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Current Database

  • EMDB [88]

Current status

  • REL [88]

Sample type

  • Complex [83]
  • Protein [27]
  • Cellular component [5]
  • DNA [1]
  • Other [1]
  • Tissue [1]
  • Virus [1]

Organism

  • Homo sapiens [40]
  • Human immunodeficiency virus 1 [17]
  • Escherichia coli [12]
  • Synthetic construct [10]
  • Sus scrofa [10]
  • Spinacia oleracea [6]
  • Saccharomyces cerevisiae [5]
  • Thermoplasma acidophilum [3]
  • Kluyveromyces lactis [3]
  • Plasmodium falciparum [3]
  • Gallus gallus [3]
  • Escherichia phage phix174 [2]
  • (no species) [2]
  • Salmonella enterica [2]
  • Thermus thermophilus [2]
  • Influenza b virus [1]
  • Methanothermobacter marburgensis [1]
  • Clostridium tetani [1]
  • Influenza a virus [1]
  • Arabidopsis thaliana [1]
  • Enterobacter cloacae [1]
  • Cafeteria roenbergensis virus [1]
  • Methanothermobacter marburgensis [1]
  • Xenopus laevis [1]
  • Equus caballus [1]
  • Lama glama [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [83]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [36]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [11]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [3]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [3]

Model molecular weight

  • 2-5 MDa [1]

Release Date

  • 2018 [48]
  • 2017 [27]
  • 2016 [13]

Author by name

  • Ward AB [17]
  • Wilson IA [16]
  • Ramakrishnan V [13]
  • Urlaub H [13]
  • Berndsen ZT [12]
  • Landais E [12]
  • Rantalainen K [12]
  • Copps J [11]
  • Murrell S [11]
  • Noble AJ [11]
  • Poignard P [11]
  • Torres JL [11]
  • Umotoy J [11]
  • Wu M [11]
  • Cramer P [10]
  • Farnung L [10]
  • Gordiyenko Y [10]
  • Vos SM [10]
  • Cao L [9]
  • Paulson JC [9]
  • Bepler T [8]
  • Berger B [8]
  • Brasch J [8]
  • Brown A [8]
  • Morin A [8]
  • Omorodion O [8]
  • Shapiro L [8]
  • Fernandez IS [7]
  • De Val N [7]
  • Boehning M [6]
  • Forsberg BO [6]
  • Kimanius D [6]
  • Lindahl E [6]
  • Linden A [6]
  • Wigge C [6]
  • Aibara S [5]
  • Amunts A [5]
  • Burton DR [5]
  • Hussain T [5]
  • Llacer JL [5]
  • Pallesen J [5]
  • Paul B [5]
  • Potter CS [5]
  • Berndsens ZB [4]
  • Cottrell CA [4]
  • Moore JP [4]
  • Ozorowski G [4]
  • Rantalainen KR [4]
  • Agafonov DE [3]
  • Algate P [3]
  • Baldassarre M [3]
  • Bertram K [3]
  • Briney B [3]
  • Calderwood DA [3]
  • Cappelletti A [3]
  • Carragher B [3]
  • Chan-hui PY [3]
  • Cupo A [3]
  • Dandey VP [3]
  • Dybkov O [3]
  • Eren K [3]
  • Hinnebusch AG [3]
  • Huehn A [3]
  • Huehn AR [3]
  • Huet-calderwood C [3]
  • Iwamoto DV [3]
  • Karita E [3]
  • Kastner B [3]
  • Kaur S [3]
  • Kumar R [3]
  • Lie Y [3]
  • Lorsch JR [3]
  • Lyumkis D [3]
  • Murrell B [3]
  • Nanda JD [3]
  • Pond SLK [3]
  • Pugach P [3]
  • Radjainia M [3]
  • Ramos A [3]
  • Saini AK [3]
  • Scheres SHW [3]
  • Simon B [3]
  • Sindelar CV [3]
  • Smith D [3]
  • Smith ML [3]
  • Stanfield RL [3]
  • Stark H [3]
  • Tan YZ [3]
  • Vonck J [3]
  • Wei H [3]
  • Wickramasinghe L [3]
  • Will CL [3]
  • Wrin T [3]
  • Zhang Z [3]
  • Abid Ali F [2]
  • Abrescia NGA [2]
  • Albers SV [2]
  • Baerland N [2]
  • Baumeister W [2]
  • Beattie TR [2]

