Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Filter By
Current Database
- EMDB [10199]
Current status
- REL [10199]
Sample type
- Complex [6043]
- Protein [6025]
- Sample [2778]
- Ligand [2297]
- Virus [1341]
- Cellular component [862]
- RNA [762]
- Cell [468]
- DNA [404]
- Other [52]
- Tissue [48]
- Em label [1]
Organism
- Homo sapiens [2349]
- Synthetic construct [1008]
- Mus musculus [662]
- Escherichia coli [633]
- Saccharomyces cerevisiae [553]
- Bos taurus [283]
- Severe acute respiratory syndrome coronavirus [253]
- Rattus norvegicus [235]
- Escherichia coli [180]
- Human immunodeficiency virus 1 [176]
- Oryctolagus cuniculus [163]
- Sus scrofa [137]
- Enterobacteria phage m13 [130]
- Chlamydomonas reinhardtii [129]
- Xenopus laevis [96]
- Thermus thermophilus [93]
- Saccharomyces cerevisiae [78]
- Tetrahymena thermophila [77]
- Bacillus sp. (strain ps3) [62]
- Drosophila melanogaster [61]
- Gallus gallus [61]
- Torpedo marmorata [46]
- Enterobacteria phage t4 [44]
- Arabidopsis thaliana [42]
- Human immunodeficiency virus [41]
- Mycobacterium tuberculosis [39]
- Bacillus subtilis [38]
- Euglena gracilis [37]
- Cricetulus griseus [36]
- Escherichia virus t7 [36]
- Thermus thermophilus [36]
- Influenza a virus [35]
- Trichomonas vaginalis [35]
- Staphylococcus phage 812 [34]
- Danio rerio [34]
- Lama glama [34]
- Salmonella enterica [33]
- Enterovirus c [32]
- Macaca mulatta [31]
- Staphylococcus aureus [30]
- Vicugna pacos [30]
- Rous sarcoma virus [29]
- Enterovirus d [29]
- Escherichia coli [29]
- Klebsiella pneumoniae [28]
- Mycobacterium tuberculosis [27]
- Caenorhabditis elegans [27]
- Human herpesvirus 1 [26]
- Hepatitis b virus [26]
- Pseudomonas phage phi6 [26]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Pseudomonas phage jbd30 [24]
- Mycolicibacterium smegmatis [23]
- Myxococcus xanthus [23]
- Spinacia oleracea [23]
- Escherichia coli [23]
- Salmonella phage p22 [22]
- Mycolicibacterium smegmatis [22]
- Halothiobacillus neapolitanus [22]
- Tobacco mosaic virus [21]
- Saccharomyces cerevisiae [21]
- Sus scrofa [21]
- Human mastadenovirus c [20]
- Plasmodium falciparum [20]
- Bacillus phage spp1 [19]
- Rice dwarf virus [19]
- Chaetomium thermophilum [19]
- Pyrococcus furiosus [19]
- Chikungunya virus [19]
- Enterovirus a [19]
- Chaetomium thermophilum [19]
- Vaccinia virus [18]
- Campylobacter jejuni [18]
- Pseudomonas aeruginosa [18]
- Bacillus subtilis [17]
- Vibrio cholerae [17]
- Avian infectious bursal disease virus [16]
- Pseudomonas aeruginosa [16]
- Thermoplasma acidophilum [16]
- Trypanosoma brucei [16]
- Shigella flexneri [16]
- Latrodectus tredecimguttatus [16]
- Mycolicibacterium thermoresistibile [15]
- Primate t-lymphotropic virus 1 [15]
- Staphylococcus phage p68 [15]
- Human herpesvirus 8 [15]
- (no species) [14]
- (no species) [14]
- Candidatus arthromitus sp. sfb-rat-yit [14]
- Human mastadenovirus d [14]
- Nudaurelia capensis omega virus [14]
- Caulobacter vibrioides [14]
- Schizosaccharomyces pombe [14]
- Thermomyces lanuginosus [14]
- Human herpesvirus 1 [13]
- Unidentified adenovirus [13]
- Cypovirus 1 [13]
- Rhinovirus b [13]
- Taura syndrome virus [13]
- Eastern chimpanzee simian foamy virus [13]
EM Method
- Single-particle [7091]
- Tomography [1691]
- Subtomogram averaging [805]
- Helical reconstruction [590]
- Electron Crystallography [22]
Resolution
- < 2Å [84]
- ≥ 2Å and < 3Å [1191]
- ≥ 3Å and < 4Å [2499]
- ≥ 4Å and < 5Å [790]
- ≥ 5Å and < 6Å [193]
- ≥ 6Å and < 8Å [567]
- ≥ 8Å and < 12Å [801]
- ≥ 12Å and < 16Å [732]
- ≥ 16Å and < 20Å [460]
- ≥ 20Å and < 30Å [1009]
- ≥ 30Å [1149]
Model molecular weight
- 0-50 kDa [110]
- 50-100 kDa [257]
- 100-250 kDa [1094]
- 250-500 kDa [1042]
- 500-1000 kDa [611]
- 1-2 MDa [346]
- 2-5 MDa [320]
- 5-10 MDa [180]
- > 10 MDa [162]
Release Date
