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grant_code:"UOC1506"

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Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [6]
  • Ligand [4]
  • DNA [2]

Organism

  • Synthetic construct [4]
  • Helicobacter pylori [2]
  • Photobacterium profundum [2]
  • Escherichia coli [2]
  • Haemophilus influenzae [2]
  • Photobacterium profundum [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2023 [3]
  • 2022 [1]
  • 2021 [2]

Author by name

  • Dobson RCJ [6]
  • Friemann R [6]
  • North RA [6]
  • Abeysekera GS [4]
  • Allison JR [4]
  • Currie MJ [4]
  • Davies JS [4]
  • Demeler B [4]
  • Drew D [4]
  • Griffin MDW [4]
  • Gulati A [4]
  • Indiveri C [4]
  • Mace PD [4]
  • Newton-vesty MC [4]
  • Scalise M [4]
  • Wakatsuki S [4]
  • Wright JD [4]
  • Brookes E [2]
  • Copping JM [2]
  • Currie MC [2]
  • Hariprasad V [2]
  • Henrickson A [2]
  • Horne C [2]
  • Horne CR [2]
  • Jamieson SA [2]
  • Morado DR [2]
  • Murphy JM [2]
  • Panjikar S [2]
  • Ramaswamy S [2]
  • Ramm G [2]
  • Remus DM [2]
  • Subramanian R [2]
  • Venugopal H [2]
  • Wahlgren WY [2]
  • Wood DM [2]
  • Morado D [1]

Author by ORCID

  • North RA [6]
  • Dobson RCJ [6]
  • Wakatsuki S [4]
  • Currie MJ [4]
  • Mace PD [4]
  • Wright JD [4]
  • Davies JS [4]
  • Panjikar S [2]
  • Drew D [2]
  • Griffin MDW [2]
  • Demeler B [2]
  • Copping JM [2]
  • Friemann R [2]
  • Allison JR [2]
  • Ramaswamy S [2]
  • Wood DM [2]
  • Jamieson SA [2]
  • Murphy JM [2]
  • Wahlgren WY [2]
  • Gulati A [2]
  • Horne CR [2]
  • Henrickson A [2]
  • Ramm G [2]
  • Scalise M [2]
  • Morado DR [2]

Journal

  • NAT COMMUN [4]
  • ELIFE [2]

Software

  • RELION [1]

Microscope

  • FEI TITAN KRIOS [4]
  • TFS KRIOS [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • AlphaFold DB [6]
  • PDB [6]
  • UniProt [6]
  • ChEBI [4]
  • DrugBank [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • ChEMBL [1]
  • EMPIAR [1]
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Showing 1 - 6 of 6. Page 1 of 1
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EMD-41265
Download Map
3D View
Cryo-EM structure of the Tripartite ATP-independent Periplasmic TRAP transporter SiaQM from Haemophilus influenzae parallel dimer
Release date: Nov. 22, 2023
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8thi
Q-score: 0.411

Currie MJ, Davies JS, Scalise M, Gulati A, Wright JD, Newton-Vesty MC, Abeysekera GS, Subramanian R, Wahlgren WY, Friemann R, Allison JR, Mace PD, Griffin MDW, Demeler B, Wakatsuki S, Drew D, Indiveri C, Dobson RCJ, North RA

eLife (2024) 12 [ Pubmed: 38349818 DOI: doi:10.7554/eLife.92307 ]

EMD-41266
Download Map
3D View
Cryo-EM structure of the Tripartite ATP-independent Periplasmic TRAP transporter SiaQM from Haemophilus influenzae antiparallel dimer
Release date: Nov. 22, 2023
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8thj
Q-score: 0.52

Currie MJ, Davies JS, Scalise M, Gulati A, Wright JD, Newton-Vesty MC, Abeysekera GS, Subramanian R, Wahlgren WY, Friemann R, Allison JR, Mace PD, Griffin MDW, Demeler B, Wakatsuki S, Drew D, Indiveri C, Dobson RCJ, North RA

eLife (2024) 12 [ Pubmed: 38349818 DOI: doi:10.7554/eLife.92307 ]

EMD-15775
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3D View
Cryo-EM structure of the Tripartite ATP-independent Periplasmic TRAP transporter SiaQM from Photobacterium profundum in a nanodisc
Release date: March 15, 2023
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8b01
Q-score: 0.539

