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grant_code:"XDB08020100"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • RNA [7]
  • Ligand [1]

Organism

  • Influenza d virus [8]
  • Synthetic construct [7]
  • Severe acute respiratory syndrome coronavirus [2]
  • (no species) [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [9]

Release Date

  • 2019 [8]
  • 2017 [2]
  • 2016 [1]

Author by name

  • Gao GF [11]
  • Shi Y [11]
  • Qi J [10]
  • Yan J [10]
  • Zhang X [10]
  • Wang P [9]
  • Chen Y [8]
  • Deng T [8]
  • Han M [8]
  • Liu S [8]
  • Liu Y [8]
  • Peng Q [8]
  • Peng R [8]
  • Song H [8]
  • Wang M [8]
  • Yang W [8]
  • Zhang B [8]
  • Cao D [2]
  • Lu G [2]
  • Ma J [2]
  • Wang Q [2]
  • Wu Y [2]
  • Yuan Y [2]
  • Zhang Y [2]
  • Cao P [1]
  • Gao F [1]
  • Gong X [1]
  • Huang W [1]
  • Qian H [1]
  • Qiang HW [1]
  • Wan T [1]
  • Wang X [1]
  • Wu J [1]
  • Wu JP [1]
  • Yan N [1]
  • Zhao X [1]
  • Zhou Q [1]
  • Zhou X [1]
  • Zhou XH [1]

Author by ORCID

  • Zhang X [8]
  • Peng R [8]
  • Song H [8]
  • Shi Y [8]
  • Gao GF [8]
  • Yan J [8]
  • Cao D [2]
  • Ma J [2]
  • Qian H [1]
  • Wan T [1]
  • Gong X [1]

Journal

  • NAT MICROBIOL [8]
  • NAT COMMUN [2]
  • CELL [1]

Software

  • RELION [9]
  • CTFFIND [8]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • PDB [11]
  • Gene Ontology [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • Complex Portal [3]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-9577
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3D View
structure of influenza D virus apo polymerase
Release date: June 12, 2019
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6kv5
Q-score: 0.213

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9578
Download Map
3D View
Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation class A1
Release date: June 12, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6kuk
Q-score: 0.403

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9579
Download Map
3D View
Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation Class A2
Release date: June 12, 2019
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6kup
Q-score: 0.326

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9580
Download Map
3D View
structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation Class B2
Release date: June 12, 2019
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6kut
Q-score: 0.358

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9581
Download Map
3D View
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation Class B1
Release date: June 12, 2019
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6kur
Q-score: 0.42

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9582
Download Map
3D View
Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation Class B3
Release date: June 12, 2019
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6abg

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) 4 pp. 1750-1759 [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9887
Download Map
3D View
Structure of influenza D virus polymerase bound to cRNA promoter in class 1
Release date: June 12, 2019
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 6kuj
Q-score: 0.481

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-9888
Download Map
3D View
Structure of influenza D virus polymerase bound to cRNA promoter in class 2
Release date: June 12, 2019
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6kuv
Q-score: 0.341

Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y

Nat Microbiol (2019) [ DOI: doi:10.1038/s41564-019-0487-5 Pubmed: 31209309 ]

EMD-6703
Download Map
3D View
Prefusion structure of SARS-CoV spike glycoprotein, conformation 1
Release date: May 3, 2017
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5x58
Q-score: 0.409

Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

Nat Commun (2017) 8 pp. 15092-15092 [ Pubmed: 28393837 DOI: doi:10.1038/ncomms15092 ]

EMD-6705
Download Map
3D View
Prefusion structure of SARS-CoV spike glycoprotein, conformation 2
Release date: May 3, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5x5b
Q-score: 0.333

Yuan Y, Cao D, Zhang Y, Ma J, Qi J, Wang Q, Lu G, Wu Y, Yan J, Shi Y, Zhang X, Gao GF

Nat Commun (2017) 8 pp. 15092-15092 [ Pubmed: 28393837 DOI: doi:10.1038/ncomms15092 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • RNA [7]
  • Ligand [1]

Organism

  • Influenza d virus [8]
  • Synthetic construct [7]
  • Severe acute respiratory syndrome coronavirus [2]
  • (no species) [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [9]

Release Date

  • 2019 [8]
  • 2017 [2]
  • 2016 [1]

Author by name

  • Gao GF [11]
  • Shi Y [11]
  • Qi J [10]
  • Yan J [10]
  • Zhang X [10]
  • Wang P [9]
  • Chen Y [8]
  • Deng T [8]
  • Han M [8]
  • Liu S [8]
  • Liu Y [8]
  • Peng Q [8]
  • Peng R [8]
  • Song H [8]
  • Wang M [8]
  • Yang W [8]
  • Zhang B [8]
  • Cao D [2]
  • Lu G [2]
  • Ma J [2]
  • Wang Q [2]
  • Wu Y [2]
  • Yuan Y [2]
  • Zhang Y [2]
  • Cao P [1]
  • Gao F [1]
  • Gong X [1]
  • Huang W [1]
  • Qian H [1]
  • Qiang HW [1]
  • Wan T [1]
  • Wang X [1]
  • Wu J [1]
  • Wu JP [1]
  • Yan N [1]
  • Zhao X [1]
  • Zhou Q [1]
  • Zhou X [1]
  • Zhou XH [1]

Author by ORCID

  • Zhang X [8]
  • Peng R [8]
  • Song H [8]
  • Shi Y [8]
  • Gao GF [8]
  • Yan J [8]
  • Cao D [2]
  • Ma J [2]
  • Qian H [1]
  • Wan T [1]
  • Gong X [1]

Journal

  • NAT MICROBIOL [8]
  • NAT COMMUN [2]
  • CELL [1]

Software

  • RELION [9]
  • CTFFIND [8]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [11]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • PDB [11]
  • Gene Ontology [10]
  • InterPro [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • Complex Portal [3]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]