- 2025 [1471]
- 2024 [1225]
- 2023 [972]
- 2022 [764]
- 2021 [640]
- 2020 [634]
- 2019 [593]
- 2018 [633]
- 2017 [308]
- 2016 [444]
- 2015 [412]
- 2014 [403]
- 2013 [414]
- 2012 [339]
- 2011 [204]
- 2010 [178]
- 2009 [170]
- 2008 [43]
- 2007 [118]
- 2006 [111]
- 2005 [43]
- 2004 [30]
- 2003 [42]
- 2002 [8]
Author by name
- Liu J [985]
- Ren G [951]
- Zhang M [537]
- Wu H [372]
- Wang S [363]
- Hu Z [348]
- Gang O [337]
- Ward AB [268]
- Lei D [267]
- Potter CS [245]
- Carragher B [244]
- Chiu W [224]
- Zhang X [199]
- Mcrae EKS [195]
- Zhou L [191]
- Andersen ES [189]
- Geary C [186]
- Kishikawa J [174]
- Plevka P [161]
- Zhou ZH [151]
- Kato T [146]
- Kishikawa JI [145]
- Nogales E [140]
- Rudenko G [136]
- Fuzik T [132]
- Huang C [132]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Liu JF [131]
- Marras A [131]
- Marras AE [131]
- Mitsuoka K [131]
- Rubinstein JL [131]
- Su H [131]
- Su HJ [131]
- White MA [131]
- Misra A [130]
- Reddy S [130]
- Lyumkis D [129]
- Baumeister W [128]
- Briggs JAG [127]
- Zhang Y [126]
- Lander GC [125]
- Kotecha A [124]
- Yokoyama K [123]
- Rossmann MG [121]
- Liu Y [120]
- Antanasijevic A [116]
- Reddy MVVVS [115]
- Moore JP [113]
- Nakano A [112]
- Sanders RW [112]
- Baker D [111]
- Grigorieff N [111]
- Copps J [110]
- Greber BJ [110]
- Liu H [110]
- Montefiori DC [108]
- Wang Y [105]
- Frank J [103]
- Li S [103]
- Wang L [101]
- Wilson IA [101]
- Burton DR [98]
- Novacek J [97]
- Saibil HR [97]
- Plitzko JM [90]
- Sewall LM [89]
- Guo H [85]
- Liu X [85]
- Tan YZ [85]
- De La Pena At [85]
- Namba K [84]
- Orlova EV [84]
- King NP [82]
- Medalia O [82]
- Huiskonen JT [81]
- Wang J [81]
- Caston JR [80]
- Engel BD [80]
- Lei M [80]
- Ludtke SJ [80]
- Marino JP [80]
- Zhang K [80]
- Beckmann R [78]
- Kwong PD [78]
- Schur FKM [77]
- Veesler D [76]
- Feng J [75]
- Wang Q [74]
- Acharya P [73]
- Chen S [73]
- Graham BS [72]
- Jiang W [72]
- Mielke T [72]
- Schmid MF [72]
- Raunser S [71]
- Cushing VI [70]
- Campbell MG [69]
Author by ORCID
- Ren G [915]
- Liu J [808]
- Chiu W [195]
- Andersen ES [188]
- Geary C [186]
- Zhang M [174]
- Plevka P [157]
- Kishikawa JI [145]
- Zhou L [131]
- Castro CE [131]
- Ward AB [131]
- Marras AE [131]
- Su HJ [131]
- Fuzik T [129]
- Kotecha A [119]
- Carragher B [115]
- White MA [112]
- Greber BJ [108]
- Rubinstein JL [108]
- Grigorieff N [101]
- Baker D [100]
- Briggs JAG [99]
- Yokoyama K [98]
- Kato T [96]
- Copps J [95]
- Lander GC [87]
- Tan YZ [85]
- Orlova EV [84]
- Lei M [80]
- King NP [80]
- Plitzko JM [80]
- Novacek J [80]
- Huiskonen JT [78]
- Ludtke SJ [75]
- Kwong PD [74]
- Caston JR [72]
- Engel BD [70]
- Cushing VI [70]
- Crispin M [69]
- Campbell MG [69]
- Raunser S [68]
- Medalia O [67]
- Chang YW [66]
- Ali S [65]
- Torres JL [65]
- Guo H [64]
- Schur FKM [64]
- Jiang W [63]
- Schmid MF [63]
- Koh AF [62]
- Butcher SJ [62]
- Allen JD [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Nakanishi A [60]
- Luque D [60]
- Schoehn G [58]
- Bottcher B [58]
- Hrebik D [58]
- Stuart DI [57]
- Cheng Y [55]
- Zhang X [55]
- Zhou ZH [55]
- Williamson JR [55]
- Armache JP [54]
- Zhou L [54]
- Borgnia MJ [52]
- Hillen HS [52]
- Cottrell CA [52]
- Pantucek R [52]
- Park E [51]
- Edwards RJ [51]
- Mahamid J [50]
- Paulino C [50]
- Noble AJ [49]
- Frost A [49]
- Gao N [48]
- Venugopal H [47]
- Baumeister W [47]
- Antanasijevic A [46]
- Labranche C [46]
- Bangaru S [45]
- Boehringer D [45]
- Lee SY [44]
- Conway JF [43]
- Pehau-arnaudet G [42]
- Gazi A [42]
- Clare DK [42]
- Chipman PR [42]
- Llorca O [41]
- Ayme G [41]
- Grunewald K [41]
- Hu Y [41]
- Lafaye P [41]
- Bui KH [41]
- Namba K [41]
- Villa E [41]
- Graham BS [40]
- Sartori-rupp A [40]
Journal
- NAT COMMUN [1759]
- TO BE PUBLISHED [950]
- PNAS [939]
- NATURE [614]
- BIORXIV [514]
- NAT STRUCT MOL BIOL [511]
