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image_reconstruction_algorithm:FOURIE*

Filter By

Current Database

  • EMDB [4666]

Current status

  • REL [4666]

Sample type

  • Complex [3890]
  • Protein [3115]
  • Ligand [1738]
  • RNA [513]
  • Cellular component [394]
  • Virus [387]
  • DNA [254]
  • Cell [34]
  • Other [27]
  • Tissue [12]

Organism

  • Homo sapiens [1321]
  • Synthetic construct [499]
  • Mus musculus [239]
  • Escherichia coli [220]
  • Bos taurus [205]
  • Saccharomyces cerevisiae [157]
  • Severe acute respiratory syndrome coronavirus [144]
  • Enterobacteria phage m13 [130]
  • Rattus norvegicus [97]
  • Thermus thermophilus [88]
  • Oryctolagus cuniculus [87]
  • Escherichia coli [70]
  • Sus scrofa [63]
  • Bacillus sp. (strain ps3) [55]
  • Saccharomyces cerevisiae [48]
  • Xenopus laevis [42]
  • Torpedo marmorata [38]
  • Euglena gracilis [36]
  • Trichomonas vaginalis [35]
  • Mycobacterium tuberculosis [35]
  • Tetrahymena thermophila [34]
  • Gallus gallus [33]
  • Staphylococcus phage 812 [30]
  • Enterovirus d [30]
  • Lama glama [29]
  • Human immunodeficiency virus 1 [28]
  • Chlamydomonas reinhardtii [28]
  • Arabidopsis thaliana [27]
  • Vicugna pacos [25]
  • Pseudomonas phage jbd30 [24]
  • Aquifex aeolicus [24]
  • Influenza a virus [22]
  • Saccharomyces cerevisiae [22]
  • Halothiobacillus neapolitanus [22]
  • Escherichia coli [19]
  • Mycolicibacterium smegmatis [18]
  • Vibrio cholerae [17]
  • Azotobacter vinelandii [17]
  • Mycobacterium tuberculosis [16]
  • Pseudoalteromonas sp. s983 [16]
  • Latrodectus tredecimguttatus [16]
  • Vaccinia virus [15]
  • Spinacia oleracea [15]
  • Klebsiella pneumoniae [15]
  • Streptococcus thermophilus [14]
  • Human immunodeficiency virus [14]
  • Salmonella enterica [14]
  • Dengue virus [13]
  • Drosophila melanogaster [13]
  • Pseudomonas phage phi6 [12]
  • Bacillus subtilis [12]
  • Neovison vison [12]
  • Haliangium ochraceum [12]
  • Trypanosoma brucei [12]
  • Hepatitis b virus [11]
  • Enterobacteria phage t4 [11]
  • Caulobacter vibrioides [11]
  • Eastern chimpanzee simian foamy virus [11]
  • Haliangium ochraceum [11]
  • Unidentified adenovirus [10]
  • Streptomyces phage phic31 [10]
  • Orthoflavivirus encephalitidis [10]
  • Geobacillus stearothermophilus [10]
  • Halothiobacillus neapolitanus [10]
  • Danio rerio [10]
  • (no species) [10]
  • Human herpesvirus 1 [9]
  • Avian infectious bursal disease virus [9]
  • Deltainfluenzavirus influenzae [9]
  • Staphylococcus epidermidis [9]
  • Mesorhizobium japonicum [9]
  • Pseudomonas aeruginosa [9]
  • Severe acute respiratory syndrome coronavirus [9]
  • Thermus virus p74-26 [9]
  • Clostridioides difficile [8]
  • Brevibacterium linens [8]
  • Escherichia coli [8]
  • Shewanella oneidensis [8]
  • Cricetulus griseus [7]
  • Streptococcus thermophilus [7]
  • Fako virus [7]
  • Pseudomonas phage 201phi2-1 [7]
  • Pseudomonas aeruginosa [7]
  • Enterobacteria phage t4 [7]
  • Human herpesvirus 8 [7]
  • Chrysotila roscoffensis [7]
  • Nitrosopumilus maritimus [7]
  • Escherichia coli [7]
  • Trypanosoma brucei [7]
  • Caenorhabditis elegans [7]
  • Aggregatibacter actinomycetemcomitans [7]
  • Escherichia virus t7 [6]
  • Semliki forest virus [6]
  • Machupo virus [6]
  • Staphylococcus aureus [6]
  • Staphylococcus epidermidis [6]
  • Methanothermobacter marburgensis [6]
  • Vigna radiata [6]
  • Orthobornavirus bornaense [6]
  • Chaetomium thermophilum [6]

EM Method

  • Single-particle [3649]
  • Tomography [572]
  • Helical reconstruction [262]
  • Subtomogram averaging [175]
  • Electron Crystallography [8]

Resolution

  • < 2Å [88]
  • ≥ 2Å and < 3Å [1054]
  • ≥ 3Å and < 4Å [1786]
  • ≥ 4Å and < 5Å [472]
  • ≥ 5Å and < 6Å [105]
  • ≥ 6Å and < 8Å [192]
  • ≥ 8Å and < 12Å [183]
  • ≥ 12Å and < 16Å [250]
  • ≥ 16Å and < 20Å [67]
  • ≥ 20Å and < 30Å [244]
  • ≥ 30Å [223]

