp. 1286- [ Pubmed: 34174188 DOI: doi:10.1016/j.str.2021.06.004 ]

EMD-0535
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Cryo-EM Reconstruction of Protease-Activateable Adeno-Associated Virus 9 AAV9-L001
Release date: March 13, 2019
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 6nxe
Q-score: 0.306

Guenther CM, Brun MJ, Bennett AD, Ho ML, Chen W, Zhu B, Lam M, Yamagami M, Kwon S, Bhattacharya N, Sousa D, Evans AC, Voss J, Sevick-Muraca EM, Agbandje-McKenna M, Suh J

Mol Ther (2019) 27 pp. 611-622 [ DOI: doi:10.1016/j.ymthe.2019.01.015 Pubmed: 30772143 ]

EMD-6979
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E. coli 50S subunit bound HflX protein in presence of ATP AMP-PNP and GTP GMP-PNP analogs.
Release date: June 27, 2018
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 5zzm
Q-score: 0.091

Dey S, Biswas C, Sengupta J

J Cell Biol (2018) 217 pp. 2519-2529 [ Pubmed: 29930203 DOI: doi:10.1083/jcb.201711131 ]

EMD-7092
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Cryo-EM structure of human insulin degrading enzyme in complex with insulin
Release date: April 4, 2018
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6bf8
Q-score: 0.153

Zhang Z, Liang WG, Bailey LJ, Tan YZ, Wei H, Wang A, Farcasanu M, Woods VA, McCord LA, Lee D, Shang W, Deprez-Poulain R, Deprez B, Liu DR, Koide A, Koide S, Kossiakoff AA, Li S, Carragher B, Potter CS, Tang WJ

eLife (2018) 7 [ Pubmed: 29596046 DOI: doi:10.7554/eLife.33572 ]

EMD-3981
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Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin
Release date: March 21, 2018
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6exv
Q-score: 0.482

Liu X, Farnung L, Wigge C, Cramer P

J Biol Chem (2018) 293 pp. 7189-7194 [ Pubmed: 29550768 DOI: doi:10.1074/jbc.RA118.002545 ]

EMD-7090
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3D View
Cryo-EM structure of human insulin degrading enzyme
Release date: Feb. 7, 2018
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 6bf6
Q-score: 0.162

Zhang Z, Liang WG, Bailey LJ, Tan YZ, Wei H, Wang A, Farcasanu M, Woods VA, McCord LA, Lee D, Shang W, Deprez-Poulain R, Deprez B, Liu DR, Koide A, Koide S, Kossiakoff AA, Li S, Carragher B, Potter CS, Tang WJ

eLife (2018) 7 [ Pubmed: 29596046 DOI: doi:10.7554/eLife.33572 ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [21]
  • Protein [15]
  • Ligand [5]
  • RNA [2]
  • Virus [2]
  • Cell [1]
  • DNA [1]

Organism

  • Homo sapiens [11]
  • Komagataella phaffii [4]
  • Escherichia coli [3]
  • Mus musculus [2]
  • Plasmodium falciparum [2]
  • Saccharolobus solfataricus [1]
  • Adeno-associated virus [1]
  • Synthetic construct [1]
  • Escherichia coli [1]
  • Zika virus [1]
  • Amanita phalloides [1]
  • Escherichia coli [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [5]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [4]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [1]
  • 100-250 kDa [6]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2025 [4]
  • 2021 [1]
  • 2019 [1]
  • 2018 [7]
  • 2017 [8]
  • 2016 [3]