- CELL [442]
- ELIFE [438]
- SCIENCE [392]
- STRUCTURE [390]
- J MOL BIOL [356]
- J VIROL [266]
- MOL CELL [240]
- SCI ADV [207]
- EMBO J [194]
- SCI REP [153]
- J BIOL CHEM [141]
- J STRUCT BIOL [141]
- CELL REP [127]
- NUCLEIC ACIDS RES [120]
- PLOS PATHOG [103]
- COMMUN BIOL [102]
- ACTA CRYSTALLOGR D STRUCT BIOL [91]
- J CELL BIOL [82]
- NAT METHODS [78]
- NAT CHEM BIOL [64]
- PLOS BIOL [56]
- FRONT ENDOCRINOL [51]
- NAT MICROBIOL [51]
- PROTEIN SCI [41]
- IMMUNITY [36]
- PNAS NEXUS [36]
- PLOS ONE [34]
- VIROLOGY [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- IUCRJ [31]
- EMBO REP [30]
- MOL BIOL CELL [29]
- DEV CELL [28]
- CELL HOST MICROBE [27]
- CELL RES [27]
- INT J MOL SCI [25]
- NAT PLANTS [22]
- ACS NANO [21]
- J.MOL.CELL.CARDIOL. [20]
- J BACTERIOL [19]
- J CELL SCI [19]
- J STRUCT BIOL X [19]
- MBIO [19]
- NAT NANOTECHNOL [19]
- NPJ VACCINES [19]
- SCI TRANSL MED [19]
- FEBS LETT [18]
- MOL MICROBIOL [18]
- BIOCHEMISTRY [16]
- J AM CHEM SOC [16]
- NAT CATAL [16]
- NAT CELL BIOL [15]
- J MED CHEM [14]
- NAT NEUROSCI [14]
- BIOCHEM J [12]
- J LIPID RES [12]
- PROTEIN CELL [12]
- ADV SCI [11]
- ANGEW CHEM INT ED ENGL [11]
- BLOOD [11]
- NEURON [11]
- OPEN BIOL [11]
- VIRUSES [11]
- GENES DEV [10]
- RES SQ [10]
- RNA [10]
- MICROSC MICROANAL [9]
- BIOMOLECULES [8]
- CURR RES STRUCT BIOL [8]
- ISME J [8]
- LIFE SCI ALLIANCE [8]
- MICROLIFE [8]
- NANOSCALE [8]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- ULTRAMICROSCOPY [8]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
- FRONT MICROBIOL [7]
- PROG BIOPHYS MOL BIOL [7]
- ACS CATAL [6]
- BIOCHIM BIOPHYS ACTA [6]
- BIOPHYS J [6]
- CELL DISCOV [6]
- CELL MICROBIOL [6]
- CURR BIOL [6]
- GENOME BIOL EVOL [6]
- INT J BIOL MACROMOL [6]
- J GEN VIROL [6]
- MOLECULES [6]
- CELL CYCLE [5]
- COMMUN CHEM [5]
- FEBS OPEN BIO [5]
- ISCIENCE [5]
- METHODS [5]
- MICROBIOL IMMUNOL [5]
Software
- RELION [3212]
- CRYOSPARC [2276]
- IMOD [728]
- CTFFIND [637]
- GCTF [579]
- TOMOCTF [512]
- SPIDER [447]
- IPET [418]
- CHIMERA [322]
- EMAN [223]
- FREALIGN [183]
- EMAN2 [147]
- WARP [134]
- DYNAMO [122]
- IMAGIC [121]
- XMIPP [121]
- CISTEM [115]
- MATLAB [73]
- AUTO3DEM [63]
- JSPR [59]
- PEET [58]
- TOMO3D [55]
- ETOMO [54]
- UCSF CHIMERA [51]
- CTFPHASEFLIP [47]
- EMAN2, SPARX [47]
- IMAGIC, SPIDER [42]
- SITUS [42]
- URO [40]
- SPIDER, APPION [39]
- CRYOLO [38]
- NOVACTF [38]
- COOT [37]
- MDFF [36]
- SPARX [35]
- BSOFT [33]
- APPION, SPIDER [32]
- TOM [32]
- UCSF CHIMERAX [32]
- AV3 [29]
- MRC [29]
- PROTOMO [28]
- APPION [27]
- STOPGAP [26]
- EM3DR2 [25]
- EMAN1 [25]
- EMCLARITY [25]
- IHRSR [25]
- IMIRS [25]
- PYTOM [25]
- CHIMERA, SITUS [23]
- PRIISM/IVE [22]
- EMFIT [21]
- J3DR [21]
- SPHIRE [21]
- TOM TOOLBOX [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- O [20]
- CTFTILT [19]
- JALIGN [19]
- SPRING [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- MPSA [18]
- PHENIX [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- CHIMERA, MDFF [17]
- SUBTOM [17]
- CTFFIND3 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- SPIDER, EMAN [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, FREALIGN [14]
- CTFFIND4 [13]
- DIREX [13]
- FREALIX [13]
- IMAGIC-5 [13]
- IMAGIC-5, SPIDER [13]
- IMOD, RAPTOR, PROTOMO [13]
- PHOELIX, SUPRIM [13]
- EMAN, SPIDER [12]
- IMOD, DYNAMO [12]
- SCIPION [12]
- EMAN2, SPIDER, XMIPP [11]
- GAP [11]
- JSPR, EMAN2, EMAN [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPIDER PACKAGE [11]
- SPIDER XMIPP [11]
- SPIDER, IHRSR [11]
- EMAN, XMIPP [10]
- IMOD, BSOFT [10]
- SPARX/EMAN2 [10]
- CHIMERA, COOT [9]
- EMAN1, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
Microscope
- FEI TITAN KRIOS [4757]
- TFS KRIOS [1127]
- FEI TECNAI F20 [916]
- ZEISS LIBRA120PLUS [455]
- FEI POLARA 300 [451]
- FEI TALOS ARCTICA [381]