Journal

  • NATURE [24]
  • ELIFE [10]
  • CELL REP [8]
  • NAT COMMUN [8]
  • RES COMPUT MOL BIOL [8]
  • CELL [6]
  • TO BE PUBLISHED [5]
  • NAT STRUCT MOL BIOL [4]
  • IMMUNITY [3]
  • IUCRJ [3]
  • NAT METHODS [3]
  • SCIENCE [3]
  • NAT PLANTS [2]
  • PNAS [2]
  • ADV STRUCT CHEM IMAGING [1]
  • ANGEW CHEM INT ED ENGL [1]
  • EMBO J [1]
  • EMBO REP [1]
  • NAT MICROBIOL [1]
  • SCI ADV [1]
  • SCI REP [1]

Software

  • RELION [59]
  • GCTF [20]
  • CRYOSPARC [14]
  • CTFFIND [13]
  • CTFFIND3 [4]
  • EMAN [1]
  • EMAN2 [1]
  • FREALIGN [1]
  • MOTIONCORR2 [1]

Microscope

  • FEI TITAN KRIOS [57]
  • FEI POLARA 300 [14]
  • FEI TECNAI SPIRIT [6]
  • FEI TECNAI F20 [4]
  • FEI TALOS ARCTICA [2]
  • JEOL 2200FSC [2]
  • FEI/PHILIPS CM300FEG/ST [1]
  • JEOL 3000SFF [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [82]
  • LAB6 [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [41]
  • FEI FALCON II 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [11]
  • FEI FALCON III 4K X 4K [7]
  • OTHER [7]
  • TVIPS TEMCAM-F416 4K X 4K [5]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • KODAK SO-163 FILM [1]

External links

  • AlphaFold DB [20]
  • PDBe-Kb [20]
  • UniProt [20]
  • Complex Portal [9]
  • EMPIAR [3]
  • PDB [2]
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Showing 1 - 10 of 88. Page 1 of 9
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EMD-0263
Download Map
3D View
Horse spleen apo-ferritin with beam tilt correction in RELION-3.0
CryoEM
Release date: Dec. 26, 2018
Resolution: 2.18 Å
EM Method: Single-particle

Zivanov J, Nakane T, Forsberg BO, Kimanius D, Hagen WJ, Lindahl E, Scheres SH

eLife (2018) 7 [ Pubmed: 30412051 DOI: doi:10.7554/eLife.42166 ]

EMD-9190
Download Map
3D View
Cell-free-expressed Pyridoxal 5 -phosphate synthase-like subunit PDX1.2 from Arabidopsis thaliana
CryoEM
Release date: Dec. 26, 2018
Resolution: 15.0 Å
EM Method: Single-particle

Novikova IV, Sharma N, Moser T, Sontag R, Liu Y, Collazo MJ, Cascio D, Shokuhfar T, Hellmann H, Knoblauch M, Evans JE

Adv Struct Chem Imaging (2018) 4 pp. 13-13 [ DOI: doi:10.1186/s40679-018-0062-9 Pubmed: 30524935 ]

EMD-4329
Download Map
3D View
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain Map C2
CryoEM
Release date: Dec. 5, 2018
Resolution: 3.1 Å
EM Method: Single-particle

Llacer JL, Hussain T, Saini AK, Nanda JD, Kaur S, Gordiyenko Y, Kumar R, Hinnebusch AG, Lorsch JR, Ramakrishnan V

eLife (2018) 7 [ DOI: doi:10.7554/eLife.39273 Pubmed: 30475211 ]

EMD-4330
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3D View
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain Map A
CryoEM
Release date: Dec. 5, 2018
Resolution: 3.53 Å
EM Method: Single-particle

Llacer JL, Hussain T, Saini AK, Nanda JD, Kaur S, Gordiyenko Y, Kumar R, Hinnebusch AG, Lorsch JR, Ramakrishnan V

eLife (2018) 7 [ DOI: doi:10.7554/eLife.39273 Pubmed: 30475211 ]

EMD-4331
Download Map
3D View
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain Map B
CryoEM
Release date: Dec. 5, 2018
Resolution: 3.5 Å
EM Method: Single-particle

Llacer JL, Hussain T, Saini AK, Nanda JD, Kaur S, Gordiyenko Y, Kumar R, Hinnebusch AG, Lorsch JR, Ramakrishnan V

eLife (2018) 7 [ DOI: doi:10.7554/eLife.39273 Pubmed: 30475211 ]

