Electron Microscopy Data Bank

Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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image_reconstruction_resolution_method:"DIFFRACTION PATTERN/LAYERLINES"

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Current Database

Current status

Sample type

Organism

Homo sapiens [56]
Synthetic construct [50]
Parengyodontium album [50]
Bos taurus [21]
Rattus norvegicus [17]
Gallus gallus [10]
Saccharomyces cerevisiae [4]
Aeropyrum pernix [3]
Sus scrofa [3]
Ovis aries [3]
Mus musculus [2]
Human immunodeficiency virus 1 [2]
Sulfolobus acidocaldarius [2]
Severe acute respiratory syndrome coronavirus [2]
Amycolatopsis orientalis [2]
Sulfolobus islandicus [2]
Escherichia coli [2]
Caenorhabditis elegans [2]
Limisphaera ngatamarikiensis [1]
Bacillus cereus [1]
Bacillus thermoproteolyticus [1]
Streptomyces azureus [1]
Hathewaya histolytica [1]
Mycobacterium tuberculosis [1]
Pyrococcus furiosus [1]
Deinococcus radiodurans [1]
Clostridioides difficile [1]
Mycoplasma pneumoniae [1]
Pseudomonas syringae [1]
(no species) [1]
Arabidopsis thaliana [1]
Myodes glareolus [1]
Thaumatococcus daniellii [1]
Hypocrea jecorina [1]
Clostridioides difficile [1]
Cydia pomonella granulosis virus [1]
Vibrio alginolyticus [1]
Spodoptera frugiperda [1]
Danio rerio [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Gonen T [130]
Hattne J [102]
Martynowycz MW [90]
Rodriguez JA [52]
Shi D [46]
Clabbers MTB [30]
Sawaya MR [29]
Cascio D [28]
Zee CT [27]
Gallagher-jones M [25]
Glynn C [25]
Eisenberg DS [20]
Wang MW [19]
Yang D [19]
Zhou Q [19]
Reyes FE [17]
Unge J [17]
Zhou QT [16]
Nannenga BL [14]
Yang DH [14]
Zhao F [14]
Chen Y [13]
Dai A [13]
Xia T [13]
Xu HE [13]
Zhao W [13]
Jensen GJ [12]
Rodriguez J [12]
Zhao FH [12]
Dai AT [11]
Eisenberg D [11]
Fulton TJ [11]
Jones CG [11]
Nelson HM [11]
Stoltz BM [11]
Boyer DR [10]
Cong Z [10]
Feng W [10]
Fulton T [10]
Liang A [10]
Seidler P [10]
Xu Y [10]
Zhang Y [10]
Zou X [9]
Cai X [8]
Calero G [8]
Cong ZT [8]
Feng WB [8]
Hang K [8]
Hinck AP [8]
Hinck CS [8]
Kim SK [8]
Li X [8]
Nicolas WJ [8]
Shiriaeva A [8]
Weiss SC [8]
Zhang C [8]
Zhao L [8]
Zhao LH [8]
Zhou H [8]
De La Cruz Mj [8]
Chen LN [7]
Fujiyoshi Y [7]
Liang AY [7]
Cai XQ [6]
Guenther EL [6]
Hang KN [6]
Luo Z [6]
Tani K [6]
Wang Y [6]
Weaver SJ [6]
Zhao Y [6]
Albers SV [5]
Arnold FH [5]
Cao E [5]
Chang R [5]
Chen CW [5]
Danelius E [5]
Daum B [5]
De Vivo M [5]
Jiang L [5]
Li H [5]
Li J [5]
Ming Q [5]
Vidossich P [5]
Wang J [5]
Wang M [5]
Wu B [5]
Xu P [5]
Xu YN [5]
Yan J [5]
Yan JH [5]
Zhao YX [5]
Agard D [4]
Arigovindan M [4]
Cao EH [4]
Collazo MJ [4]
Croxford M [4]
Elbaum M [4]
Evans JE [4]