- TFS GLACIOS [210]
- FEI/PHILIPS CM200FEG [202]
- FEI TECNAI 20 [164]
- FEI TECNAI 12 [156]
- FEI TECNAI F30 [147]
- FEI TECNAI SPIRIT [135]
- JEOL 2200FS [109]
- FEI TITAN [105]
- JEOL CRYO ARM 300 [105]
- JEOL 3200FSC [86]
- FEI/PHILIPS CM300FEG/T [84]
- JEOL 2010F [77]
- FEI/PHILIPS EM420 [46]
- FEI TECNAI ARCTICA [42]
- TFS TALOS [40]
- JEOL 2100 [37]
- FEI/PHILIPS CM120T [35]
- JEOL 2100F [33]
- JEOL 1230 [30]
- FEI/PHILIPS CM200T [24]
- FEI/PHILIPS CM200FEG/ST [21]
- JEOL 1200EXII [21]
- JEOL 3100FFC [17]
- JEOL 4000 [17]
- OTHER [17]
- JEOL 4000EX [16]
- JEOL 1400 [15]
- JEOL 2200FSC [15]
- JEOL 3000SFF [15]
- JEOL 3200FS [14]
- JEOL 1200EX [12]
- TFS TALOS F200C [9]
- FEI/PHILIPS CM200FEG/UT [8]
- JEOL CRYO ARM 200 [8]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 2000EX [6]
- JEOL KYOTO-3000SFF [6]
- FEI/PHILIPS CM12 [5]
- HITACHI H3000 UHVEM [4]
- JEOL 2010 [4]
- JEOL 1010 [3]
- FEI TECNAI 10 [2]
- FEI/PHILIPS CM300FEG/HE [2]
- FEI/PHILIPS EM400 [2]
- JEOL 100CX [2]
- JEOL 1200 [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- TFS TALOS L120C [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- JEOL 3100FEF [1]
- TFS TITAN THEMIS [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [9084]
- LAB6 [959]
- TUNGSTEN HAIRPIN [129]
- OTHER [28]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [1849]
- GATAN K3 BIOQUANTUM 6K X 4K [1717]
- GATAN K3 6K X 4K [1069]
- GATAN ULTRASCAN 4000 4K X 4K [935]
- KODAK SO-163 FILM [907]
- FEI FALCON IV 4K X 4K [568]
- FEI FALCON III 4K X 4K [485]
- FEI FALCON II 4K X 4K [442]
- GATAN K2 QUANTUM 4K X 4K [337]
- TVIPS TEMCAM-F416 4K X 4K [305]
- TFS FALCON 4I 4K X 4K [215]
- GATAN K2 4K X 4K [133]
- OTHER [131]
- FEI EAGLE 4K X 4K [124]
- TVIPS TEMCAM-F415 4K X 4K [99]
- GENERIC GATAN 4K X 4K [83]
- GENERIC CCD [76]
- GATAN ULTRASCAN 1000 2K X 2K [71]
- GENERIC TVIPS 4K X 4K [71]
- DIRECT ELECTRON DE-20 5K X 3K [49]
- GENERIC GATAN [42]
- GATAN K2 BASE 4K X 4K [36]
- GATAN K3 BIOCONTINUUM 6K X 4K [35]
- TVIPS TEMCAM-F816 8K X 8K [34]
- FEI FALCON I 4K X 4K [30]
- TVIPS TEMCAM-F224 2K X 2K [30]
- GATAN MULTISCAN [26]
- FEI EAGLE 2K X 2K [24]
- DIRECT ELECTRON DE-12 4K X 3K [19]
- FEI CETA 4K X 4K [17]
- TVIPS TEMCAM-F216 2K X 2K [16]
- GENERIC GATAN 2K X 2K [15]
- GENERIC CCD 2K X 2K [11]
- GENERIC TVIPS [10]
- KODAK 4489 FILM [9]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC FILM [7]
- AGFA SCIENTA FILM [6]
- DECTRIS ELA 1K X 0.5K [6]
- DIRECT ELECTRON APOLLO 4K X 4K [6]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- GATAN ORIUS SC200 2K X 2K [6]
- GATAN ULTRASCAN 10000 10K X 10K [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ALPINE 2.3K X 3.2K [2]
- GATAN K2 IS 4K X 4K [2]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- SIA 15C 3K X 3K [2]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- UniProt [4446]
- PDB [4147]
- PDBe-Kb [4079]
- AlphaFold DB [3577]
- Pfam [2855]
- InterPro [2829]
- Gene Ontology [2812]
- ChEBI [2113]
- ChEMBL [1895]
- DrugBank [1777]
- Complex Portal [1182]
- EMPIAR [840]
- CATH [103]
- SCOP2 [100]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9mfv
Q-score: 0.378
Geohring IC, Chai P, Iyer BR
To Be Published
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9mfw
Q-score: 0.294
Geohring IC, Chai P, Iyer BR
To Be Published
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9mfx
Q-score: 0.474
Geohring IC, Chai P, Iyer BR
To Be Published
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9mfy
Q-score: 0.463
Geohring IC, Chai P, Iyer BR
To Be Published
Jurgelaitis E, Zagorskaite E, Kopustas A, Asmontas S, Manakova E, Dalgediene I, Tylenyte U, Silanskas A, Toliusis P, Grybauskas A, Tutkus M, Venclovas C, Zaremba M
Cell Res (2025) [ Pubmed: 41298897 DOI: doi:10.1038/s41422-025-01198-1 ]
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9qec
