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grant_code:"ZIA ES103247"

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Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [14]
  • Ligand [8]
  • RNA [6]

Organism

  • Chaetomium thermophilum [6]
  • Severe acute respiratory syndrome coronavirus [5]
  • Synthetic construct [5]
  • Homo sapiens [5]
  • Chaetomium thermophilum [4]
  • Escherichia coli [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]

Release Date

  • 2024 [1]
  • 2023 [2]
  • 2022 [6]
  • 2021 [2]
  • 2019 [4]

Author by name

  • Borgnia MJ [15]
  • Krahn JM [15]
  • Stanley RE [15]
  • Williams JG [12]
  • Deterding LJ [8]
  • Sobhany M [7]
  • Frazier MN [5]
  • Pillon MC [5]
  • Wilson IM [5]
  • Dillard LB [4]
  • Hsu AL [4]
  • Lo YH [4]
  • Perera L [4]
  • Stewart ZD [4]
  • Butay KJ [3]
  • Dandey VP [3]
  • Etigunta SK [3]
  • Goslen KH [3]
  • Kocaman S [3]
  • Petrovich ML [3]
  • Butay KJU [2]
  • Hayne CK [2]
  • Matera AG [2]
  • Petrovitch RM [2]
  • Chapus FL [1]
  • Derose EF [1]
  • Ford BL [1]
  • Gabel SA [1]
  • Gordon J [1]
  • Hissein IS [1]
  • Krahn J [1]
  • Mueller GA [1]
  • Rodriguez J [1]
  • Viverette EG [1]
  • Warren AJ [1]
  • Wright ZM [1]

Author by ORCID

  • Stanley RE [15]
  • Borgnia MJ [8]
  • Williams JG [8]
  • Hsu AL [4]
  • Frazier MN [4]
  • Butay KJU [2]
  • Hayne CK [2]
  • Matera AG [2]
  • Perera L [2]
  • Chapus FL [1]
  • Gordon J [1]
  • Mueller GA [1]
  • Warren AJ [1]
  • Derose EF [1]
  • Ford BL [1]

Journal

  • NAT STRUCT MOL BIOL [5]
  • NUCLEIC ACIDS RES [4]
  • NAT COMMUN [3]
  • PNAS NEXUS [3]
  • BIORXIV [2]

Software

  • CRYOSPARC [3]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TALOS ARCTICA [2]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • InterPro [14]
  • PDB [14]
  • PDBe-Kb [14]
  • Pfam [14]
  • UniProt [14]
  • AlphaFold DB [9]
  • Gene Ontology [9]
  • ChEBI [8]
  • DrugBank [8]
  • ChEMBL [7]
  • Complex Portal [6]
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Showing 1 - 10 of 15. Page 1 of 2
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EMD-44590
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3D View
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA with 1 nucleotide bulge
Release date: Dec. 18, 2024
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9bih
Q-score: 0.266

Wright ZM, Butay KJ, Krahn JM, Wilson IM, Gabel SA, DeRose EF, Hissein IS, Williams JG, Borgnia MJ, Frazier MN, Mueller GA, Stanley RE

Nat Commun (2025) 16 pp. 391-391 [ DOI: doi:10.1038/s41467-024-55682-0 Pubmed: 39755678 ]

EMD-28755
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Human tRNA Splicing Endonuclease Complex bound to 2 F-tRNA-Arg
Release date: May 31, 2023
Resolution: 3.93 Å
EM Method: Single-particle

Hayne CK, Butay KJU, Stewart ZD, Krahn JM, Perera L, Williams JG, Petrovitch RM, Deterding LJ, Matera AG, Borgnia MJ, Stanley RE

Nat Struct Mol Biol (2023) 30 pp. 824-833 [ DOI: doi:10.1038/s41594-023-00991-z Pubmed: 37231153 ]

EMD-26856
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Human tRNA Splicing Endonuclease Complex bound to pre-tRNA-ARG
Release date: Feb. 8, 2023
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 7uxa
Q-score: 0.472

Hayne CK, Butay KJU, Stewart ZD, Krahn JM, Perera L, Williams JG, Petrovitch RM, Deterding LJ, Matera AG, Borgnia MJ, Stanley RE

Nat Struct Mol Biol (2023) 30 pp. 824-833 [ DOI: doi:10.1038/s41594-023-00991-z Pubmed: 37231153 ]

EMD-26831
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Human Rix1 sub-complex scaffold
Release date: Nov. 2, 2022
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7uwf
Q-score: 0.589

Gordon J, Chapus FL, Viverette EG, Williams JG, Deterding LJ, Krahn JM, Borgnia MJ, Rodriguez J, Warren AJ, Stanley RE

Nat Commun (2022) 13 pp. 6783-6783 [ Pubmed: 36351913 DOI: doi:10.1038/s41467-022-34610-0 ]

EMD-25915
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3D View
SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA
Release date: March 23, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tj2
Q-score: 0.459

Frazier MN, Wilson IM, Krahn JM, Butay KJ, Dillard LB, Borgnia MJ, Stanley RE

Nucleic Acids Res (2022) 50 pp. 8290-8301 [ Pubmed: 35801916 DOI: doi:10.1093/nar/gkac589 ]

