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Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]
  • DNA [7]
  • RNA [7]
  • Cellular component [2]
  • Other [2]
  • Tissue [1]

Organism

  • Escherichia coli [7]
  • Homo sapiens [3]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Bacillus subtilis [1]
  • Bos taurus [1]

EM Method

  • Single-particle [12]
  • Tomography [1]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [2]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2023 [7]
  • 2022 [2]
  • 2020 [1]
  • 2018 [2]

Author by name

  • Chauvier A [7]
  • Deb I [7]
  • Ellinger E [7]
  • Frank AT [7]
  • Meze K [7]
  • Ohi MD [7]
  • Porta JC [7]
  • Walter NG [7]
  • Barford D [2]
  • Cao L [2]
  • Dong Y [2]
  • He Y [2]
  • Shi X [2]
  • Tang H [2]
  • Yang J [2]
  • Zhang Z [2]
  • Fernandez-vazquez E [1]
  • Frank RAW [1]
  • Lovatt C [1]
  • Lovatt CA [1]
  • Manka SW [1]
  • Moores CA [1]
  • O Sullivan T [1]
  • Ortega-De San Luis C [1]
  • Ryan TJ [1]
  • Vazquez-fernandez E [1]

Author by ORCID

  • Walter NG [7]
  • Meze K [7]
  • Ohi MD [7]
  • Chauvier A [7]
  • Moores CA [1]
  • Manka SW [1]

Journal

  • NAT STRUCT MOL BIOL [7]
  • TO BE PUBLISHED [3]
  • J MOL BIOL [2]
  • EMBO REP [1]
  • STRUCTURE [1]

Software

  • RELION [4]
  • CRYOSPARC [1]
  • IMOD [1]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [3]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON III 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • DrugBank [10]
  • PDB [10]
  • PDBe-Kb [10]
  • UniProt [10]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • ChEMBL [6]
  • Complex Portal [3]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-53931
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3D View
Memory engram synapse 3D molecular architecture visualized by cryoCLEM-guided cryoET
Release date: Nov. 26, 2025
EM Method: Tomography

Lovatt C, O'Sullivan T, Ortega-de San Luis C, Ryan TJ, Frank RAW

Structure (2026) 34 pp. 100-112.e3 [ DOI: doi:10.1016/j.str.2025.10.014 Pubmed: 41240908 ]

EMD-28845
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3D View
Cryo-EM consensus structure of Escherichia coli que-PEC paused elongation complex RNA Polymerase minus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8f3c

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29640
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3D View
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC paused elongation complex RNA Polymerase minus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g00

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29676
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3D View
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC paused elongation complex RNA Polymerase minus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g1s

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29683
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3D View
Cryo-EM structure of 3DVA component 2 of Escherichia coli que-PEC paused elongation complex RNA Polymerase minus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g2w

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29732
Download Map
3D View
Cryo-EM consensus structure of Escherichia coli que-PEC paused elongation complex RNA Polymerase plus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8g4w

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29812
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3D View
Cryo-EM structure of 3DVA component 0 of Escherichia coli que-PEC paused elongation complex RNA Polymerase plus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8g7e

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-29859
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3D View
Cryo-EM structure of 3DVA component 1 of Escherichia coli que-PEC paused elongation complex RNA Polymerase plus preQ1 ligand
CryoEM
Release date: June 21, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8g8z

Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG

Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]

EMD-15123
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3D View
S. cerevisiae APC/C-Cdh1 complex
CryoEM
Release date: Aug. 31, 2022
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8a3t

Barford D, Vazquez-Fernandez E, Zhang Z, Yang J

To Be Published

EMD-15199
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S. cerevisiae apo unphosphorylated APC/C
CryoEM
Release date: Aug. 31, 2022
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8a5y

Barford D, Fernandez-Vazquez E, Zhang Z, Yang J

To Be Published

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]
  • DNA [7]
  • RNA [7]
  • Cellular component [2]
  • Other [2]
  • Tissue [1]

Organism

  • Escherichia coli [7]
  • Homo sapiens [3]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Bacillus subtilis [1]
  • Bos taurus [1]

EM Method

  • Single-particle [12]
  • Tomography [1]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [2]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [7]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2023 [7]
  • 2022 [2]
  • 2020 [1]
  • 2018 [2]

Author by name

  • Chauvier A [7]
  • Deb I [7]
  • Ellinger E [7]
  • Frank AT [7]
  • Meze K [7]
  • Ohi MD [7]
  • Porta JC [7]
  • Walter NG [7]
  • Barford D [2]
  • Cao L [2]
  • Dong Y [2]
  • He Y [2]
  • Shi X [2]
  • Tang H [2]
  • Yang J [2]
  • Zhang Z [2]
  • Fernandez-vazquez E [1]
  • Frank RAW [1]
  • Lovatt C [1]
  • Lovatt CA [1]
  • Manka SW [1]
  • Moores CA [1]
  • O Sullivan T [1]
  • Ortega-De San Luis C [1]
  • Ryan TJ [1]
  • Vazquez-fernandez E [1]

Author by ORCID

  • Walter NG [7]
  • Meze K [7]
  • Ohi MD [7]
  • Chauvier A [7]
  • Moores CA [1]
  • Manka SW [1]

Journal

  • NAT STRUCT MOL BIOL [7]
  • TO BE PUBLISHED [3]
  • J MOL BIOL [2]
  • EMBO REP [1]
  • STRUCTURE [1]

Software

  • RELION [4]
  • CRYOSPARC [1]
  • IMOD [1]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [3]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [13]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]
  • FEI FALCON III 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • DrugBank [10]
  • PDB [10]
  • PDBe-Kb [10]
  • UniProt [10]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • ChEMBL [6]
  • Complex Portal [3]