Model molecular weight

  • 0-50 kDa [68]
  • 50-100 kDa [181]
  • 100-250 kDa [758]
  • 250-500 kDa [684]
  • 500-1000 kDa [319]
  • 1-2 MDa [206]
  • 2-5 MDa [137]
  • 5-10 MDa [99]
  • > 10 MDa [58]

Release Date

  • 2026 [460]
  • 2025 [720]
  • 2024 [764]
  • 2023 [683]
  • 2022 [413]
  • 2021 [310]
  • 2020 [249]
  • 2019 [339]
  • 2018 [466]
  • 2017 [128]
  • 2016 [134]

Author by name

  • Ren G [569]
  • Liu J [563]
  • Lei D [251]
  • Mcrae EKS [193]
  • Andersen ES [188]
  • Zhou L [188]
  • Geary C [187]
  • Kishikawa J [179]
  • Zhang M [177]
  • Kishikawa JI [148]
  • Mitsuoka K [146]
  • Yokoyama K [143]
  • Kato T [133]
  • Nakano A [133]
  • Castro C [131]
  • Castro CE [131]
  • Huang C [131]
  • Huang CM [131]
  • Marras A [131]
  • Marras AE [131]
  • Su H [131]
  • Su HJ [131]
  • Liu JF [130]
  • Misra A [130]
  • Reddy S [130]
  • Rudenko G [130]
  • White MA [130]
  • Reddy MVVVS [111]
  • Greber BJ [101]
  • Plevka P [101]
  • Novacek J [93]
  • Liu Y [91]
  • Liu H [88]
  • Li Y [87]
  • Fuzik T [84]
  • Kotecha A [83]
  • Lei M [80]
  • Marino JP [80]
  • Wang L [74]
  • Cushing VI [72]
  • Feng J [72]
  • Zhang X [70]
  • Zhang Y [68]
  • Namba K [67]
  • Ali S [65]
  • Koh AF [64]
  • Cook BD [63]
  • Nakanishi A [63]
  • Narehood SM [63]
  • Herzik MA [62]
  • Bahl AK [61]
  • Barbazanges M [61]
  • Barrett AGM [61]
  • Bondke A [61]
  • Jurgaityte K [61]
  • Kroll SHB [61]
  • Scheiper B [61]
  • Wang J [59]
  • Li S [57]
  • Zhou ZH [57]
  • Lander GC [54]
  • Chiu W [53]
  • Wang Y [53]
  • Hillen HS [51]
  • Park E [50]
  • Yu Y [50]
  • Borgnia MJ [49]
  • Hu Y [48]
  • Shi Y [48]
  • Zhang Z [48]
  • Grotjahn DA [47]
  • Huiskonen JT [46]
  • Wang X [46]
  • Koziej L [45]
  • Larsson DSD [45]
  • Lee SY [45]
  • Selmer M [45]
  • Suo Y [45]
  • Suzuki T [45]
  • Bottcher B [44]
  • Fedor JG [44]
  • Lyumkis D [44]
  • Wu M [44]
  • Aibara S [43]
  • Chen M [43]
  • Frost A [43]
  • Lee S-Y [43]
  • Rossmann MG [43]
  • Itskanov S [42]
  • Ji D [42]
  • Han F [41]
  • He Z [41]
  • Nogales E [41]
  • Tian H [41]
  • Bachochin MJ [40]
  • Dukakis P [40]
  • Enos SE [40]
  • Kuschnerus IC [40]
  • Rahmani H [40]
  • Redford HT [40]

Author by ORCID

  • Ren G [511]
  • Liu J [431]
  • Andersen ES [188]
  • Zhang M [173]
  • Geary C [171]
  • Kishikawa JI [142]
  • Lei D [132]
  • Zhou L [131]
  • Castro CE [131]
  • Marras AE [131]
  • Su HJ [131]
  • White MA [111]
  • Yokoyama K [101]
  • Kato T [90]
  • Lei M [80]
  • Plevka P [75]
  • Greber BJ [65]
  • Narehood SM [63]
  • Kotecha A [61]
  • Fuzik T [59]
  • Cook BD [58]
  • Novacek J [58]
  • Li Y [58]
  • Nakanishi A [55]
  • Cushing VI [54]
  • Hillen HS [51]
  • Zhou L [51]
  • Chiu W [50]
  • Lander GC [48]
  • Ali S [45]
  • Namba K [45]
  • Koh AF [44]
  • Zhou ZH [44]
  • Barbazanges M [43]
  • Barrett AGM [43]
  • Jurgaityte K [43]
  • Lee SY [42]
  • Frost A [42]
  • Ji D [42]
  • Grotjahn DA [41]
  • Borgnia MJ [41]
  • Huiskonen JT [41]
  • Hu Y [41]
  • Wu M [41]
  • Itskanov S [41]
  • Park E [41]
  • Herzik MA [40]
  • Enos SE [40]
  • Bachochin MJ [40]
  • Kuschnerus IC [40]
  • Rahmani H [40]
  • Redford TH [40]
  • Dukakis P [40]
  • Rehling P [39]
  • Finke AF [39]
  • Richter-dennerlein R [39]
  • Boshnakovska A [39]
  • Suo Y [38]
  • Johnson PJ [35]
  • Im W [32]
  • Sazanov LA [32]
  • Mistuoka K [32]
  • Kishikawa J [32]
  • Fujita J [31]
  • Venugopal H [30]
  • Laughlin TG [30]
  • Anraku Y [30]
  • Siborova M [30]
  • Caston JR [30]
  • Pantucek R [29]
  • Mitsuoka K [29]
  • Koziej L [29]
  • Hirose M [28]
  • Peng R [28]
  • Sharma K [28]
  • Wright NJ [28]
  • Bottcher B [28]
  • Van Kuppeveld Fjm [27]
  • Ni T [27]
  • Wang Y [27]
  • Miyazaki N [27]
  • Zhang P [27]
  • Grigorieff N [26]
  • Moss 3Rd Fr [26]
  • Liu LN [26]
  • Hite RK [26]
  • Shigematsu H [26]
  • Kita S [26]
  • Nakagawa T [25]
  • Bowie D [25]
  • Nogales E [25]
  • Tucker M [25]
  • Wang XT [25]
  • Miguez-cabello FJ [25]
  • Gerle C [25]
  • Liu Y [25]
  • Des Georges A [25]
  • Lincoff J [25]
  • Grabe M [25]
  • Azuma Y [25]