Author by ORCID

Hattne J [102]
Martynowycz MW [87]
Gonen T [42]
Sawaya MR [29]
Gallagher-jones M [25]
Clabbers MTB [24]
Wang MW [19]
Yang D [19]
Unge J [17]
Fulton TJ [11]
Eisenberg DS [11]
Xu HE [10]
Nannenga BL [9]
Zhou Q [9]
Shiriaeva A [8]
De La Cruz Mj [8]
Zhang Y [7]
Rodriguez JA [6]
Zhou H [6]
Tani K [6]
Wu B [5]
Daum B [5]
Arnold FH [5]
Zhao L [5]
Albers SV [5]
Xu P [5]
Quax TEF [4]
Elbaum M [4]
Sanders K [4]
Gambelli L [4]
Mclaren M [4]
Gold VAM [4]
Zhao LH [4]
Li X [4]
Croxford M [4]
Trinh H [4]
Agard D [4]
Villa E [4]
Bathgate RAD [3]
Xu Y [3]
Lu J [3]
Eric Xu H [3]
Porter NJ [3]
Liu H [3]
Spahiu L [2]
Miao J [2]
Bucker R [2]
Zhao Y [2]
Cascio D [2]
Seidler PM [2]
Fan Q [2]
Chen Y [2]
Gevorkov Y [2]
Murata K [2]
Jiang Y [2]
Schulz EC [2]
Penczek PA [2]
Hebert H [2]
Cascio D [2]
Shen J [2]
Dick M [2]
Griner S [2]
Griner SL [2]
Hogan-lamarre P [2]
Sarai NS [2]
Leslie AG [2]
Zhang C [2]
Danelius E [2]
Wang J [2]
Chen Y [2]
Messerschmidt M [2]
Krotee P [2]
Warmack RA [2]
Liu J [2]
Ruiz Munevar Mj [2]
Chen CW [2]
Dwayne Miller Rj [2]
Oshima A [2]
Helguera GF [2]
Liu Q [2]
Jegerschold C [2]
Powell SM [2]
Abe K [2]
Feng W [2]
Cheng X [2]
Cao E [2]
Mehrabi P [2]
Sangwan S [2]
De Vivo M [2]
Kong J [1]
Suzuki H [1]
Jiang YL [1]
Novikova IV [1]
Vercellino I [1]
Vonck J [1]
Vaz F [1]
Santiveri M [1]
Nicolas WJ [1]
Li Y [1]
Iadanza MG [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 201. Page 1 of 21

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EMD-70378

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3D View

MicroED structure of proteinase K without energy filtering

Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odv
Q-score: 0.763

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ Pubmed: 40370641 DOI: doi:10.1063/4.0000755 ]

EMD-70379

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3D View

MicroED structure of proteinase K with energy filtering

Release date: May 28, 2025
Resolution: 1.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 9odw
Q-score: 0.767

Clabbers MTB, Gonen T

Struct Dyn. (2025) 12 pp. 034702-034702 [ Pubmed: 40370641 DOI: doi:10.1063/4.0000755 ]

EMD-45428

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MicroED structure of the human MP20 protein

Release date: May 21, 2025
Resolution: 3.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cbv
Q-score: 0.471

Nicolas WJ, Shiriaeva A, Martynowycz MW, Grey AC, Ruma YN, Donaldson PJ, Gonen T

Nat Commun (2025) 16 pp. 2977-2977 [ Pubmed: 40140346 DOI: doi:10.1038/s41467-025-57903-6 ]

EMD-46871

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Structure of proteinase K from energy-filtered MicroED data

Release date: March 19, 2025
Resolution: 1.09 Å
EM Method: Electron Crystallography
Fitted PDBs: 9dho

Clabbers MTB, Hattne J, Martynowycz MW, Gonen T

Nat Commun (2025) 16 pp. 2247-2247 [ DOI: doi:10.1038/s41467-025-57425-1 Pubmed: 40050283 ]

EMD-38616

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BA.5 Spike complex with CR9

Release date: Feb. 12, 2025
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8xsd
Q-score: -0.008

Chen Z, Feng L, Wang L, Zhang L, Zheng B, Fu H, Li F, Liu L, Lv Q, Deng R, Xu Y, Hu Y, Zheng J, Qin C, Bao L, Wang X, Jin Q

Signal Transduct Target Ther (2025) 10 pp. 14-14 [ DOI: doi:10.1038/s41392-024-02114-6 Pubmed: 39800731 ]

EMD-19403

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Single-particle cryo-EM of the P1-P40P90 heterodimer from Mycoplasma pneumoniae below 10 Angstrom resolution.

