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grant_code:"XDB27020106"

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Current Database

  • EMDB [22]

Current status

  • REL [22]

Sample type

  • Complex [22]
  • Ligand [17]
  • Protein [17]

Organism

  • Chlamydomonas reinhardtii [10]
  • Physcomitrium patens [5]
  • Arabidopsis thaliana [3]
  • Thermosynechococcus elongatus [2]
  • Cereibacter sphaeroides [2]

EM Method

  • Single-particle [22]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [14]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [4]

Release Date

  • 2023 [5]
  • 2022 [5]
  • 2021 [6]
  • 2020 [2]
  • 2019 [2]
  • 2018 [2]

Author by name

  • Li M [20]
  • Pan X [18]
  • Pan XW [14]
  • Liu Z [13]
  • Li A [8]
  • Minagawa J [8]
  • Murata K [8]
  • Song C [8]
  • Li AJ [7]
  • Su X [7]
  • Zhang X [7]
  • Takizawa K [6]
  • Tokutsu R [6]
  • Yamasaki T [6]
  • Cao D [5]
  • Shang H [5]
  • Sun H [5]
  • Sun HY [5]
  • Bassi R [3]
  • Dall Osto L [3]
  • Shi L [3]
  • Bracun L [2]
  • Canniffe DP [2]
  • Cao P [2]
  • Chang W [2]
  • Christianson BM [2]
  • Kim E [2]
  • Liu LN [2]
  • Ma J [2]
  • Mi H [2]
  • Negami T [2]
  • Sheng X [2]
  • Shirouzu M [2]
  • Song D [2]
  • Terada T [2]
  • Watanabe A [2]
  • Xie F [2]
  • Xu F [2]
  • Yamagata A [2]
  • Zhao X [2]
  • Zou B [2]
  • Zhang Z [1]

Author by ORCID

  • Li M [20]
  • Pan X [13]
  • Liu Z [8]
  • Song C [8]
  • Murata K [8]
  • Minagawa J [8]
  • Yamasaki T [6]
  • Takizawa K [6]
  • Tokutsu R [6]
  • Zhang X [4]
  • Dall'osto L [3]
  • Watanabe A [2]
  • Bracun L [2]
  • Yamagata A [2]
  • Li A [2]
  • Cao D [2]
  • Ma J [2]
  • Canniffe DP [2]
  • Terada T [2]
  • Shirouzu M [2]
  • Liu LN [2]
  • Kim E [2]

Journal

  • NAT PLANTS [15]
  • NAT COMMUN [4]
  • MOL PLANT [3]
  • TO BE PUBLISHED [1]

Software

  • RELION [2]

Microscope

  • FEI TITAN KRIOS [15]
  • FEI TALOS ARCTICA [7]

Electron Source

  • FIELD EMISSION GUN [17]
  • OTHER [5]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [21]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [17]
  • ChEBI [17]
  • Gene Ontology [17]
  • InterPro [17]
  • PDB [17]
  • PDBe-Kb [17]
  • Pfam [17]
  • UniProt [17]
  • DrugBank [15]
  • ChEMBL [12]
  • SCOP2 [8]
  • CATH [2]
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Showing 1 - 10 of 22. Page 1 of 3
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EMD-35026
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3D View
PpPSI-L overall map
Release date: Aug. 2, 2023
Resolution: 2.87 Å
EM Method: Single-particle

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) 9 pp. 1347-1358 [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

EMD-35027
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Small Photosystem I moiety of Large Photosystem I from Physcomitrium patens
Release date: Aug. 2, 2023
Resolution: 2.82 Å
EM Method: Single-particle

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

EMD-35028
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LHCII moiety of Large Photosystem I from Physcomitrium patens
Release date: Aug. 2, 2023
Resolution: 3.05 Å
EM Method: Single-particle

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

EMD-35033
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OutLHCIs plus Lhcb9 moiety of Large Photosystem I from Physcomitrium patens
Release date: Aug. 2, 2023
Resolution: 3.29 Å
EM Method: Single-particle

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

EMD-35034
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Outer LHCIs plus Lhcb9 moiety of Large Photosystem I from Physcomitrium patens processing with DeepEMhancer
Release date: Aug. 2, 2023
Resolution: 3.3 Å
EM Method: Single-particle

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

EMD-32058
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The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-1
Release date: April 27, 2022
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7vor
Q-score: 0.573