EMD-9029
Download Map
3D View
Hemagglutinin trimeric ectodomain B/Massachusetts/02/2012 in complex with Fab from IgG CR9114 and single-domain antibody SD84
CryoEM
Release date: Nov. 14, 2018
Resolution: 6.9 Å
EM Method: Single-particle

Laursen NS, Friesen RHE, Zhu X, Jongeneelen M, Blokland S, Vermond J, van Eijgen A, Tang C, van Diepen H, Obmolova G, van der Neut Kolfschoten M, Zuijdgeest D, Straetemans R, Hoffman RMB, Nieusma T, Pallesen J, Turner HL, Bernard SM, Ward AB, Luo J, Poon LLM, Tretiakova AP, Wilson JM, Limberis MP, Vogels R, Brandenburg B, Kolkman JA, Wilson IA

Science (2018) 362 pp. 598-602 [ Pubmed: 30385580 DOI: doi:10.1126/science.aaq0620 ]

EMD-9233
Download Map
3D View
Raw data
EMPIAR-10218
T20S proteasome
CryoEM
Release date: Oct. 31, 2018
Resolution: 2.1 Å
EM Method: Single-particle

Eng ET, Kopylov M, Rice WJ, Carragher BO, Potter CS

To Be Published

EMD-9201
Download Map
3D View
T20S proteasome using Topaz at threshold t-3 with published picks subtracted from Topaz EMPIAR-10025 reprocessing
CryoEM
Release date: Oct. 24, 2018
Resolution: 2.96 Å
EM Method: Single-particle

Bepler T, Morin A, Noble AJ, Brasch J, Shapiro L, Berger B

Res Comput Mol Biol (2018) 10812 pp. 245-247 [ Pubmed: 29707703 ]

EMD-9202
Download Map
3D View
T20S proteasome using with published picks EMPIAR-10025 reprocessing
CryoEM
Release date: Oct. 24, 2018
Resolution: 2.99 Å
EM Method: Single-particle

Bepler T, Morin A, Noble AJ, Brasch J, Shapiro L, Berger B

Res Comput Mol Biol (2018) 10812 pp. 245-247 [ Pubmed: 29707703 ]

EMD-9203
Download Map
3D View
Raw data
EMPIAR-10217
bovine glutamate dehydrogenase 18apr21a
CryoEM
Release date: Oct. 24, 2018
Resolution: 2.1 Å
EM Method: Single-particle

Eng ET, Kopylov M, Negro CJ, Dallaykan S, Jordan KJ, Kelley K, Rice WJ, Carragher BO, Potter CS

To Be Published

Sort by: Download
Showing 1 - 10 of 88. Page 1 of 9
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [88]

Current status

  • REL [88]

Sample type

  • Complex [83]
  • Protein [27]
  • Cellular component [5]
  • DNA [1]
  • Other [1]
  • Tissue [1]
  • Virus [1]

Organism

  • Homo sapiens [40]
  • Human immunodeficiency virus 1 [17]
  • Escherichia coli [12]
  • Synthetic construct [10]
  • Sus scrofa [10]
  • Spinacia oleracea [6]
  • Saccharomyces cerevisiae [5]
  • Thermoplasma acidophilum [3]
  • Kluyveromyces lactis [3]
  • Plasmodium falciparum [3]
  • Gallus gallus [3]
  • Escherichia phage phix174 [2]
  • (no species) [2]
  • Salmonella enterica [2]
  • Thermus thermophilus [2]
  • Influenza b virus [1]
  • Methanothermobacter marburgensis [1]
  • Clostridium tetani [1]
  • Influenza a virus [1]
  • Arabidopsis thaliana [1]
  • Enterobacter cloacae [1]
  • Cafeteria roenbergensis virus [1]
  • Methanothermobacter marburgensis [1]
  • Xenopus laevis [1]
  • Equus caballus [1]
  • Lama glama [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [83]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [36]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [4]
  • ≥ 6Å and < 8Å [11]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [3]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [3]

Model molecular weight

  • 2-5 MDa [1]

Release Date

  • 2018 [48]
  • 2017 [27]
  • 2016 [13]

