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Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Cellular component [13]
  • Cell [4]
  • Complex [1]
  • Protein [1]
  • Virus [1]

Organism

  • Danio rerio [9]
  • Chlamydomonas reinhardtii [4]
  • Neospora caninum [3]
  • Mycobacterium phage bxb1 [1]
  • Synthetic construct [1]
  • Homo sapiens [1]

EM Method

  • Subtomogram averaging [19]

Resolution

  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [9]

Model molecular weight

  • 5-10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [1]
  • 2024 [5]
  • 2023 [12]

Author by name

  • Kikkawa M [9]
  • Morikawa M [9]
  • Yamaguchi H [9]
  • Alvarez Viar G [4]
  • Bolognini D [4]
  • Capasso P [4]
  • Klena N [4]
  • Martino F [4]
  • Nievergelt AP [4]
  • Pigino G [4]
  • Cai K [3]
  • Gui L [3]
  • Nicastro D [3]
  • O Shaughnessy Wj [3]
  • Reese ML [3]
  • Reetz E [3]
  • Ahn G [1]
  • Amorim MJ [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Carr A [1]
  • Chemielewski D [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Conway JF [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Duran DC [1]
  • Favor A [1]
  • Fischer K [1]
  • Freeman KG [1]
  • Hatfull GF [1]
  • Hernandez C [1]
  • Ho MC [1]
  • Holt LJ [1]
  • Huang B [1]
  • Huet A [1]
  • Jacobs-sera D [1]
  • Joyce E [1]
  • Kang A [1]
  • Kibler RD [1]
  • Krischuns T [1]
  • Lee S [1]
  • Lowary TL [1]
  • Macale LS [1]
  • Makroczyova J [1]
  • Mondal S [1]
  • Narsico JT [1]
  • O Riain A [1]
  • Ortiz V [1]
  • Park D [1]
  • Perez RJ [1]
  • Peterl S [1]
  • Podgorski J [1]
  • Shu T [1]
  • Silva BH [1]
  • Vale-costa S [1]
  • Wachsmuth-melm M [1]
  • Wang S [1]
  • Weidle C [1]
  • White SJ [1]
  • Wu K [1]
  • Xie Y [1]

Author by ORCID

  • Kikkawa M [9]
  • Yamaguchi H [9]
  • Morikawa M [9]
  • Capasso P [4]
  • Pigino G [4]
  • Reese ML [3]
  • Nicastro D [3]
  • Gui L [3]
  • Cai K [3]
  • O'shaughnessy WJ [3]
  • Wang S [1]
  • Kang A [1]
  • Shu T [1]
  • Makroczyova J [1]
  • Kibler RD [1]
  • Baker D [1]
  • Bera AK [1]
  • Vale-costa S [1]
  • Lee S [1]
  • O'riain A [1]
  • Freeman KG [1]
  • Mondal S [1]
  • Amorim MJ [1]
  • Chemielewski D [1]
  • Wu K [1]
  • Chen W [1]
  • Ho MC [1]
  • Conway JF [1]
  • Dimaio F [1]
  • Chlanda P [1]
  • Wachsmuth-melm M [1]
  • Weidle C [1]
  • Favor A [1]
  • Xie Y [1]
  • Duran DC [1]
  • Borst AJ [1]
  • Hernandez C [1]
  • Joyce E [1]

Journal

  • ELIFE [9]
  • CURR BIOL [4]
  • NAT COMMUN [4]
  • CELL [1]
  • NATURE [1]

Software

  • IMOD [9]
  • PEET [9]
  • EMAN2 [2]
  • DYNAMO [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN [4]
  • FEI TITAN KRIOS [4]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • PDB [19]
  • EMPIAR [1]
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Showing 1 - 10 of 19. Page 1 of 2
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EMD-70685
Download Map
3D View
Two Component Protein Nano-Particle T 3 . De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
CryoEM
Release date: May 20, 2026
Resolution: 31.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9op9
Q-score: 0.058

Wang S, Xie Y, Chemielewski D, Weidle C, Shu T, Ahn G, Kibler RD, Hernandez C, Chen W, Duran DC, Carr A, Bera AK, Lee S, Decarreau J, Kang A, Brackenbrough E, Joyce E, Wu K, Borst AJ, Favor A, Huang B, DiMaio F, Holt LJ, Baker D

Nature (2026) [ DOI: doi:10.1038/s41586-026-10464-0 Pubmed: 42162421 ]

EMD-51790
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Subtomogram average of intracellular influenza A virus hemagglutinin subtype H1
CryoEM
Release date: Oct. 29, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Wachsmuth-Melm M, Peterl S, O'Riain A, Makroczyova J, Fischer K, Krischuns T, Vale-Costa S, Amorim MJ, Chlanda P

Nat Commun (2025) 16 pp. 9394-9394 [ DOI: doi:10.1038/s41467-025-65117-z Pubmed: 41130956 ]

EMD-50564
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96 nm repeat of the axonemal microtubule doublets of the tpg1 strain from C.reinhardtii
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50565
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96nm repeat of the axonemal doublets from the tubulin glycylation depleted ttll3 strain from C.reinhardtii
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50568
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96nm repeat of the axonemal doublets from C.reinhardtii decorated with polyE antibodies
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50569
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96nm repeat of the axonemal doublets of the tpg1 strain from C.reinhardtii incubated with polyE antiobodies
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-46702
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Raw data
EMPIAR-12238
Subtomogram averaging of Bxb1 phage capsid DNA-filled during the infection state
CryoEM
Release date: Sept. 18, 2024
Resolution: 11.65 Å
EM Method: Subtomogram averaging

