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Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Cellular component [13]
  • Cell [4]
  • Complex [3]
  • Protein [1]
  • Virus [1]

Organism

  • Danio rerio [9]
  • Chlamydomonas reinhardtii [4]
  • Neospora caninum [3]
  • Mycobacterium phage bxb1 [1]
  • Synthetic construct [1]
  • Vibrio cholerae [1]
  • Homo sapiens [1]
  • Vibrio cholerae [1]

EM Method

  • Subtomogram averaging [19]
  • Single-particle [2]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [9]

Model molecular weight

  • 5-10 MDa [1]

Release Date

  • 2026 [3]
  • 2025 [1]
  • 2024 [5]
  • 2023 [12]

Author by name

  • Kikkawa M [9]
  • Morikawa M [9]
  • Yamaguchi H [9]
  • Alvarez Viar G [4]
  • Bolognini D [4]
  • Capasso P [4]
  • Klena N [4]
  • Martino F [4]
  • Nievergelt AP [4]
  • Pigino G [4]
  • Cai K [3]
  • Gui L [3]
  • Nicastro D [3]
  • O Shaughnessy Wj [3]
  • Reese ML [3]
  • Reetz E [3]
  • Fatma S [2]
  • Miller DJ [2]
  • Truong VH [2]
  • Ahn G [1]
  • Ahsan M [1]
  • Amorim MJ [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Carr A [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Conway JF [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Duran DC [1]
  • Favor A [1]
  • Fischer K [1]
  • Freeman KG [1]
  • Hatfull GF [1]
  • Hernandez C [1]
  • Ho MC [1]
  • Holt LJ [1]
  • Huang B [1]
  • Huet A [1]
  • Jacobs-sera D [1]
  • Joyce E [1]
  • Kang A [1]
  • Kellogg EH [1]
  • Kellogg EHK [1]
  • Kibler RD [1]
  • Krischuns T [1]
  • Lee S [1]
  • Lowary TL [1]
  • Macale LS [1]
  • Makroczyova J [1]
  • Mondal S [1]
  • Narsico JT [1]
  • O Riain A [1]
  • Ortiz V [1]
  • Palermo G [1]
  • Park D [1]
  • Perez RJ [1]
  • Peterl S [1]
  • Pindi C [1]
  • Podgorski J [1]
  • Sheng Y [1]
  • Shu T [1]
  • Silva BH [1]
  • Vale-costa S [1]
  • Wachsmuth-melm M [1]
  • Wang S [1]
  • Weidle C [1]
  • White SJ [1]
  • Wu K [1]
  • Xie Y [1]

Author by ORCID

  • Kikkawa M [9]
  • Yamaguchi H [9]
  • Morikawa M [9]
  • Capasso P [4]
  • Pigino G [4]
  • Reese ML [3]
  • Nicastro D [3]
  • Gui L [3]
  • Cai K [3]
  • O'shaughnessy WJ [3]
  • Wang S [1]
  • Kang A [1]
  • Shu T [1]
  • Huet A [1]
  • Makroczyova J [1]
  • Kibler RD [1]
  • Baker D [1]
  • Bera AK [1]
  • Vale-costa S [1]
  • Lee S [1]
  • O'riain A [1]
  • Freeman KG [1]
  • Mondal S [1]
  • Amorim MJ [1]
  • Chmielewski D [1]
  • Wu K [1]
  • Chen W [1]
  • Ho MC [1]
  • Conway JF [1]
  • Dimaio F [1]
  • Chlanda P [1]
  • Wachsmuth-melm M [1]
  • Weidle C [1]
  • Favor A [1]
  • Xie Y [1]
  • Miller DJ [1]
  • Truong VH [1]
  • Duran DC [1]
  • Borst AJ [1]
  • Hernandez C [1]
  • Joyce E [1]

Journal

  • ELIFE [9]
  • CURR BIOL [4]
  • NAT COMMUN [4]
  • CELL [1]
  • NATURE [1]
  • SCI ADV [1]
  • TO BE PUBLISHED [1]

Software

  • IMOD [9]
  • PEET [9]
  • CRYOSPARC [2]
  • EMAN2 [2]
  • DYNAMO [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN [4]
  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [4]