Release date: Feb. 5, 2025
Resolution: 12.0 Å
EM Method: Single-particle

Kawamoto A, Vizarraga D, Marcos-Silva M, Martin J, Makino F, Miyata T, Roel J, Marcos E, Aparicio D, Fita I, Miyata M, Pinol J, Namba K, Kenri T

bioRxiv (2023) [ DOI: doi:10.1101/2023.07.31.551205 ]

EMD-39952

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Focused map for area 2 of type III CRISPR-associated deaminase in complex cA4

Release date: Dec. 25, 2024
Resolution: 2.61 Å
EM Method: Single-particle

Li Y, Li Z, Yan P, Hua C, Kong J, Wu W, Cui Y, Duan Y, Li S, Li G, Ji S, Chen Y, Zhao Y, Yang P, Hu C, Lu M, Chen M, Xiao Y

Science (2025) 387 pp. eadr0393-eadr0393 [ Pubmed: 39666823 DOI: doi:10.1126/science.adr0393 ]

EMD-44453

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MicroED structure of bovine liver catalase with missing cone solved by suspended drop

Release date: Sept. 18, 2024
Resolution: 4.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 9bdj
Q-score: 0.483

Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T

J Struct Biol X (2024) 9 pp. 100102-100102 [ Pubmed: 38962493 DOI: doi:10.1016/j.yjsbx.2024.100102 ]

EMD-45623

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MicroED structure of the C11 cysteine protease clostripain

Release date: Aug. 14, 2024
Resolution: 2.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 9cip

Ruma YN, Bu G, Hattne J, Gonen T

J Struct Biol X (2024) 10 pp. 100107-100107 [ DOI: doi:10.1016/j.yjsbx.2024.100107 Pubmed: 39100863 ]

EMD-43144

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MicroED structure of SARS-CoV-2 main protease MPro/3CLPro with missing cone eliminated by suspended drop

Release date: July 17, 2024
Resolution: 2.15 Å
EM Method: Electron Crystallography
Fitted PDBs: 8vd7
Q-score: 0.717

Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T

J Struct Biol X (2024) 9 pp. 100102-100102 [ Pubmed: 38962493 DOI: doi:10.1016/j.yjsbx.2024.100102 ]

Sort by: Download

Showing 1 - 10 of 201. Page 1 of 21

Display:

Statistics

Download

Select database:

EMDB [201]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [56]
Synthetic construct [50]
Parengyodontium album [50]
Bos taurus [21]
Rattus norvegicus [17]
Gallus gallus [10]
Saccharomyces cerevisiae [4]
Aeropyrum pernix [3]
Sus scrofa [3]
Ovis aries [3]
Mus musculus [2]
Human immunodeficiency virus 1 [2]
Sulfolobus acidocaldarius [2]
Severe acute respiratory syndrome coronavirus [2]
Amycolatopsis orientalis [2]
Sulfolobus islandicus [2]
Escherichia coli [2]
Caenorhabditis elegans [2]
Limisphaera ngatamarikiensis [1]
Bacillus cereus [1]
Bacillus thermoproteolyticus [1]
Streptomyces azureus [1]
Hathewaya histolytica [1]
Mycobacterium tuberculosis [1]
Pyrococcus furiosus [1]
Deinococcus radiodurans [1]
Clostridioides difficile [1]
Mycoplasma pneumoniae [1]
Pseudomonas syringae [1]
(no species) [1]
Arabidopsis thaliana [1]
Myodes glareolus [1]
Thaumatococcus daniellii [1]
Hypocrea jecorina [1]
Clostridioides difficile [1]
Cydia pomonella granulosis virus [1]
Vibrio alginolyticus [1]
Spodoptera frugiperda [1]
Danio rerio [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Gonen T [130]
Hattne J [102]
Martynowycz MW [90]
Rodriguez JA [52]
Shi D [46]
Clabbers MTB [30]
Sawaya MR [29]
Cascio D [28]
Zee CT [27]
Gallagher-jones M [25]
Glynn C [25]
Eisenberg DS [20]
Wang MW [19]
Yang D [19]
Zhou Q [19]
Reyes FE [17]
Unge J [17]
Zhou QT [16]
Nannenga BL [14]
Yang DH [14]
Zhao F [14]
Chen Y [13]
Dai A [13]
Xia T [13]
Xu HE [13]
Zhao W [13]
Jensen GJ [12]
Rodriguez J [12]
Zhao FH [12]
Dai AT [11]
Eisenberg D [11]
Fulton TJ [11]
Jones CG [11]
Nelson HM [11]
Stoltz BM [11]
Boyer DR [10]
Cong Z [10]
Feng W [10]
Fulton T [10]
Liang A [10]
Seidler P [10]
Xu Y [10]
Zhang Y [10]
Zou X [9]
Cai X [8]
Calero G [8]
Cong ZT [8]
Feng WB [8]
Hang K [8]
Hinck AP [8]
Hinck CS [8]
Kim SK [8]
Li X [8]
Nicolas WJ [8]
Shiriaeva A [8]
Weiss SC [8]
Zhang C [8]
Zhao L [8]
Zhao LH [8]
Zhou H [8]
De La Cruz Mj [8]
Chen LN [7]
Fujiyoshi Y [7]
Liang AY [7]
Cai XQ [6]
Guenther EL [6]
Hang KN [6]
Luo Z [6]
Tani K [6]
Wang Y [6]
Weaver SJ [6]
Zhao Y [6]
Albers SV [5]
Arnold FH [5]
Cao E [5]
Chang R [5]
Chen CW [5]
Danelius E [5]
Daum B [5]
De Vivo M [5]
Jiang L [5]
Li H [5]
Li J [5]
Ming Q [5]
Vidossich P [5]
Wang J [5]
Wang M [5]
Wu B [5]
Xu P [5]
Xu YN [5]
Yan J [5]
Yan JH [5]
Zhao YX [5]
Agard D [4]
Arigovindan M [4]
Cao EH [4]
Collazo MJ [4]
Croxford M [4]
Elbaum M [4]
Evans JE [4]