Journal

  • NAT COMMUN [1213]
  • TO BE PUBLISHED [379]
  • BIORXIV [366]
  • PNAS [296]
  • NATURE [278]
  • NAT STRUCT MOL BIOL [249]
  • CELL [180]
  • ELIFE [158]
  • J MOL BIOL [158]
  • MOL CELL [153]
  • SCI ADV [135]
  • SCIENCE [125]
  • SCI REP [111]
  • STRUCTURE [87]
  • COMMUN BIOL [80]
  • NUCLEIC ACIDS RES [77]
  • NAT CHEM BIOL [58]
  • ACTA CRYSTALLOGR D STRUCT BIOL [53]
  • EMBO J [48]
  • CELL REP [47]
  • J VIROL [41]
  • J BIOL CHEM [33]
  • PROTEIN SCI [33]
  • BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
  • PNAS NEXUS [30]
  • NAT METHODS [28]
  • NAT MICROBIOL [27]
  • J STRUCT BIOL [26]
  • IUCRJ [25]
  • IMMUNITY [21]
  • NAT NANOTECHNOL [19]
  • ACS NANO [18]
  • CELL HOST MICROBE [18]
  • NAT PLANTS [18]
  • CELL RES [17]
  • NAT NEUROSCI [14]
  • PLOS PATHOG [14]
  • J MED CHEM [13]
  • SCI TRANSL MED [13]
  • J CELL BIOL [12]
  • ADV SCI [11]
  • EMBO REP [11]
  • J AM CHEM SOC [11]
  • PLOS BIOL [10]
  • J BACTERIOL [9]
  • LIFE SCI ALLIANCE [8]
  • NAT CATAL [8]
  • RES SQ [8]
  • VIRUSES [8]
  • BIOMOLECULES [7]
  • FEBS LETT [7]
  • BIOCHEMISTRY [6]
  • BIOCHIM BIOPHYS ACTA BIOENERG [6]
  • PROG BIOPHYS MOL BIOL [6]
  • HEMASPHERE [5]
  • INT J BIOL MACROMOL [5]
  • MBIO [5]
  • MICROBIOL IMMUNOL [5]
  • ULTRAMICROSCOPY [5]
  • ANGEW CHEM INT ED ENGL [4]
  • BIOCHEM BIOPHYS RES COMMUN [4]
  • CELL DISCOV [4]
  • DEV CELL [4]
  • FEBS OPEN BIO [4]
  • FRONT PLANT SCI [4]
  • INT J MOL SCI [4]
  • OPEN BIOL [4]
  • ACS CATAL [3]
  • BIOPHYS J [3]
  • CURR RES STRUCT BIOL [3]
  • ELECTROCHIM ACTA [3]
  • FEBS J [3]
  • ISCIENCE [3]
  • J STRUCT BIOL X [3]
  • J.BIOCHEM. [3]
  • MOL THER ADV [3]
  • NEURON [3]
  • NPJ VACCINES [3]
  • VIROLOGY [3]
  • ACS CHEM BIOL [2]
  • APPL ENVIRON MICROBIOL [2]
  • CHEM COMMUN [2]
  • CHEM COMMUN (CAMB) [2]
  • CHEM MED CHEM [2]
  • COMMUN CHEM [2]
  • FRONT MOL BIOSCI [2]
  • J ENZYME INHIB MED CHEM [2]
  • J GEN PHYSIOL [2]
  • J.MUSCLE RES.CELL.MOTIL. [2]
  • MACROMOL RAPID COMMUN [2]
  • MICROB BIOTECHNOL [2]
  • MICROBIOL SPECTR [2]
  • MICROSC MICROANAL [2]
  • MOL BIOL CELL [2]
  • MOL MICROBIOL [2]
  • NAT CELL BIOL [2]
  • PLANT COMMUN. [2]
  • SCI IMMUNOL [2]
  • ACS MED.CHEM.LETT. [1]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]