Q-score: 0.564
Feng J, Martin PR, Lecot M, Cronin NB, Matthews-Palmer T, Niedzwiedz W, Greber BJ
To Be Published
Resolution: 3.2 Å
EM Method: Single-particle
Feng J, Martin PR, Lecot M, Cronin NB, Matthews-Palmer T, Niedzwiedz W, Greber BJ
To Be Published
EM Method: Tomography
Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]
EM Method: Tomography
Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]
EM Method: Tomography
Kirchweger P, Seifer S, Wolf SG, Varsano N, Zens B, Schur FK, Elbaum M
bioRxiv (2025) [ DOI: doi:10.1101/2025.11.26.690630 ]
Filter By
Current Database
- EMDB [10199]
Current status
- REL [10199]
Sample type
- Complex [6043]
- Protein [6025]
- Sample [2778]
- Ligand [2297]
- Virus [1341]
- Cellular component [862]
- RNA [762]
- Cell [468]
- DNA [404]
- Other [52]
- Tissue [48]
- Em label [1]
Organism
- Homo sapiens [2349]
- Synthetic construct [1008]
- Mus musculus [662]
- Escherichia coli [633]
- Saccharomyces cerevisiae [553]
- Bos taurus [283]
- Severe acute respiratory syndrome coronavirus [253]
- Rattus norvegicus [235]
- Escherichia coli [180]
- Human immunodeficiency virus 1 [176]
- Oryctolagus cuniculus [163]
- Sus scrofa [137]
- Enterobacteria phage m13 [130]
- Chlamydomonas reinhardtii [129]
- Xenopus laevis [96]
- Thermus thermophilus [93]
- Saccharomyces cerevisiae [78]
- Tetrahymena thermophila [77]
- Bacillus sp. (strain ps3) [62]
- Drosophila melanogaster [61]
- Gallus gallus [61]
- Torpedo marmorata [46]
- Enterobacteria phage t4 [44]
- Arabidopsis thaliana [42]
- Human immunodeficiency virus [41]
- Mycobacterium tuberculosis [39]
- Bacillus subtilis [38]
- Euglena gracilis [37]
- Cricetulus griseus [36]
- Escherichia virus t7 [36]
- Thermus thermophilus [36]
- Influenza a virus [35]
- Trichomonas vaginalis [35]
- Staphylococcus phage 812 [34]
- Danio rerio [34]
- Lama glama [34]
- Salmonella enterica [33]
- Enterovirus c [32]
- Macaca mulatta [31]
- Staphylococcus aureus [30]
- Vicugna pacos [30]
- Rous sarcoma virus [29]
- Enterovirus d [29]
- Escherichia coli [29]
- Klebsiella pneumoniae [28]
- Mycobacterium tuberculosis [27]
- Caenorhabditis elegans [27]
- Human herpesvirus 1 [26]
- Hepatitis b virus [26]
- Pseudomonas phage phi6 [26]
- Candidatus arthromitus sp. sfb-mouse-nl [26]
- Pseudomonas phage jbd30 [24]
- Mycolicibacterium smegmatis [23]
- Myxococcus xanthus [23]
- Spinacia oleracea [23]
- Escherichia coli [23]
- Salmonella phage p22 [22]
- Mycolicibacterium smegmatis [22]
- Halothiobacillus neapolitanus [22]
- Tobacco mosaic virus [21]
- Saccharomyces cerevisiae [21]
- Sus scrofa [21]
- Human mastadenovirus c [20]
- Plasmodium falciparum [20]
- Bacillus phage spp1 [19]
- Rice dwarf virus [19]
- Chaetomium thermophilum [19]
- Pyrococcus furiosus [19]
- Chikungunya virus [19]
- Enterovirus a [19]
- Chaetomium thermophilum [19]
- Vaccinia virus [18]
- Campylobacter jejuni [18]
- Pseudomonas aeruginosa [18]
- Bacillus subtilis [17]
- Vibrio cholerae [17]
- Avian infectious bursal disease virus [16]
- Pseudomonas aeruginosa [16]
- Thermoplasma acidophilum [16]
- Trypanosoma brucei [16]
- Shigella flexneri [16]
- Latrodectus tredecimguttatus [16]
- Mycolicibacterium thermoresistibile [15]
- Primate t-lymphotropic virus 1 [15]
- Staphylococcus phage p68 [15]
- Human herpesvirus 8 [15]
- (no species) [14]
- (no species) [14]
- Candidatus arthromitus sp. sfb-rat-yit [14]
- Human mastadenovirus d [14]
- Nudaurelia capensis omega virus [14]
- Caulobacter vibrioides [14]
- Schizosaccharomyces pombe [14]
- Thermomyces lanuginosus [14]
- Human herpesvirus 1 [13]
- Unidentified adenovirus [13]
- Cypovirus 1 [13]
- Rhinovirus b [13]
- Taura syndrome virus [13]
- Eastern chimpanzee simian foamy virus [13]
EM Method
- Single-particle [7091]
- Tomography [1691]
- Subtomogram averaging [805]