Author by ORCID

Hattne J [102]
Martynowycz MW [87]
Gonen T [42]
Sawaya MR [29]
Gallagher-jones M [25]
Clabbers MTB [24]
Wang MW [19]
Yang D [19]
Unge J [17]
Fulton TJ [11]
Eisenberg DS [11]
Xu HE [10]
Nannenga BL [9]
Zhou Q [9]
Shiriaeva A [8]
De La Cruz Mj [8]
Zhang Y [7]
Rodriguez JA [6]
Zhou H [6]
Tani K [6]
Wu B [5]
Daum B [5]
Arnold FH [5]
Zhao L [5]
Albers SV [5]
Xu P [5]
Quax TEF [4]
Elbaum M [4]
Sanders K [4]
Gambelli L [4]
Mclaren M [4]
Gold VAM [4]
Zhao LH [4]
Li X [4]
Croxford M [4]
Trinh H [4]
Agard D [4]
Villa E [4]
Bathgate RAD [3]
Xu Y [3]
Lu J [3]
Eric Xu H [3]
Porter NJ [3]
Liu H [3]
Spahiu L [2]
Miao J [2]
Bucker R [2]
Zhao Y [2]
Cascio D [2]
Seidler PM [2]
Fan Q [2]
Chen Y [2]
Gevorkov Y [2]
Murata K [2]
Jiang Y [2]
Schulz EC [2]
Penczek PA [2]
Hebert H [2]
Cascio D [2]
Shen J [2]
Dick M [2]
Griner S [2]
Griner SL [2]
Hogan-lamarre P [2]
Sarai NS [2]
Leslie AG [2]
Zhang C [2]
Danelius E [2]
Wang J [2]
Chen Y [2]
Messerschmidt M [2]
Krotee P [2]
Warmack RA [2]
Liu J [2]
Ruiz Munevar Mj [2]
Chen CW [2]
Dwayne Miller Rj [2]
Oshima A [2]
Helguera GF [2]
Liu Q [2]
Jegerschold C [2]
Powell SM [2]
Abe K [2]
Feng W [2]
Cheng X [2]
Cao E [2]
Mehrabi P [2]
Sangwan S [2]
De Vivo M [2]
Kong J [1]
Suzuki H [1]
Jiang YL [1]
Novikova IV [1]
Vercellino I [1]
Vonck J [1]
Vaz F [1]
Santiveri M [1]
Nicolas WJ [1]
Li Y [1]
Iadanza MG [1]

Journal

Software

Microscope

Electron Source

Film or detector model

External links