Software

  • RELION [2079]
  • CRYOSPARC [1928]
  • CTFFIND [418]
  • GCTF [192]
  • TOMOCTF [156]
  • IMOD [154]
  • FREALIGN [111]
  • WARP [99]
  • CISTEM [90]
  • IPET [69]
  • JSPR [52]
  • EMAN2 [46]
  • EMAN [43]
  • COOT [41]
  • UCSF CHIMERAX [33]
  • CRYOLO [32]
  • DYNAMO [28]
  • APPION [26]
  • XMIPP [24]
  • CTFTILT [19]
  • J3DR [18]
  • PHENIX [18]
  • JALIGN [16]
  • SPHIRE [16]
  • SCIPION [14]
  • SPIDER [13]
  • PYTOM [12]
  • UCSF CHIMERA [12]
  • EMCLARITY [11]
  • BSOFT [10]
  • CTFFIND4 [9]
  • FOCUS [9]
  • ISOLDE [9]
  • CTFFIND3 [8]
  • SIMPLE [8]
  • STOPGAP [8]
  • EMIRA [7]
  • IMAGIC [7]
  • MATLAB [7]
  • ARETOMO [6]
  • NOVACTF [6]
  • AIMLESS [5]
  • EMREADY [5]
  • AUTO3DEM [4]
  • FREALIX [4]
  • MPSA [4]
  • IMIRS [3]
  • PEET [3]
  • SPARX [3]
  • SPRING [3]
  • EMAN BOXER [2]
  • GCTF/RELION [2]
  • MOTIONCORR2 [2]
  • TOM TOOLBOX [2]
  • TOMOALIGN [2]
  • ACE [1]
  • CCP4 PACKAGE [1]
  • COW [1]
  • DIALS [1]
  • E2HELIXBOXER.PY [1]
  • ELITE3D [1]
  • EMAN, JSPR [1]
  • FITCTF2.PY [1]
  • ICON [1]
  • PHASER [1]
  • RELION2 [1]
  • RSREF [1]
  • SEGREFINETHREED [1]
  • SERIALEM [1]

Microscope

  • FEI TITAN KRIOS [2404]
  • TFS KRIOS [1060]
  • ZEISS LIBRA120PLUS [350]
  • FEI TALOS ARCTICA [213]
  • TFS GLACIOS [177]
  • JEOL CRYO ARM 300 [108]
  • FEI POLARA 300 [82]
  • FEI TITAN [66]
  • FEI TECNAI F20 [57]
  • TFS TALOS [29]
  • JEOL 3200FSC [19]
  • FEI TECNAI 12 [15]
  • FEI TECNAI SPIRIT [15]
  • FEI TECNAI ARCTICA [13]
  • FEI TECNAI F30 [13]
  • FEI TECNAI 20 [11]
  • JEOL 2200FS [8]
  • JEOL CRYO ARM 200 [8]
  • JEOL 3200FS [7]
  • TFS TALOS F200C [6]
  • JEOL 2100F [3]
  • JEOL 2100 [2]
  • FEI/PHILIPS CM300FEG/ST [1]
  • JEOL 1230 [1]
  • SHUIMU TOTEM 300S [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [4269]
  • LAB6 [385]
  • OTHER [11]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [1127]
  • GATAN K2 SUMMIT 4K X 4K [914]
  • GATAN K3 6K X 4K [830]
  • FEI FALCON IV 4K X 4K [391]
  • GATAN ULTRASCAN 4000 4K X 4K [369]
  • FEI FALCON III 4K X 4K [330]
  • TFS FALCON 4I 4K X 4K [267]
  • GATAN K2 QUANTUM 4K X 4K [164]
  • FEI FALCON II 4K X 4K [122]
  • GATAN K3 BIOCONTINUUM 6K X 4K [36]
  • GATAN K2 BASE 4K X 4K [29]
  • OTHER [24]
  • DIRECT ELECTRON DE-20 5K X 3K [17]
  • TVIPS TEMCAM-F216 2K X 2K [14]
  • FEI EAGLE 4K X 4K [12]
  • TVIPS TEMCAM-F416 4K X 4K [8]
  • FEI CETA 4K X 4K [7]
  • FEI FALCON I 4K X 4K [6]
  • DECTRIS ELA 1K X 0.5K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • DECTRIS SINGLA 1K X 1K [1]
  • FEI EAGLE 2K X 2K [1]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]
  • KODAK SO-163 FILM [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [4543]
  • UniProt [2786]
  • PDBe-Kb [2606]
  • AlphaFold DB [2407]
  • InterPro [2069]
  • Gene Ontology [1991]
  • Pfam [1757]
  • ChEBI [1574]
  • ChEMBL [1423]
  • DrugBank [1331]
  • Complex Portal [852]
  • EMPIAR [573]
  • SCOP2 [77]
  • CATH [76]
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Preview first 10
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EMD-55878
Download Map
3D View
Cryo-EM structure of the inward rectifying potassium channel 7.1 Kir7.1
CryoEM
Release date: July 1, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9tfv
Q-score: 0.449

O'Malley N, Nasrallah C, Churchill A, Bertrand J, Faust B, Wallace BA

To Be Published

EMD-58427
Download Map
3D View
Structure of human excitatory amino acid transporter 3 EAAT3 in complex with B11 nanobody
CryoEM
Release date: July 1, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 31ic
Q-score: 0.458

Li A, Pike ACW, Baronina A, Rodstrom KEJ, Pascoa TC, Chi G, Stefanic S, Carpenter EP, Bullock AN, Dong YY, Sauer DB

To Be Published

EMD-65237
Download Map
3D View
IF1 bound bovine F-ATP synthase planar dimer
CryoEM
Release date: July 1, 2026
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 9vpb
Q-score: 0.213

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65239
Download Map
3D View
IF1 bound bovine ATP synthase monomer: rotary state 1, F1 focused map
CryoEM
Release date: July 1, 2026
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 9vpd
Q-score: 0.343

