Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"jp18J11653"

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [24]
  • Ligand [24]
  • Protein [24]

Organism

  • Thermococcus profundus [24]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 0-50 kDa [24]

Release Date

  • 2023 [24]

Author by name

  • Nakasako M [24]
  • Oide M [24]
  • Wakabayashi T [24]
  • Kato T [5]

Author by ORCID

  • Nakasako M [5]

Journal

  • SCI REP [19]
  • FEBS J [5]

Software

  • RELION [24]

Microscope

  • JEOL CRYO ARM 300 [24]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K3 6K X 4K [24]

External links

  • AlphaFold DB [24]
  • ChEBI [24]
  • ChEMBL [24]
  • DrugBank [24]
  • Gene Ontology [24]
  • InterPro [24]
  • PDB [24]
  • PDBe-Kb [24]
  • Pfam [24]
  • UniProt [24]
Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-38249
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the initial stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8xco
Q-score: 0.605

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38250
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8xcp
Q-score: 0.595

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38251
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the initial stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8xcq
Q-score: 0.606

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38252
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADP and GLU in the initial stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8xcr
Q-score: 0.639

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38253
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus in complex with NADPH, AKG and NH4 in the initial stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8xcs
Q-score: 0.638

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38254
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH in the steady stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8xct
Q-score: 0.599

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38255
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADPH, AKG and GLU in the steady stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8xcu
Q-score: 0.581

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38256
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP in the steady stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8xcv
Q-score: 0.598

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38257
Download Map
3D View
Cryo-EM structure of glutamate dehydrogenase from thermococcus profundus incorporating NADPH and AKG in the steady stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8xcw
Q-score: 0.593

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

EMD-38258
Download Map
3D View
Cryo-EM structure of Glutamate dehydrogenase from Thermococcus profundus incorporating NADP and GLU in the steady stage of reaction
Release date: Dec. 27, 2023
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8xcx
Q-score: 0.589

Wakabayashi T, Oide M, Nakasako M

Sci Rep (2024) 14 pp. 11165-11165 [ Pubmed: 38750092 DOI: doi:10.1038/s41598-024-61793-x ]

Sort by: Download
Showing 1 - 10 of 24. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [24]

Current status

  • REL [24]

Sample type

  • Complex [24]
  • Ligand [24]
  • Protein [24]

Organism

  • Thermococcus profundus [24]

EM Method

  • Single-particle [24]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 0-50 kDa [24]

Release Date

  • 2023 [24]

Author by name

  • Nakasako M [24]
  • Oide M [24]
  • Wakabayashi T [24]
  • Kato T [5]

Author by ORCID

  • Nakasako M [5]

Journal

  • SCI REP [19]
  • FEBS J [5]

Software

  • RELION [24]

Microscope

  • JEOL CRYO ARM 300 [24]

Electron Source

  • FIELD EMISSION GUN [24]

Film or detector model

  • GATAN K3 6K X 4K [24]

External links

  • AlphaFold DB [24]
  • ChEBI [24]
  • ChEMBL [24]
  • DrugBank [24]
  • Gene Ontology [24]
  • InterPro [24]
  • PDB [24]
  • PDBe-Kb [24]
  • Pfam [24]
  • UniProt [24]