External links

  • EMPIAR [1]
  • PDB [1]
Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
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Preview 10 entries View All Download file
EMD-72640
Download Map
3D View
Consensus map of the IF-3a transposase complex with synaptic ends
CryoEM
Consensus map
Release date: Sept. 2, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Truong VH, Miller DJ, Fatma S, Sheng Y, Pindi C, Ahsan M, Palermo G, Kellogg EH

Sci Adv (2026) 12 pp. eaee1374-eaee1374 [ Pubmed: 42826193 DOI: doi:10.1126/sciadv.aee1374 ]

EMD-72648
Download Map
3D View
Focused refinement of core region of 1F3A transposase complex with synapsed ends
Focused map
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.48 Å
EM Method: Single-particle

Miller DJ, Truong VH

To Be Published

EMD-70685
Download Map
3D View
Two Component Protein Nano-Particle T 3 . De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
CryoEM
Release date: May 20, 2026
Resolution: 31.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9op9
Q-score: 0.058
Similar entry percentile: 100%

Wang S, Xie Y, Chmielewski D, Weidle C, Shu T, Ahn G, Kibler RD, Hernandez C, Chen W, Duran DC, Carr A, Bera AK, Lee S, Decarreau J, Kang A, Brackenbrough E, Joyce E, Wu K, Borst AJ, Favor A, Huang B, DiMaio F, Holt LJ, Baker D

Nature (2026) 655 pp. 251-258 [ DOI: doi:10.1038/s41586-026-10464-0 Pubmed: 42162421 ]

EMD-51790
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3D View
Subtomogram average of intracellular influenza A virus hemagglutinin subtype H1
CryoEM
Release date: Oct. 29, 2025
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Wachsmuth-Melm M, Peterl S, O'Riain A, Makroczyova J, Fischer K, Krischuns T, Vale-Costa S, Amorim MJ, Chlanda P

Nat Commun (2025) 16 pp. 9394-9394 [ DOI: doi:10.1038/s41467-025-65117-z Pubmed: 41130956 ]

EMD-50564
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3D View
96 nm repeat of the axonemal microtubule doublets of the tpg1 strain from C.reinhardtii
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50565
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3D View
96nm repeat of the axonemal doublets from the tubulin glycylation depleted ttll3 strain from C.reinhardtii
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50568
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3D View
96nm repeat of the axonemal doublets from C.reinhardtii decorated with polyE antibodies
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-50569
Download Map
3D View
96nm repeat of the axonemal doublets of the tpg1 strain from C.reinhardtii incubated with polyE antiobodies
CryoEM
Release date: Oct. 2, 2024
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Alvarez Viar G, Klena N, Martino F, Nievergelt AP, Bolognini D, Capasso P, Pigino G

Curr Biol (2024) 34 pp. 4464-4475.e9 [ DOI: doi:10.1016/j.cub.2024.08.021 Pubmed: 39270640 ]

EMD-46702
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3D View
Raw data
EMPIAR-12238
Subtomogram averaging of Bxb1 phage capsid DNA-filled during the infection state
CryoEM
Release date: Sept. 18, 2024
Resolution: 11.65 Å
EM Method: Subtomogram averaging

Freeman KG, Mondal S, Macale LS, Podgorski J, White SJ, Silva BH, Ortiz V, Huet A, Perez RJ, Narsico JT, Ho MC, Jacobs-Sera D, Lowary TL, Conway JF, Park D, Hatfull GF

Cell (2025) 188 pp. 2925-2942.e17 [ DOI: doi:10.1016/j.cell.2025.03.027 Pubmed: 40239650 ]

EMD-34791
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3D View
Doublet microtubule of zebrafish sperm axoneme, WT
CryoEM
Release date: April 26, 2023
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Yamaguchi H, Morikawa M, Kikkawa M

eLife (2023) 12 [ Pubmed: 37057896 DOI: doi:10.7554/eLife.84860 ]

Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Cellular component [13]
  • Cell [4]
  • Complex [3]
  • Protein [1]
  • Virus [1]

Organism

  • Danio rerio [9]
  • Chlamydomonas reinhardtii [4]
  • Neospora caninum [3]
  • Mycobacterium phage bxb1 [1]
  • Synthetic construct [1]
  • Vibrio cholerae [1]
  • Homo sapiens [1]
  • Vibrio cholerae [1]