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65241
Download Map
3D View
IF1 bound bovine ATP synthase tetramer: Fo focused map of the state 1 protomer of dimer B
CryoEM
Release date: July 1, 2026
Resolution: 4.0 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65242
Download Map
3D View
IF1 bound bovine ATP synthase monomer, rotary state 2
CryoEM
Release date: July 1, 2026
Resolution: 2.6 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65243
Download Map
3D View
IF1 bound bovine ATP synthase monomer, rotary state 2, F1 focused map
CryoEM
Release date: July 1, 2026
Resolution: 2.6 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65244
Download Map
3D View
IF1 bound bovine ATP synthase monomer: rotary state 2, Fo focused map
CryoEM
Release date: July 1, 2026
Resolution: 3.6 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65245
Download Map
3D View
IF1 bound bovine ATP synthase monomer: rotary state 3
CryoEM
Release date: July 1, 2026
Resolution: 2.4 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

EMD-65246
Download Map
3D View
IF1 bound bovine ATP synthase monomer: rotary state 3, F1 focused map
CryoEM
Release date: July 1, 2026
Resolution: 2.2 Å
EM Method: Single-particle

Jiko C, Nakano A, Teshirogi Y, Yamashita E, Kurisu G, Standley D, Terada T, Mitsuoka K, Yokoyama K, Gerle C

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.21.665874 ]

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Current Database

  • EMDB [4666]

Current status

  • REL [4666]

Sample type

  • Complex [3890]
  • Protein [3115]
  • Ligand [1738]
  • RNA [513]
  • Cellular component [394]
  • Virus [387]
  • DNA [254]
  • Cell [34]
  • Other [27]
  • Tissue [12]

Organism

  • Homo sapiens [1321]
  • Synthetic construct [499]
  • Mus musculus [239]
  • Escherichia coli [220]
  • Bos taurus [205]
  • Saccharomyces cerevisiae [157]
  • Severe acute respiratory syndrome coronavirus [144]
  • Enterobacteria phage m13 [130]
  • Rattus norvegicus [97]
  • Thermus thermophilus [88]
  • Oryctolagus cuniculus [87]
  • Escherichia coli [70]
  • Sus scrofa [63]
  • Bacillus sp. (strain ps3) [55]
  • Saccharomyces cerevisiae [48]
  • Xenopus laevis [42]
  • Torpedo marmorata [38]
  • Euglena gracilis [36]
  • Trichomonas vaginalis [35]
  • Mycobacterium tuberculosis [35]
  • Tetrahymena thermophila [34]
  • Gallus gallus [33]
  • Staphylococcus phage 812 [30]
  • Enterovirus d [30]
  • Lama glama [29]
  • Human immunodeficiency virus 1 [28]
  • Chlamydomonas reinhardtii [28]
  • Arabidopsis thaliana [27]
  • Vicugna pacos [25]
  • Pseudomonas phage jbd30 [24]
  • Aquifex aeolicus [24]
  • Influenza a virus [22]
  • Saccharomyces cerevisiae [22]
  • Halothiobacillus neapolitanus [22]
  • Escherichia coli [19]
  • Mycolicibacterium smegmatis [18]
  • Vibrio cholerae [17]
  • Azotobacter vinelandii [17]
  • Mycobacterium tuberculosis [16]
  • Pseudoalteromonas sp. s983 [16]
  • Latrodectus tredecimguttatus [16]
  • Vaccinia virus [15]
  • Spinacia oleracea [15]
  • Klebsiella pneumoniae [15]
  • Streptococcus thermophilus [14]
  • Human immunodeficiency virus [14]
  • Salmonella enterica [14]
  • Dengue virus [13]
  • Drosophila melanogaster [13]
  • Pseudomonas phage phi6 [12]
  • Bacillus subtilis [12]
  • Neovison vison [12]
  • Haliangium ochraceum [12]
  • Trypanosoma brucei [12]
  • Hepatitis b virus [11]
  • Enterobacteria phage t4 [11]
  • Caulobacter vibrioides [11]
  • Eastern chimpanzee simian foamy virus [11]
  • Haliangium ochraceum [11]
  • Unidentified adenovirus [10]
  • Streptomyces phage phic31 [10]
  • Orthoflavivirus encephalitidis [10]
  • Geobacillus stearothermophilus [10]
  • Halothiobacillus neapolitanus [10]
  • Danio rerio [10]
  • (no species) [10]
  • Human herpesvirus 1 [9]
  • Avian infectious bursal disease virus [9]
  • Deltainfluenzavirus influenzae [9]
  • Staphylococcus epidermidis [9]
  • Mesorhizobium japonicum [9]
  • Pseudomonas aeruginosa [9]
  • Severe acute respiratory syndrome coronavirus [9]
  • Thermus virus p74-26 [9]
  • Clostridioides difficile [8]
  • Brevibacterium linens [8]
  • Escherichia coli [8]
  • Shewanella oneidensis [8]
  • Cricetulus griseus [7]
  • Streptococcus thermophilus [7]
  • Fako virus [7]
  • Pseudomonas phage 201phi2-1 [7]
  • Pseudomonas aeruginosa [7]
  • Enterobacteria phage t4 [7]
  • Human herpesvirus 8 [7]
  • Chrysotila roscoffensis [7]
  • Nitrosopumilus maritimus [7]
  • Escherichia coli [7]
  • Trypanosoma brucei [7]
  • Caenorhabditis elegans [7]
  • Aggregatibacter actinomycetemcomitans [7]
  • Escherichia virus t7 [6]
  • Semliki forest virus [6]
  • Machupo virus [6]
  • Staphylococcus aureus [6]
  • Staphylococcus epidermidis [6]
  • Methanothermobacter marburgensis [6]
  • Vigna radiata [6]
  • Orthobornavirus bornaense [6]
  • Chaetomium thermophilum [6]