- Helical reconstruction [590]
- Electron Crystallography [22]
Resolution
- < 2Å [84]
- ≥ 2Å and < 3Å [1191]
- ≥ 3Å and < 4Å [2499]
- ≥ 4Å and < 5Å [790]
- ≥ 5Å and < 6Å [193]
- ≥ 6Å and < 8Å [567]
- ≥ 8Å and < 12Å [801]
- ≥ 12Å and < 16Å [732]
- ≥ 16Å and < 20Å [460]
- ≥ 20Å and < 30Å [1009]
- ≥ 30Å [1149]
Model molecular weight
- 0-50 kDa [110]
- 50-100 kDa [257]
- 100-250 kDa [1094]
- 250-500 kDa [1042]
- 500-1000 kDa [611]
- 1-2 MDa [346]
- 2-5 MDa [320]
- 5-10 MDa [180]
- > 10 MDa [162]
Release Date
- 2025 [1471]
- 2024 [1225]
- 2023 [972]
- 2022 [764]
- 2021 [640]
- 2020 [634]
- 2019 [593]
- 2018 [633]
- 2017 [308]
- 2016 [444]
- 2015 [412]
- 2014 [403]
- 2013 [414]
- 2012 [339]
- 2011 [204]
- 2010 [178]
- 2009 [170]
- 2008 [43]
- 2007 [118]
- 2006 [111]
- 2005 [43]
- 2004 [30]
- 2003 [42]
- 2002 [8]
Author by name
- Liu J [985]
- Ren G [951]
- Zhang M [537]
- Wu H [372]
- Wang S [363]
- Hu Z [348]
- Gang O [337]
- Ward AB [268]
- Lei D [267]
- Potter CS [245]
- Carragher B [244]
- Chiu W [224]
- Zhang X [199]
- Mcrae EKS [195]
- Zhou L [191]
- Andersen ES [189]
- Geary C [186]
- Kishikawa J [174]
- Plevka P [161]
- Zhou ZH [151]
- Kato T [146]
- Kishikawa JI [145]
- Nogales E [140]
- Rudenko G [136]
- Fuzik T [132]
- Huang C [132]
- Castro C [131]
- Castro CE [131]
- Huang CM [131]
- Liu JF [131]
- Marras A [131]
- Marras AE [131]
- Mitsuoka K [131]
- Rubinstein JL [131]
- Su H [131]
- Su HJ [131]
- White MA [131]
- Misra A [130]
- Reddy S [130]
- Lyumkis D [129]
- Baumeister W [128]
- Briggs JAG [127]
- Zhang Y [126]
- Lander GC [125]
- Kotecha A [124]
- Yokoyama K [123]
- Rossmann MG [121]
- Liu Y [120]
- Antanasijevic A [116]
- Reddy MVVVS [115]
- Moore JP [113]
- Nakano A [112]
- Sanders RW [112]
- Baker D [111]
- Grigorieff N [111]
- Copps J [110]
- Greber BJ [110]
- Liu H [110]
- Montefiori DC [108]
- Wang Y [105]
- Frank J [103]
- Li S [103]
- Wang L [101]
- Wilson IA [101]
- Burton DR [98]
- Novacek J [97]
- Saibil HR [97]
- Plitzko JM [90]
- Sewall LM [89]
- Guo H [85]
- Liu X [85]
- Tan YZ [85]
- De La Pena At [85]
- Namba K [84]
- Orlova EV [84]
- King NP [82]
- Medalia O [82]
- Huiskonen JT [81]
- Wang J [81]
- Caston JR [80]
- Engel BD [80]
- Lei M [80]
- Ludtke SJ [80]
- Marino JP [80]
- Zhang K [80]
- Beckmann R [78]
- Kwong PD [78]
- Schur FKM [77]
- Veesler D [76]
- Feng J [75]
- Wang Q [74]
- Acharya P [73]
- Chen S [73]
- Graham BS [72]
- Jiang W [72]
- Mielke T [72]
- Schmid MF [72]
- Raunser S [71]
- Cushing VI [70]
- Campbell MG [69]
Author by ORCID
- Ren G [915]
- Liu J [808]
- Chiu W [195]
- Andersen ES [188]
- Geary C [186]
- Zhang M [174]
- Plevka P [157]
- Kishikawa JI [145]
- Zhou L [131]
- Castro CE [131]
- Ward AB [131]
- Marras AE [131]
- Su HJ [131]
- Fuzik T [129]
- Kotecha A [119]
- Carragher B [115]
- White MA [112]
- Greber BJ [108]
- Rubinstein JL [108]
- Grigorieff N [101]
- Baker D [100]
- Briggs JAG [99]
- Yokoyama K [98]
- Kato T [96]
- Copps J [95]
- Lander GC [87]
- Tan YZ [85]
- Orlova EV [84]
- Lei M [80]
- King NP [80]
- Plitzko JM [80]
- Novacek J [80]
- Huiskonen JT [78]
- Ludtke SJ [75]
- Kwong PD [74]
- Caston JR [72]
- Engel BD [70]
- Cushing VI [70]
- Crispin M [69]
- Campbell MG [69]
- Raunser S [68]
- Medalia O [67]
- Chang YW [66]
- Ali S [65]
- Torres JL [65]
- Guo H [64]
- Schur FKM [64]
- Jiang W [63]
- Schmid MF [63]
- Koh AF [62]
- Butcher SJ [62]
- Allen JD [62]
- Barbazanges M [61]
- Barrett AGM [61]
- Jurgaityte K [61]
- Nakanishi A [60]
- Luque D [60]
- Schoehn G [58]
- Bottcher B [58]
- Hrebik D [58]
- Stuart DI [57]
- Cheng Y [55]
- Zhang X [55]
- Zhou ZH [55]
- Williamson JR [55]
- Armache JP [54]
- Zhou L [54]
- Borgnia MJ [52]
- Hillen HS [52]
- Cottrell CA [52]
- Pantucek R [52]
- Park E [51]
- Edwards RJ [51]
- Mahamid J [50]
- Paulino C [50]