Author by name

  • Bailey LJ [8]
  • Carragher B [8]
  • Deprez B [8]
  • Deprez-poulain R [8]
  • Farcasanu M [8]
  • Koide A [8]
  • Koide S [8]
  • Kossiakoff AA [8]
  • Lee D [8]
  • Li S [8]
  • Liang WG [8]
  • Liu DR [8]
  • Mccord LA [8]
  • Potter CS [8]
  • Potter SC [8]
  • Shang W [8]
  • Tan YZ [8]
  • Tang WJ [8]
  • Wang A [8]
  • Wei H [8]
  • Woods VA [8]
  • Zhang Z [8]
  • Grba DN [4]
  • Hirst J [4]
  • Ivanov BS [4]
  • Lee CS [4]
  • Wright JJ [4]
  • Beckmann R [3]
  • Emerling D [2]
  • Flores-garcia Y [2]
  • Glanville J [2]
  • King CR [2]
  • Ockenhouse CF [2]
  • Oyen D [2]
  • Torres JL [2]
  • Volkmuth W [2]
  • Ward AB [2]
  • Wickles S [2]
  • Wille-reece U [2]
  • Wilson IA [2]
  • Zavala F [2]
  • Agbandje-mckenna M [1]
  • Agbandje-mckenna M [1]
  • Beck M [1]
  • Becker T [1]
  • Bennett AB [1]
  • Bennett AD [1]
  • Berninghausen O [1]
  • Bhattacharya N [1]
  • Biswas C [1]
  • Brun MJ [1]
  • Bulkley D [1]
  • Buschauer R [1]
  • Cai H [1]
  • Chen T [1]
  • Chen W [1]
  • Cheng Y [1]
  • Clarke J [1]
  • Cong Y [1]
  • Craik CS [1]
  • Cramer P [1]
  • Crevenna AH [1]
  • Dang S [1]
  • Dey S [1]
  • Evans AC [1]
  • Fan J [1]
  • Farnung L [1]
  • Feng S [1]
  • Fibriansah G [1]
  • Gerovac M [1]
  • Guenther CM [1]
  • Heuer A [1]
  • Hirai H [1]
  • Ho ML [1]
  • Hollins JJ [1]
  • Iwasaki K [1]
  • Kedrov A [1]
  • Kiosze-becker K [1]
  • Kostyuchenko VA [1]
  • Kwon S [1]
  • Lam M [1]
  • Lamb DC [1]
  • Li D [1]
  • Lim EX [1]
  • Liu X [1]
  • Lok SM [1]
  • Lolicato M [1]
  • Luo Y [1]
  • Ma L [1]
  • Maeda S [1]
  • Matoba K [1]
  • Mihara E [1]
  • Minor DL [1]
  • Miyazaki N [1]
  • Ng TS [1]
  • Nickson AA [1]
  • Nilsson OB [1]
  • Nung Jan Y [1]
  • Nurenberg-goloub E [1]
  • Ooi JS [1]

Author by ORCID

  • Tan YZ [8]
  • Lee D [8]
  • Carragher B [8]
  • Deprez-poulain R [8]
  • Tang WJ [8]
  • Potter CS [8]
  • Hirst J [4]
  • Wright JJ [4]
  • Ivanov BS [4]
  • Grba DN [4]
  • Lee CS [4]
  • Torres JL [2]
  • Thompson S [1]
  • Cai H [1]
  • Chen W [1]
  • Kedrov A [1]
  • Dang S [1]
  • Cheng Y [1]
  • Lamb DC [1]
  • Tampe R [1]
  • Lolicato M [1]
  • Bulkley D [1]
  • Wan G [1]
  • Von Heijne G [1]
  • Ye W [1]
  • Miyazaki N [1]
  • Qi L [1]
  • Crevenna AH [1]
  • Gerovac M [1]
  • Beck M [1]
  • Farnung L [1]
  • Peters CJ [1]
  • Fibriansah G [1]
  • Wu H [1]
  • Sengupta J [1]
  • Tien J [1]
  • Lok SM [1]
  • Li D [1]
  • Ooi JS [1]

Journal

  • ELIFE [8]
  • SCI ADV [4]
  • CELL REP [2]
  • NATURE [2]
  • PNAS [2]
  • J BIOL CHEM [1]
  • J CELL BIOL [1]
  • MOL THER [1]
  • NAT COMMUN [1]
  • NAT STRUCT MOL BIOL [1]
  • STRUCTURE [1]

Software

  • RELION [16]
  • CRYOSPARC [5]
  • SPIDER [4]
  • CTFFIND [3]
  • EMAN [3]
  • EMAN2 [1]

Microscope

  • FEI TITAN KRIOS [14]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI SPIRIT [3]
  • FEI POLARA 300 [1]
  • FEI TITAN [1]
  • HITACHI H-9500SD [1]

Electron Source

  • FIELD EMISSION GUN [20]
  • LAB6 [3]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON III 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • TVIPS TEMCAM-F416 4K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • FEI EAGLE 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • TVIPS TEMCAM-F224 2K X 2K [1]
  • TVIPS TEMCAM-F816 8K X 8K [1]

External links

  • PDB [17]
  • InterPro [15]
  • PDBe-Kb [15]
  • Pfam [15]
  • UniProt [15]
  • Gene Ontology [14]
  • AlphaFold DB [13]
  • ChEBI [5]
  • Complex Portal [5]
  • CATH [4]
  • ChEMBL [4]
  • DrugBank [4]
  • SCOP2 [2]
  • EMPIAR [1]