Author by name

  • Ward AB [17]
  • Wilson IA [16]
  • Ramakrishnan V [13]
  • Urlaub H [13]
  • Berndsen ZT [12]
  • Landais E [12]
  • Rantalainen K [12]
  • Copps J [11]
  • Murrell S [11]
  • Noble AJ [11]
  • Poignard P [11]
  • Torres JL [11]
  • Umotoy J [11]
  • Wu M [11]
  • Cramer P [10]
  • Farnung L [10]
  • Gordiyenko Y [10]
  • Vos SM [10]
  • Cao L [9]
  • Paulson JC [9]
  • Bepler T [8]
  • Berger B [8]
  • Brasch J [8]
  • Brown A [8]
  • Morin A [8]
  • Omorodion O [8]
  • Shapiro L [8]
  • Fernandez IS [7]
  • De Val N [7]
  • Boehning M [6]
  • Forsberg BO [6]
  • Kimanius D [6]
  • Lindahl E [6]
  • Linden A [6]
  • Wigge C [6]
  • Aibara S [5]
  • Amunts A [5]
  • Burton DR [5]
  • Hussain T [5]
  • Llacer JL [5]
  • Pallesen J [5]
  • Paul B [5]
  • Potter CS [5]
  • Berndsens ZB [4]
  • Cottrell CA [4]
  • Moore JP [4]
  • Ozorowski G [4]
  • Rantalainen KR [4]
  • Agafonov DE [3]
  • Algate P [3]
  • Baldassarre M [3]
  • Bertram K [3]
  • Briney B [3]
  • Calderwood DA [3]
  • Cappelletti A [3]
  • Carragher B [3]
  • Chan-hui PY [3]
  • Cupo A [3]
  • Dandey VP [3]
  • Dybkov O [3]
  • Eren K [3]
  • Hinnebusch AG [3]
  • Huehn A [3]
  • Huehn AR [3]
  • Huet-calderwood C [3]
  • Iwamoto DV [3]
  • Karita E [3]
  • Kastner B [3]
  • Kaur S [3]
  • Kumar R [3]
  • Lie Y [3]
  • Lorsch JR [3]
  • Lyumkis D [3]
  • Murrell B [3]
  • Nanda JD [3]
  • Pond SLK [3]
  • Pugach P [3]
  • Radjainia M [3]
  • Ramos A [3]
  • Saini AK [3]
  • Scheres SHW [3]
  • Simon B [3]
  • Sindelar CV [3]
  • Smith D [3]
  • Smith ML [3]
  • Stanfield RL [3]
  • Stark H [3]
  • Tan YZ [3]
  • Vonck J [3]
  • Wei H [3]
  • Wickramasinghe L [3]
  • Will CL [3]
  • Wrin T [3]
  • Zhang Z [3]
  • Abid Ali F [2]
  • Abrescia NGA [2]
  • Albers SV [2]
  • Baerland N [2]
  • Baumeister W [2]
  • Beattie TR [2]

Journal

  • NATURE [24]
  • ELIFE [10]
  • CELL REP [8]
  • NAT COMMUN [8]
  • RES COMPUT MOL BIOL [8]
  • CELL [6]
  • TO BE PUBLISHED [5]
  • NAT STRUCT MOL BIOL [4]
  • IMMUNITY [3]
  • IUCRJ [3]
  • NAT METHODS [3]
  • SCIENCE [3]
  • NAT PLANTS [2]
  • PNAS [2]
  • ADV STRUCT CHEM IMAGING [1]
  • ANGEW CHEM INT ED ENGL [1]
  • EMBO J [1]
  • EMBO REP [1]
  • NAT MICROBIOL [1]
  • SCI ADV [1]
  • SCI REP [1]

Software

  • RELION [59]
  • GCTF [20]
  • CRYOSPARC [14]
  • CTFFIND [13]
  • CTFFIND3 [4]
  • EMAN [1]
  • EMAN2 [1]
  • FREALIGN [1]
  • MOTIONCORR2 [1]

Microscope

  • FEI TITAN KRIOS [57]
  • FEI POLARA 300 [14]
  • FEI TECNAI SPIRIT [6]
  • FEI TECNAI F20 [4]
  • FEI TALOS ARCTICA [2]
  • JEOL 2200FSC [2]
  • FEI/PHILIPS CM300FEG/ST [1]
  • JEOL 3000SFF [1]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [82]
  • LAB6 [6]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [41]
  • FEI FALCON II 4K X 4K [12]
  • GATAN K2 QUANTUM 4K X 4K [11]
  • FEI FALCON III 4K X 4K [7]
  • OTHER [7]
  • TVIPS TEMCAM-F416 4K X 4K [5]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]
  • KODAK SO-163 FILM [1]

External links

  • AlphaFold DB [20]
  • PDBe-Kb [20]
  • UniProt [20]
  • Complex Portal [9]
  • EMPIAR [3]
  • PDB [2]