EM Method

  • Single-particle [3649]
  • Tomography [572]
  • Helical reconstruction [262]
  • Subtomogram averaging [175]
  • Electron Crystallography [8]

Resolution

  • < 2Å [88]
  • ≥ 2Å and < 3Å [1054]
  • ≥ 3Å and < 4Å [1786]
  • ≥ 4Å and < 5Å [472]
  • ≥ 5Å and < 6Å [105]
  • ≥ 6Å and < 8Å [192]
  • ≥ 8Å and < 12Å [183]
  • ≥ 12Å and < 16Å [250]
  • ≥ 16Å and < 20Å [67]
  • ≥ 20Å and < 30Å [244]
  • ≥ 30Å [223]

Model molecular weight

  • 0-50 kDa [68]
  • 50-100 kDa [181]
  • 100-250 kDa [758]
  • 250-500 kDa [684]
  • 500-1000 kDa [319]
  • 1-2 MDa [206]
  • 2-5 MDa [137]
  • 5-10 MDa [99]
  • > 10 MDa [58]

Release Date

  • 2026 [460]
  • 2025 [720]
  • 2024 [764]
  • 2023 [683]
  • 2022 [413]
  • 2021 [310]
  • 2020 [249]
  • 2019 [339]
  • 2018 [466]
  • 2017 [128]
  • 2016 [134]

Author by name

  • Ren G [569]
  • Liu J [563]
  • Lei D [251]
  • Mcrae EKS [193]
  • Andersen ES [188]
  • Zhou L [188]
  • Geary C [187]
  • Kishikawa J [179]
  • Zhang M [177]
  • Kishikawa JI [148]
  • Mitsuoka K [146]
  • Yokoyama K [143]
  • Kato T [133]
  • Nakano A [133]
  • Castro C [131]
  • Castro CE [131]
  • Huang C [131]
  • Huang CM [131]
  • Marras A [131]
  • Marras AE [131]
  • Su H [131]
  • Su HJ [131]
  • Liu JF [130]
  • Misra A [130]
  • Reddy S [130]
  • Rudenko G [130]
  • White MA [130]
  • Reddy MVVVS [111]
  • Greber BJ [101]
  • Plevka P [101]
  • Novacek J [93]
  • Liu Y [91]
  • Liu H [88]
  • Li Y [87]
  • Fuzik T [84]
  • Kotecha A [83]
  • Lei M [80]
  • Marino JP [80]
  • Wang L [74]
  • Cushing VI [72]
  • Feng J [72]
  • Zhang X [70]
  • Zhang Y [68]
  • Namba K [67]
  • Ali S [65]
  • Koh AF [64]
  • Cook BD [63]
  • Nakanishi A [63]
  • Narehood SM [63]
  • Herzik MA [62]
  • Bahl AK [61]
  • Barbazanges M [61]
  • Barrett AGM [61]
  • Bondke A [61]
  • Jurgaityte K [61]
  • Kroll SHB [61]
  • Scheiper B [61]
  • Wang J [59]
  • Li S [57]
  • Zhou ZH [57]
  • Lander GC [54]
  • Chiu W [53]
  • Wang Y [53]
  • Hillen HS [51]
  • Park E [50]
  • Yu Y [50]
  • Borgnia MJ [49]
  • Hu Y [48]
  • Shi Y [48]
  • Zhang Z [48]
  • Grotjahn DA [47]
  • Huiskonen JT [46]
  • Wang X [46]
  • Koziej L [45]
  • Larsson DSD [45]
  • Lee SY [45]
  • Selmer M [45]
  • Suo Y [45]
  • Suzuki T [45]
  • Bottcher B [44]
  • Fedor JG [44]
  • Lyumkis D [44]
  • Wu M [44]
  • Aibara S [43]
  • Chen M [43]
  • Frost A [43]
  • Lee S-Y [43]
  • Rossmann MG [43]
  • Itskanov S [42]
  • Ji D [42]
  • Han F [41]
  • He Z [41]
  • Nogales E [41]
  • Tian H [41]
  • Bachochin MJ [40]
  • Dukakis P [40]
  • Enos SE [40]
  • Kuschnerus IC [40]
  • Rahmani H [40]
  • Redford HT [40]