EM Method

  • Subtomogram averaging [19]
  • Single-particle [2]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [6]
  • ≥ 30Å [9]

Model molecular weight

  • 5-10 MDa [1]

Release Date

  • 2026 [3]
  • 2025 [1]
  • 2024 [5]
  • 2023 [12]

Author by name

  • Kikkawa M [9]
  • Morikawa M [9]
  • Yamaguchi H [9]
  • Alvarez Viar G [4]
  • Bolognini D [4]
  • Capasso P [4]
  • Klena N [4]
  • Martino F [4]
  • Nievergelt AP [4]
  • Pigino G [4]
  • Cai K [3]
  • Gui L [3]
  • Nicastro D [3]
  • O Shaughnessy Wj [3]
  • Reese ML [3]
  • Reetz E [3]
  • Fatma S [2]
  • Miller DJ [2]
  • Truong VH [2]
  • Ahn G [1]
  • Ahsan M [1]
  • Amorim MJ [1]
  • Baker D [1]
  • Bera AK [1]
  • Borst AJ [1]
  • Brackenbrough E [1]
  • Carr A [1]
  • Chen W [1]
  • Chlanda P [1]
  • Chmielewski D [1]
  • Conway JF [1]
  • Decarreau J [1]
  • Dimaio F [1]
  • Duran DC [1]
  • Favor A [1]
  • Fischer K [1]
  • Freeman KG [1]
  • Hatfull GF [1]
  • Hernandez C [1]
  • Ho MC [1]
  • Holt LJ [1]
  • Huang B [1]
  • Huet A [1]
  • Jacobs-sera D [1]
  • Joyce E [1]
  • Kang A [1]
  • Kellogg EH [1]
  • Kellogg EHK [1]
  • Kibler RD [1]
  • Krischuns T [1]
  • Lee S [1]
  • Lowary TL [1]
  • Macale LS [1]
  • Makroczyova J [1]
  • Mondal S [1]
  • Narsico JT [1]
  • O Riain A [1]
  • Ortiz V [1]
  • Palermo G [1]
  • Park D [1]
  • Perez RJ [1]
  • Peterl S [1]
  • Pindi C [1]
  • Podgorski J [1]
  • Sheng Y [1]
  • Shu T [1]
  • Silva BH [1]
  • Vale-costa S [1]
  • Wachsmuth-melm M [1]
  • Wang S [1]
  • Weidle C [1]
  • White SJ [1]
  • Wu K [1]
  • Xie Y [1]

Author by ORCID

  • Kikkawa M [9]
  • Yamaguchi H [9]
  • Morikawa M [9]
  • Capasso P [4]
  • Pigino G [4]
  • Reese ML [3]
  • Nicastro D [3]
  • Gui L [3]
  • Cai K [3]
  • O'shaughnessy WJ [3]
  • Wang S [1]
  • Kang A [1]
  • Shu T [1]
  • Huet A [1]
  • Makroczyova J [1]
  • Kibler RD [1]
  • Baker D [1]
  • Bera AK [1]
  • Vale-costa S [1]
  • Lee S [1]
  • O'riain A [1]
  • Freeman KG [1]
  • Mondal S [1]
  • Amorim MJ [1]
  • Chmielewski D [1]
  • Wu K [1]
  • Chen W [1]
  • Ho MC [1]
  • Conway JF [1]
  • Dimaio F [1]
  • Chlanda P [1]
  • Wachsmuth-melm M [1]
  • Weidle C [1]
  • Favor A [1]
  • Xie Y [1]
  • Miller DJ [1]
  • Truong VH [1]
  • Duran DC [1]
  • Borst AJ [1]
  • Hernandez C [1]
  • Joyce E [1]

Journal

  • ELIFE [9]
  • CURR BIOL [4]
  • NAT COMMUN [4]
  • CELL [1]
  • NATURE [1]
  • SCI ADV [1]
  • TO BE PUBLISHED [1]

Software

  • IMOD [9]
  • PEET [9]
  • CRYOSPARC [2]
  • EMAN2 [2]
  • DYNAMO [1]

Microscope

  • TFS KRIOS [10]
  • FEI TITAN [4]
  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [2]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K3 6K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [4]

External links

  • EMPIAR [1]
  • PDB [1]