- Noble AJ [49]
- Frost A [49]
- Gao N [48]
- Venugopal H [47]
- Baumeister W [47]
- Antanasijevic A [46]
- Labranche C [46]
- Bangaru S [45]
- Boehringer D [45]
- Lee SY [44]
- Conway JF [43]
- Pehau-arnaudet G [42]
- Gazi A [42]
- Clare DK [42]
- Chipman PR [42]
- Llorca O [41]
- Ayme G [41]
- Grunewald K [41]
- Hu Y [41]
- Lafaye P [41]
- Bui KH [41]
- Namba K [41]
- Villa E [41]
- Graham BS [40]
- Sartori-rupp A [40]
Journal
- NAT COMMUN [1759]
- TO BE PUBLISHED [950]
- PNAS [939]
- NATURE [614]
- BIORXIV [514]
- NAT STRUCT MOL BIOL [511]
- CELL [442]
- ELIFE [438]
- SCIENCE [392]
- STRUCTURE [390]
- J MOL BIOL [356]
- J VIROL [266]
- MOL CELL [240]
- SCI ADV [207]
- EMBO J [194]
- SCI REP [153]
- J BIOL CHEM [141]
- J STRUCT BIOL [141]
- CELL REP [127]
- NUCLEIC ACIDS RES [120]
- PLOS PATHOG [103]
- COMMUN BIOL [102]
- ACTA CRYSTALLOGR D STRUCT BIOL [91]
- J CELL BIOL [82]
- NAT METHODS [78]
- NAT CHEM BIOL [64]
- PLOS BIOL [56]
- FRONT ENDOCRINOL [51]
- NAT MICROBIOL [51]
- PROTEIN SCI [41]
- IMMUNITY [36]
- PNAS NEXUS [36]
- PLOS ONE [34]
- VIROLOGY [34]
- BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
- IUCRJ [31]
- EMBO REP [30]
- MOL BIOL CELL [29]
- DEV CELL [28]
- CELL HOST MICROBE [27]
- CELL RES [27]
- INT J MOL SCI [25]
- NAT PLANTS [22]
- ACS NANO [21]
- J.MOL.CELL.CARDIOL. [20]
- J BACTERIOL [19]
- J CELL SCI [19]
- J STRUCT BIOL X [19]
- MBIO [19]
- NAT NANOTECHNOL [19]
- NPJ VACCINES [19]
- SCI TRANSL MED [19]
- FEBS LETT [18]
- MOL MICROBIOL [18]
- BIOCHEMISTRY [16]
- J AM CHEM SOC [16]
- NAT CATAL [16]
- NAT CELL BIOL [15]
- J MED CHEM [14]
- NAT NEUROSCI [14]
- BIOCHEM J [12]
- J LIPID RES [12]
- PROTEIN CELL [12]
- ADV SCI [11]
- ANGEW CHEM INT ED ENGL [11]
- BLOOD [11]
- NEURON [11]
- OPEN BIOL [11]
- VIRUSES [11]
- GENES DEV [10]
- RES SQ [10]
- RNA [10]
- MICROSC MICROANAL [9]
- BIOMOLECULES [8]
- CURR RES STRUCT BIOL [8]
- ISME J [8]
- LIFE SCI ALLIANCE [8]
- MICROLIFE [8]
- NANOSCALE [8]
- PHILOS TRANS R SOC LOND, B, BIOL SCI [8]
- ULTRAMICROSCOPY [8]
- ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [7]
- FRONT MICROBIOL [7]
- PROG BIOPHYS MOL BIOL [7]
- ACS CATAL [6]
- BIOCHIM BIOPHYS ACTA [6]
- BIOPHYS J [6]
- CELL DISCOV [6]
- CELL MICROBIOL [6]
- CURR BIOL [6]
- GENOME BIOL EVOL [6]
- INT J BIOL MACROMOL [6]
- J GEN VIROL [6]
- MOLECULES [6]
- CELL CYCLE [5]
- COMMUN CHEM [5]
- FEBS OPEN BIO [5]
- ISCIENCE [5]
- METHODS [5]
- MICROBIOL IMMUNOL [5]
Software
- RELION [3212]
- CRYOSPARC [2276]
- IMOD [728]
- CTFFIND [637]
- GCTF [579]
- TOMOCTF [512]
- SPIDER [447]
- IPET [418]
- CHIMERA [322]
- EMAN [223]
- FREALIGN [183]
- EMAN2 [147]
- WARP [134]
- DYNAMO [122]
- IMAGIC [121]
- XMIPP [121]
- CISTEM [115]
- MATLAB [73]
- AUTO3DEM [63]
- JSPR [59]
- PEET [58]
- TOMO3D [55]
- ETOMO [54]
- UCSF CHIMERA [51]
- CTFPHASEFLIP [47]
- EMAN2, SPARX [47]
- IMAGIC, SPIDER [42]
- SITUS [42]
- URO [40]
- SPIDER, APPION [39]
- CRYOLO [38]
- NOVACTF [38]
- COOT [37]
- MDFF [36]
- SPARX [35]
- BSOFT [33]
- APPION, SPIDER [32]
- TOM [32]
- UCSF CHIMERAX [32]
- AV3 [29]
- MRC [29]
- PROTOMO [28]
- APPION [27]
- STOPGAP [26]
- EM3DR2 [25]
- EMAN1 [25]
- EMCLARITY [25]
- IHRSR [25]
- IMIRS [25]
- PYTOM [25]
- CHIMERA, SITUS [23]
- PRIISM/IVE [22]
- EMFIT [21]
- J3DR [21]
- SPHIRE [21]
- TOM TOOLBOX [21]
- IMOD, BSOFT, SPIDER, TOM, PACKAGE, MATLAB [20]
- O [20]
- CTFTILT [19]
- JALIGN [19]
- SPRING [19]
- EMAN1, EMAN2 [18]
- IMOD, TOMO3D, PEET [18]
- MPSA [18]
- PHENIX [18]
- APPION, SPIDER, SPARX, EMAN2 [17]
- CHIMERA, MDFF [17]
- SUBTOM [17]
- CTFFIND3 [16]
- IMAGIC, CUSTOM, SPIDER [16]
- MULTI-PATH SA [16]
- SPIDER, IMAGIC [16]
- UNBLUR, CTFFIND4, FREALIGN [16]
- APPION, SPIDER, EMAN [15]
- SPIDER, EMAN [15]
- IPET, FETR, SPIDER, IMOD, EMAN, AND, EMAN2 [14]
- SPIDER, FREALIGN [14]
- CTFFIND4 [13]
- DIREX [13]