Author by ORCID

  • Ren G [511]
  • Liu J [431]
  • Andersen ES [188]
  • Zhang M [173]
  • Geary C [171]
  • Kishikawa JI [142]
  • Lei D [132]
  • Zhou L [131]
  • Castro CE [131]
  • Marras AE [131]
  • Su HJ [131]
  • White MA [111]
  • Yokoyama K [101]
  • Kato T [90]
  • Lei M [80]
  • Plevka P [75]
  • Greber BJ [65]
  • Narehood SM [63]
  • Kotecha A [61]
  • Fuzik T [59]
  • Cook BD [58]
  • Novacek J [58]
  • Li Y [58]
  • Nakanishi A [55]
  • Cushing VI [54]
  • Hillen HS [51]
  • Zhou L [51]
  • Chiu W [50]
  • Lander GC [48]
  • Ali S [45]
  • Namba K [45]
  • Koh AF [44]
  • Zhou ZH [44]
  • Barbazanges M [43]
  • Barrett AGM [43]
  • Jurgaityte K [43]
  • Lee SY [42]
  • Frost A [42]
  • Ji D [42]
  • Grotjahn DA [41]
  • Borgnia MJ [41]
  • Huiskonen JT [41]
  • Hu Y [41]
  • Wu M [41]
  • Itskanov S [41]
  • Park E [41]
  • Herzik MA [40]
  • Enos SE [40]
  • Bachochin MJ [40]
  • Kuschnerus IC [40]
  • Rahmani H [40]
  • Redford TH [40]
  • Dukakis P [40]
  • Rehling P [39]
  • Finke AF [39]
  • Richter-dennerlein R [39]
  • Boshnakovska A [39]
  • Suo Y [38]
  • Johnson PJ [35]
  • Im W [32]
  • Sazanov LA [32]
  • Mistuoka K [32]
  • Kishikawa J [32]
  • Fujita J [31]
  • Venugopal H [30]
  • Laughlin TG [30]
  • Anraku Y [30]
  • Siborova M [30]
  • Caston JR [30]
  • Pantucek R [29]
  • Mitsuoka K [29]
  • Koziej L [29]
  • Hirose M [28]
  • Peng R [28]
  • Sharma K [28]
  • Wright NJ [28]
  • Bottcher B [28]
  • Van Kuppeveld Fjm [27]
  • Ni T [27]
  • Wang Y [27]
  • Miyazaki N [27]
  • Zhang P [27]
  • Grigorieff N [26]
  • Moss 3Rd Fr [26]
  • Liu LN [26]
  • Hite RK [26]
  • Shigematsu H [26]
  • Kita S [26]
  • Nakagawa T [25]
  • Bowie D [25]
  • Nogales E [25]
  • Tucker M [25]
  • Wang XT [25]
  • Miguez-cabello FJ [25]
  • Gerle C [25]
  • Liu Y [25]
  • Des Georges A [25]
  • Lincoff J [25]
  • Grabe M [25]
  • Azuma Y [25]

Journal

  • NAT COMMUN [1213]
  • TO BE PUBLISHED [379]
  • BIORXIV [366]
  • PNAS [296]
  • NATURE [278]
  • NAT STRUCT MOL BIOL [249]
  • CELL [180]
  • ELIFE [158]
  • J MOL BIOL [158]
  • MOL CELL [153]
  • SCI ADV [135]
  • SCIENCE [125]
  • SCI REP [111]
  • STRUCTURE [87]
  • COMMUN BIOL [80]
  • NUCLEIC ACIDS RES [77]
  • NAT CHEM BIOL [58]
  • ACTA CRYSTALLOGR D STRUCT BIOL [53]
  • EMBO J [48]
  • CELL REP [47]
  • J VIROL [41]
  • J BIOL CHEM [33]
  • PROTEIN SCI [33]
  • BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
  • PNAS NEXUS [30]
  • NAT METHODS [28]
  • NAT MICROBIOL [27]
  • J STRUCT BIOL [26]
  • IUCRJ [25]
  • IMMUNITY [21]
  • NAT NANOTECHNOL [19]
  • ACS NANO [18]
  • CELL HOST MICROBE [18]
  • NAT PLANTS [18]
  • CELL RES [17]
  • NAT NEUROSCI [14]
  • PLOS PATHOG [14]
  • J MED CHEM [13]
  • SCI TRANSL MED [13]
  • J CELL BIOL [12]
  • ADV SCI [11]
  • EMBO REP [11]
  • J AM CHEM SOC [11]
  • PLOS BIOL [10]
  • J BACTERIOL [9]
  • LIFE SCI ALLIANCE [8]
  • NAT CATAL [8]
  • RES SQ [8]
  • VIRUSES [8]
  • BIOMOLECULES [7]
  • FEBS LETT [7]
  • BIOCHEMISTRY [6]
  • BIOCHIM BIOPHYS ACTA BIOENERG [6]
  • PROG BIOPHYS MOL BIOL [6]
  • HEMASPHERE [5]
  • INT J BIOL MACROMOL [5]
  • MBIO [5]
  • MICROBIOL IMMUNOL [5]
  • ULTRAMICROSCOPY [5]
  • ANGEW CHEM INT ED ENGL [4]
  • BIOCHEM BIOPHYS RES COMMUN [4]
  • CELL DISCOV [4]
  • DEV CELL [4]
  • FEBS OPEN BIO [4]
  • FRONT PLANT SCI [4]
  • INT J MOL SCI [4]
  • OPEN BIOL [4]
  • ACS CATAL [3]
  • BIOPHYS J [3]
  • CURR RES STRUCT BIOL [3]
  • ELECTROCHIM ACTA [3]
  • FEBS J [3]
  • ISCIENCE [3]
  • J STRUCT BIOL X [3]
  • J.BIOCHEM. [3]
  • MOL THER ADV [3]
  • NEURON [3]
  • NPJ VACCINES [3]
  • VIROLOGY [3]
  • ACS CHEM BIOL [2]
  • APPL ENVIRON MICROBIOL [2]
  • CHEM COMMUN [2]
  • CHEM COMMUN (CAMB) [2]
  • CHEM MED CHEM [2]
  • COMMUN CHEM [2]
  • FRONT MOL BIOSCI [2]
  • J ENZYME INHIB MED CHEM [2]
  • J GEN PHYSIOL [2]
  • J.MUSCLE RES.CELL.MOTIL. [2]
  • MACROMOL RAPID COMMUN [2]
  • MICROB BIOTECHNOL [2]
  • MICROBIOL SPECTR [2]
  • MICROSC MICROANAL [2]
  • MOL BIOL CELL [2]
  • MOL MICROBIOL [2]
  • NAT CELL BIOL [2]
  • PLANT COMMUN. [2]
  • SCI IMMUNOL [2]
  • ACS MED.CHEM.LETT. [1]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]