Cao P, Bracun L, Yamagata A, Christianson BM, Negami T, Zou B, Terada T, Canniffe DP, Shirouzu M, Li M, Liu LN

Nat Commun (2022) 13 pp. 1977-1977 [ Pubmed: 35418573 DOI: doi:10.1038/s41467-022-29563-3 ]

EMD-32059
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The structure of dimeric photosynthetic RC-LH1 supercomplex in Class-2
Release date: April 27, 2022
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7vot
Q-score: 0.542

Cao P, Bracun L, Yamagata A, Christianson BM, Negami T, Zou B, Terada T, Canniffe DP, Shirouzu M, Li M, Liu LN

Nat Commun (2022) 13 pp. 1977-1977 [ Pubmed: 35418573 DOI: doi:10.1038/s41467-022-29563-3 ]

EMD-32463
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Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis
Release date: March 16, 2022
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7wfe
Q-score: 0.508

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

EMD-32464
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Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Release date: March 16, 2022
Resolution: 3.59 Å
EM Method: Single-particle
Fitted PDBs: 7wff
Q-score: 0.442

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

EMD-32465
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3D View
Subcomplexes A and E in NDH complex from Arabidopsis
Release date: March 16, 2022
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232

Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M

Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]

Sort by: Download
Showing 1 - 10 of 22. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [22]

Current status

  • REL [22]

Sample type

  • Complex [22]
  • Ligand [17]
  • Protein [17]

Organism

  • Chlamydomonas reinhardtii [10]
  • Physcomitrium patens [5]
  • Arabidopsis thaliana [3]
  • Thermosynechococcus elongatus [2]
  • Cereibacter sphaeroides [2]

EM Method

  • Single-particle [22]

Resolution

  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [14]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [4]

Release Date

  • 2023 [5]
  • 2022 [5]
  • 2021 [6]
  • 2020 [2]
  • 2019 [2]
  • 2018 [2]

Author by name

  • Li M [20]
  • Pan X [18]
  • Pan XW [14]
  • Liu Z [13]
  • Li A [8]
  • Minagawa J [8]
  • Murata K [8]
  • Song C [8]
  • Li AJ [7]
  • Su X [7]
  • Zhang X [7]
  • Takizawa K [6]
  • Tokutsu R [6]
  • Yamasaki T [6]
  • Cao D [5]
  • Shang H [5]
  • Sun H [5]
  • Sun HY [5]
  • Bassi R [3]
  • Dall Osto L [3]
  • Shi L [3]
  • Bracun L [2]
  • Canniffe DP [2]
  • Cao P [2]
  • Chang W [2]
  • Christianson BM [2]
  • Kim E [2]
  • Liu LN [2]
  • Ma J [2]
  • Mi H [2]
  • Negami T [2]
  • Sheng X [2]
  • Shirouzu M [2]
  • Song D [2]
  • Terada T [2]
  • Watanabe A [2]
  • Xie F [2]
  • Xu F [2]
  • Yamagata A [2]
  • Zhao X [2]
  • Zou B [2]
  • Zhang Z [1]

Author by ORCID

  • Li M [20]
  • Pan X [13]
  • Liu Z [8]
  • Song C [8]
  • Murata K [8]
  • Minagawa J [8]
  • Yamasaki T [6]
  • Takizawa K [6]
  • Tokutsu R [6]
  • Zhang X [4]
  • Dall'osto L [3]
  • Watanabe A [2]
  • Bracun L [2]
  • Yamagata A [2]
  • Li A [2]
  • Cao D [2]
  • Ma J [2]
  • Canniffe DP [2]
  • Terada T [2]
  • Shirouzu M [2]
  • Liu LN [2]
  • Kim E [2]

Journal

  • NAT PLANTS [15]
  • NAT COMMUN [4]
  • MOL PLANT [3]
  • TO BE PUBLISHED [1]

Software

  • RELION [2]

Microscope

  • FEI TITAN KRIOS [15]
  • FEI TALOS ARCTICA [7]

Electron Source

  • FIELD EMISSION GUN [17]
  • OTHER [5]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [21]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [17]
  • ChEBI [17]
  • Gene Ontology [17]
  • InterPro [17]
  • PDB [17]
  • PDBe-Kb [17]
  • Pfam [17]
  • UniProt [17]
  • DrugBank [15]
  • ChEMBL [12]
  • SCOP2 [8]
  • CATH [2]