- FREALIX [13]
- IMAGIC-5 [13]
- IMAGIC-5, SPIDER [13]
- IMOD, RAPTOR, PROTOMO [13]
- PHOELIX, SUPRIM [13]
- EMAN, SPIDER [12]
- IMOD, DYNAMO [12]
- SCIPION [12]
- EMAN2, SPIDER, XMIPP [11]
- GAP [11]
- JSPR, EMAN2, EMAN [11]
- SIGNATURE, CTFFIND3, SPIDER, SPARX [11]
- SPIDER PACKAGE [11]
- SPIDER XMIPP [11]
- SPIDER, IHRSR [11]
- EMAN, XMIPP [10]
- IMOD, BSOFT [10]
- SPARX/EMAN2 [10]
- CHIMERA, COOT [9]
- EMAN1, FREALIGN [9]
- EMAN2, IMAGIC, FREALIGN, RSAMPLE, CTFFIND3 [9]
Microscope
- FEI TITAN KRIOS [4757]
- TFS KRIOS [1127]
- FEI TECNAI F20 [916]
- ZEISS LIBRA120PLUS [455]
- FEI POLARA 300 [451]
- FEI TALOS ARCTICA [381]
- TFS GLACIOS [210]
- FEI/PHILIPS CM200FEG [202]
- FEI TECNAI 20 [164]
- FEI TECNAI 12 [156]
- FEI TECNAI F30 [147]
- FEI TECNAI SPIRIT [135]
- JEOL 2200FS [109]
- FEI TITAN [105]
- JEOL CRYO ARM 300 [105]
- JEOL 3200FSC [86]
- FEI/PHILIPS CM300FEG/T [84]
- JEOL 2010F [77]
- FEI/PHILIPS EM420 [46]
- FEI TECNAI ARCTICA [42]
- TFS TALOS [40]
- JEOL 2100 [37]
- FEI/PHILIPS CM120T [35]
- JEOL 2100F [33]
- JEOL 1230 [30]
- FEI/PHILIPS CM200T [24]
- FEI/PHILIPS CM200FEG/ST [21]
- JEOL 1200EXII [21]
- JEOL 3100FFC [17]
- JEOL 4000 [17]
- OTHER [17]
- JEOL 4000EX [16]
- JEOL 1400 [15]
- JEOL 2200FSC [15]
- JEOL 3000SFF [15]
- JEOL 3200FS [14]
- JEOL 1200EX [12]
- TFS TALOS F200C [9]
- FEI/PHILIPS CM200FEG/UT [8]
- JEOL CRYO ARM 200 [8]
- FEI/PHILIPS CM300FEG/ST [7]
- JEOL 2000EX [6]
- JEOL KYOTO-3000SFF [6]
- FEI/PHILIPS CM12 [5]
- HITACHI H3000 UHVEM [4]
- JEOL 2010 [4]
- JEOL 1010 [3]
- FEI TECNAI 10 [2]
- FEI/PHILIPS CM300FEG/HE [2]
- FEI/PHILIPS EM400 [2]
- JEOL 100CX [2]
- JEOL 1200 [2]
- JEOL 2010HT [2]
- JEOL 2010UHR [2]
- TFS TALOS L120C [2]
- FEI/PHILIPS CM200FEG/SOPHIE [1]
- HITACHI EF2000 [1]
- HITACHI H-9500SD [1]
- HITACHI H7600 [1]
- JEOL 2000EXII [1]
- JEOL 2010HC [1]
- JEOL 2011 [1]
- JEOL 3100FEF [1]
- TFS TITAN THEMIS [1]
- ZEISS LEO912 [1]
Electron Source
- FIELD EMISSION GUN [9084]
- LAB6 [959]
- TUNGSTEN HAIRPIN [129]
- OTHER [28]
Film or detector model
- GATAN K2 SUMMIT 4K X 4K [1849]
- GATAN K3 BIOQUANTUM 6K X 4K [1717]
- GATAN K3 6K X 4K [1069]
- GATAN ULTRASCAN 4000 4K X 4K [935]
- KODAK SO-163 FILM [907]
- FEI FALCON IV 4K X 4K [568]
- FEI FALCON III 4K X 4K [485]
- FEI FALCON II 4K X 4K [442]
- GATAN K2 QUANTUM 4K X 4K [337]
- TVIPS TEMCAM-F416 4K X 4K [305]
- TFS FALCON 4I 4K X 4K [215]
- GATAN K2 4K X 4K [133]
- OTHER [131]
- FEI EAGLE 4K X 4K [124]
- TVIPS TEMCAM-F415 4K X 4K [99]
- GENERIC GATAN 4K X 4K [83]
- GENERIC CCD [76]
- GATAN ULTRASCAN 1000 2K X 2K [71]
- GENERIC TVIPS 4K X 4K [71]
- DIRECT ELECTRON DE-20 5K X 3K [49]
- GENERIC GATAN [42]
- GATAN K2 BASE 4K X 4K [36]
- GATAN K3 BIOCONTINUUM 6K X 4K [35]
- TVIPS TEMCAM-F816 8K X 8K [34]
- FEI FALCON I 4K X 4K [30]
- TVIPS TEMCAM-F224 2K X 2K [30]
- GATAN MULTISCAN [26]
- FEI EAGLE 2K X 2K [24]
- DIRECT ELECTRON DE-12 4K X 3K [19]
- FEI CETA 4K X 4K [17]
- TVIPS TEMCAM-F216 2K X 2K [16]
- GENERIC GATAN 2K X 2K [15]
- GENERIC CCD 2K X 2K [11]
- GENERIC TVIPS [10]
- KODAK 4489 FILM [9]
- DIRECT ELECTRON DE-16 4K X 4K [7]
- GENERIC FILM [7]
- AGFA SCIENTA FILM [6]
- DECTRIS ELA 1K X 0.5K [6]
- DIRECT ELECTRON APOLLO 4K X 4K [6]
- DIRECT ELECTRON DE-64 8K X 8K [6]
- GATAN ORIUS SC200 2K X 2K [6]
- GATAN ULTRASCAN 10000 10K X 10K [5]
- DECTRIS ARINA 0.2K X 0.2K [4]
- DIRECT ELECTRON DE-10 5K X 4K [3]
- GENERIC IMAGE PLATES [3]
- GENERIC TVIPS 2K X 2K [3]
- GATAN ALPINE 2.3K X 3.2K [2]
- GATAN K2 IS 4K X 4K [2]
- GATAN ORIUS SC1000 4K X 2.7K [2]
- SIA 15C 3K X 3K [2]
- PROSCAN TEM-PIV 2K X 2K [1]
External links
- UniProt [4446]
- PDB [4147]
- PDBe-Kb [4079]
- AlphaFold DB [3577]
- Pfam [2855]
- InterPro [2829]
- Gene Ontology [2812]
- ChEBI [2113]
- ChEMBL [1895]
- DrugBank [1777]
- Complex Portal [1182]
- EMPIAR [840]
- CATH [103]
- SCOP2 [100]