Software

  • RELION [2079]
  • CRYOSPARC [1928]
  • CTFFIND [418]
  • GCTF [192]
  • TOMOCTF [156]
  • IMOD [154]
  • FREALIGN [111]
  • WARP [99]
  • CISTEM [90]
  • IPET [69]
  • JSPR [52]
  • EMAN2 [46]
  • EMAN [43]
  • COOT [41]
  • UCSF CHIMERAX [33]
  • CRYOLO [32]
  • DYNAMO [28]
  • APPION [26]
  • XMIPP [24]
  • CTFTILT [19]
  • J3DR [18]
  • PHENIX [18]
  • JALIGN [16]
  • SPHIRE [16]
  • SCIPION [14]
  • SPIDER [13]
  • PYTOM [12]
  • UCSF CHIMERA [12]
  • EMCLARITY [11]
  • BSOFT [10]
  • CTFFIND4 [9]
  • FOCUS [9]
  • ISOLDE [9]
  • CTFFIND3 [8]
  • SIMPLE [8]
  • STOPGAP [8]
  • EMIRA [7]
  • IMAGIC [7]
  • MATLAB [7]
  • ARETOMO [6]
  • NOVACTF [6]
  • AIMLESS [5]
  • EMREADY [5]
  • AUTO3DEM [4]
  • FREALIX [4]
  • MPSA [4]
  • IMIRS [3]
  • PEET [3]
  • SPARX [3]
  • SPRING [3]
  • EMAN BOXER [2]
  • GCTF/RELION [2]
  • MOTIONCORR2 [2]
  • TOM TOOLBOX [2]
  • TOMOALIGN [2]
  • ACE [1]
  • CCP4 PACKAGE [1]
  • COW [1]
  • DIALS [1]
  • E2HELIXBOXER.PY [1]
  • ELITE3D [1]
  • EMAN, JSPR [1]
  • FITCTF2.PY [1]
  • ICON [1]
  • PHASER [1]
  • RELION2 [1]
  • RSREF [1]
  • SEGREFINETHREED [1]
  • SERIALEM [1]

Microscope

  • FEI TITAN KRIOS [2404]
  • TFS KRIOS [1060]
  • ZEISS LIBRA120PLUS [350]
  • FEI TALOS ARCTICA [213]
  • TFS GLACIOS [177]
  • JEOL CRYO ARM 300 [108]
  • FEI POLARA 300 [82]
  • FEI TITAN [66]
  • FEI TECNAI F20 [57]
  • TFS TALOS [29]
  • JEOL 3200FSC [19]
  • FEI TECNAI 12 [15]
  • FEI TECNAI SPIRIT [15]
  • FEI TECNAI ARCTICA [13]
  • FEI TECNAI F30 [13]
  • FEI TECNAI 20 [11]
  • JEOL 2200FS [8]
  • JEOL CRYO ARM 200 [8]
  • JEOL 3200FS [7]
  • TFS TALOS F200C [6]
  • JEOL 2100F [3]
  • JEOL 2100 [2]
  • FEI/PHILIPS CM300FEG/ST [1]
  • JEOL 1230 [1]
  • SHUIMU TOTEM 300S [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [4269]
  • LAB6 [385]
  • OTHER [11]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [1127]
  • GATAN K2 SUMMIT 4K X 4K [914]
  • GATAN K3 6K X 4K [830]
  • FEI FALCON IV 4K X 4K [391]
  • GATAN ULTRASCAN 4000 4K X 4K [369]
  • FEI FALCON III 4K X 4K [330]
  • TFS FALCON 4I 4K X 4K [267]
  • GATAN K2 QUANTUM 4K X 4K [164]
  • FEI FALCON II 4K X 4K [122]
  • GATAN K3 BIOCONTINUUM 6K X 4K [36]
  • GATAN K2 BASE 4K X 4K [29]
  • OTHER [24]
  • DIRECT ELECTRON DE-20 5K X 3K [17]
  • TVIPS TEMCAM-F216 2K X 2K [14]
  • FEI EAGLE 4K X 4K [12]
  • TVIPS TEMCAM-F416 4K X 4K [8]
  • FEI CETA 4K X 4K [7]
  • FEI FALCON I 4K X 4K [6]
  • DECTRIS ELA 1K X 0.5K [3]
  • DIRECT ELECTRON APOLLO 4K X 4K [2]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-64 8K X 8K [2]
  • DECTRIS SINGLA 1K X 1K [1]
  • FEI EAGLE 2K X 2K [1]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN ORIUS SC200 2K X 2K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]
  • KODAK SO-163 FILM [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [4543]
  • UniProt [2786]
  • PDBe-Kb [2606]
  • AlphaFold DB [2407]
  • InterPro [2069]
  • Gene Ontology [1991]
  • Pfam [1757]
  • ChEBI [1574]
  • ChEMBL [1423]
  • DrugBank [1331]
  • Complex Portal [852]
  • EMPIAR [573]
  • SCOP2 [77]
  • CATH [76]