EMD-26073
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SARS-CoV-2 endoribonuclease Nsp15 bound to dsRNA
Release date: March 23, 2022
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7tqv
Q-score: 0.387

Frazier MN, Wilson IM, Krahn JM, Butay KJ, Dillard LB, Borgnia MJ, Stanley RE

Nucleic Acids Res (2022) 50 pp. 8290-8301 [ Pubmed: 35801916 DOI: doi:10.1093/nar/gkac589 ]

EMD-25474
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CryoEM structure of the N-Terminal deleted Rix7 AAA-ATPase
Release date: March 2, 2022
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7swl
Q-score: 0.546

Kocaman S, Lo YH, Krahn JM, Sobhany M, Dandey VP, Petrovich ML, Etigunta SK, Williams JG, Deterding LJ, Borgnia MJ, Stanley RE

Pnas Nexus (2022) 1 pp. pgac118-pgac118 [ DOI: doi:10.1093/pnasnexus/pgac118 Pubmed: 36090660 ]

EMD-25582
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CryoEM structure of the crosslinked Rix7 AAA-ATPase
Release date: March 2, 2022
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7t0v
Q-score: 0.381

Kocaman S, Lo YH, Krahn JM, Sobhany M, Dandey VP, Petrovich ML, Etigunta SK, Williams JG, Deterding LJ, Borgnia MJ, Stanley RE

Pnas Nexus (2022) 1 pp. pgac118-pgac118 [ DOI: doi:10.1093/pnasnexus/pgac118 Pubmed: 36090660 ]

EMD-25659
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CryoEM structure of the Rix7 D2 Walker B mutant
Release date: March 2, 2022
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7t3i
Q-score: 0.38

Kocaman S, Lo YH, Krahn JM, Sobhany M, Dandey VP, Petrovich ML, Etigunta SK, Williams JG, Deterding LJ, Borgnia MJ, Stanley RE

Pnas Nexus (2022) 1 pp. pgac118-pgac118 [ DOI: doi:10.1093/pnasnexus/pgac118 Pubmed: 36090660 ]

EMD-24137
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3D View
SARS-CoV-2 Nsp15 endoribonuclease pre-cleavage state
Release date: June 9, 2021
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7n33
Q-score: 0.606

Frazier MN, Dillard LB, Krahn JM, Perera L, Williams JG, Wilson IM, Stewart ZD, Pillon MC, Deterding LJ, Borgnia MJ, Stanley RE

Nucleic Acids Res (2021) 49 pp. 10136-10149 [ Pubmed: 34403466 DOI: doi:10.1093/nar/gkab719 ]

Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [14]
  • Ligand [8]
  • RNA [6]

Organism

  • Chaetomium thermophilum [6]
  • Severe acute respiratory syndrome coronavirus [5]
  • Synthetic construct [5]
  • Homo sapiens [5]
  • Chaetomium thermophilum [4]
  • Escherichia coli [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [8]
  • ≥ 4Å and < 5Å [2]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]

Release Date

  • 2024 [1]
  • 2023 [2]
  • 2022 [6]
  • 2021 [2]
  • 2019 [4]

Author by name

  • Borgnia MJ [15]
  • Krahn JM [15]
  • Stanley RE [15]
  • Williams JG [12]
  • Deterding LJ [8]
  • Sobhany M [7]
  • Frazier MN [5]
  • Pillon MC [5]
  • Wilson IM [5]
  • Dillard LB [4]
  • Hsu AL [4]
  • Lo YH [4]
  • Perera L [4]
  • Stewart ZD [4]
  • Butay KJ [3]
  • Dandey VP [3]
  • Etigunta SK [3]
  • Goslen KH [3]
  • Kocaman S [3]
  • Petrovich ML [3]
  • Butay KJU [2]
  • Hayne CK [2]
  • Matera AG [2]
  • Petrovitch RM [2]
  • Chapus FL [1]
  • Derose EF [1]
  • Ford BL [1]
  • Gabel SA [1]
  • Gordon J [1]
  • Hissein IS [1]
  • Krahn J [1]
  • Mueller GA [1]
  • Rodriguez J [1]
  • Viverette EG [1]
  • Warren AJ [1]
  • Wright ZM [1]

Author by ORCID

  • Stanley RE [15]
  • Borgnia MJ [8]
  • Williams JG [8]
  • Hsu AL [4]
  • Frazier MN [4]
  • Butay KJU [2]
  • Hayne CK [2]
  • Matera AG [2]
  • Perera L [2]
  • Chapus FL [1]
  • Gordon J [1]
  • Mueller GA [1]
  • Warren AJ [1]
  • Derose EF [1]
  • Ford BL [1]

Journal

  • NAT STRUCT MOL BIOL [5]
  • NUCLEIC ACIDS RES [4]
  • NAT COMMUN [3]
  • PNAS NEXUS [3]
  • BIORXIV [2]

Software

  • CRYOSPARC [3]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TALOS ARCTICA [2]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • InterPro [14]
  • PDB [14]
  • PDBe-Kb [14]
  • Pfam [14]
  • UniProt [14]
  • AlphaFold DB [9]
  • Gene Ontology [9]
  • ChEBI [8]
  • DrugBank [8]
  • ChEMBL [7]
  • Complex Portal [6]