Freeman KG, Mondal S, Macale LS, Podgorski J, White SJ, Silva BH, Ortiz V, Huet A, Perez RJ, Narsico JT, Ho MC, Jacobs-Sera D, Lowary TL, Conway JF, Park D, Hatfull GF

Cell (2025) 188 pp. 2925-2942.e17 [ Pubmed: 40239650 DOI: doi:10.1016/j.cell.2025.03.027 ]

EMD-34791
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Doublet microtubule of zebrafish sperm axoneme, WT
CryoEM
Release date: April 26, 2023
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Yamaguchi H, Morikawa M, Kikkawa M

eLife (2023) 12 [ DOI: doi:10.7554/eLife.84860 Pubmed: 37057896 ]

EMD-34792
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Radial spoke 1 of zebrafish sperm axoneme, WT
CryoEM
Release date: April 26, 2023
Resolution: 21.4 Å
EM Method: Subtomogram averaging

Yamaguchi H, Morikawa M, Kikkawa M

eLife (2023) 12 [ DOI: doi:10.7554/eLife.84860 Pubmed: 37057896 ]

EMD-34794
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Radial spoke 3 of zebrafish sperm axoneme, WT
CryoEM
Release date: April 26, 2023
Resolution: 21.7 Å
EM Method: Subtomogram averaging

Yamaguchi H, Morikawa M, Kikkawa M

eLife (2023) 12 [ DOI: doi:10.7554/eLife.84860 Pubmed: 37057896 ]

Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Cellular component [13]
  • Cell [4]
  • Complex [1]
  • Protein [1]
  • Virus [1]

Organism

  • Danio rerio [9]
  • Chlamydomonas reinhardtii [4]
  • Neospora caninum [3]
  • Mycobacterium phage bxb1 [1]
  • Synthetic construct [1]
  • Homo sapiens [1]

EM Method

  • Subtomogram averaging [19]

Resolution

  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [9]

Model molecular weight

  • 5-10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [1]
  • 2024 [5]
  • 2023 [12]

Author by name

  • Kikkawa M [9]
  • Morikawa M [9]
  • Yamaguchi H [9]
  • Alvarez Viar G [4]
  • Bolognini D [4]
  • Capasso P [4]
  • Klena N [4]
  • Martino F [4]
  • Nievergelt AP [4]
  • Pigino G [4]
  • Cai K [3]
  • Gui L [3]
  • Nicastro D [3]
  • O Shaughnessy Wj [3]
  • Reese ML [3]
  • Reetz E [3]
  • Ahn G [1]
  • Amorim MJ [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Carr A [1]
  • Chemielewski D [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Conway JF [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Duran DC [1]
  • Favor A [1]
  • Fischer K [1]
  • Freeman KG [1]
  • Hatfull GF [1]
  • Hernandez C [1]
  • Ho MC [1]
  • Holt LJ [1]
  • Huang B [1]
  • Huet A [1]
  • Jacobs-sera D [1]
  • Joyce E [1]
  • Kang A [1]
  • Kibler RD [1]
  • Krischuns T [1]
  • Lee S [1]
  • Lowary TL [1]
  • Macale LS [1]
  • Makroczyova J [1]
  • Mondal S [1]
  • Narsico JT [1]
  • O Riain A [1]
  • Ortiz V [1]
  • Park D [1]
  • Perez RJ [1]
  • Peterl S [1]
  • Podgorski J [1]
  • Shu T [1]
  • Silva BH [1]
  • Vale-costa S [1]
  • Wachsmuth-melm M [1]
  • Wang S [1]
  • Weidle C [1]
  • White SJ [1]
  • Wu K [1]
  • Xie Y [1]

Author by ORCID

  • Kikkawa M [9]
  • Yamaguchi H [9]
  • Morikawa M [9]
  • Capasso P [4]
  • Pigino G [4]
  • Reese ML [3]
  • Nicastro D [3]
  • Gui L [3]
  • Cai K [3]
  • O'shaughnessy WJ [3]
  • Wang S [1]
  • Kang A [1]
  • Shu T [1]
  • Makroczyova J [1]
  • Kibler RD [1]
  • Baker D [1]
  • Bera AK [1]
  • Vale-costa S [1]
  • Lee S [1]
  • O'riain A [1]
  • Freeman KG [1]
  • Mondal S [1]
  • Amorim MJ [1]
  • Chemielewski D [1]
  • Wu K [1]
  • Chen W [1]
  • Ho MC [1]
  • Conway JF [1]
  • Dimaio F [1]
  • Chlanda P [1]
  • Wachsmuth-melm M [1]
  • Weidle C [1]
  • Favor A [1]
  • Xie Y [1]
  • Duran DC [1]
  • Borst AJ [1]
  • Hernandez C [1]
  • Joyce E [1]

Journal

  • ELIFE [9]
  • CURR BIOL [4]
  • NAT COMMUN [4]
  • CELL [1]
  • NATURE [1]

Software

  • IMOD [9]
  • PEET [9]
  • EMAN2 [2]
  • DYNAMO [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN [4]
  • FEI TITAN KRIOS [4]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • PDB [19]
  • EMPIAR [1]