Davies JS, Currie MJ, North RA, Scalise M, Wright JD, Copping JM, Remus DM, Gulati A, Morado DR, Jamieson SA, Newton-Vesty MC, Abeysekera GS, Ramaswamy S, Friemann R, Wakatsuki S, Allison JR, Indiveri C, Drew D, Mace PD, Dobson RCJ

Nat Commun (2023) 14 pp. 1120-1120 [ DOI: doi:10.1038/s41467-023-36590-1 Pubmed: 36849793 ]

EMD-13968
Download Map
3D View
Cryo-EM structure of the Tripartite ATP-independent Periplasmic TRAP transporter SiaQM from Photobacterium profundum in amphipol
Release date: Dec. 21, 2022
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7qha
Q-score: 0.48

Davies JS, Currie MJ, North RA, Scalise M, Wright JD, Copping JM, Remus DM, Gulati A, Morado DR, Jamieson SA, Newton-Vesty MC, Abeysekera GS, Ramaswamy S, Friemann R, Wakatsuki S, Allison JR, Indiveri C, Drew D, Mace PD, Dobson RCJ

Nat Commun (2023) 14 pp. 1120-1120 [ DOI: doi:10.1038/s41467-023-36590-1 Pubmed: 36849793 ]

EMD-21652
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3D View
Raw data
EMPIAR-10836
NanR dimer-DNA hetero-complex
Release date: March 10, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6wfq
Q-score: 0.256

Horne CR, Venugopal H, Panjikar S, Wood DM, Henrickson A, Brookes E, North RA, Murphy JM, Friemann R, Griffin MDW, Ramm G, Demeler B, Dobson RCJ

Nat Commun (2021) 12 pp. 1988-1988 [ Pubmed: 33790291 DOI: doi:10.1038/s41467-021-22253-6 ]

EMD-21661
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3D View
Hexameric NanR-DNA hetero-complex
Release date: March 10, 2021
Resolution: 8.3 Å
EM Method: Single-particle
Fitted PDBs: 6wg7
Q-score: 0.062

Horne CR, Venugopal H, Panjikar S, Wood DM, Henrickson A, Brookes E, North RA, Murphy JM, Friemann R, Griffin MDW, Ramm G, Demeler B, Dobson RCJ

Nat Commun (2021) 12 pp. 1988-1988 [ Pubmed: 33790291 DOI: doi:10.1038/s41467-021-22253-6 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Protein [6]
  • Ligand [4]
  • DNA [2]

Organism

  • Synthetic construct [4]
  • Helicobacter pylori [2]
  • Photobacterium profundum [2]
  • Escherichia coli [2]
  • Haemophilus influenzae [2]
  • Photobacterium profundum [2]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]

Release Date

  • 2023 [3]
  • 2022 [1]
  • 2021 [2]

Author by name

  • Dobson RCJ [6]
  • Friemann R [6]
  • North RA [6]
  • Abeysekera GS [4]
  • Allison JR [4]
  • Currie MJ [4]
  • Davies JS [4]
  • Demeler B [4]
  • Drew D [4]
  • Griffin MDW [4]
  • Gulati A [4]
  • Indiveri C [4]
  • Mace PD [4]
  • Newton-vesty MC [4]
  • Scalise M [4]
  • Wakatsuki S [4]
  • Wright JD [4]
  • Brookes E [2]
  • Copping JM [2]
  • Currie MC [2]
  • Hariprasad V [2]
  • Henrickson A [2]
  • Horne C [2]
  • Horne CR [2]
  • Jamieson SA [2]
  • Morado DR [2]
  • Murphy JM [2]
  • Panjikar S [2]
  • Ramaswamy S [2]
  • Ramm G [2]
  • Remus DM [2]
  • Subramanian R [2]
  • Venugopal H [2]
  • Wahlgren WY [2]
  • Wood DM [2]
  • Morado D [1]

Author by ORCID

  • North RA [6]
  • Dobson RCJ [6]
  • Wakatsuki S [4]
  • Currie MJ [4]
  • Mace PD [4]
  • Wright JD [4]
  • Davies JS [4]
  • Panjikar S [2]
  • Drew D [2]
  • Griffin MDW [2]
  • Demeler B [2]
  • Copping JM [2]
  • Friemann R [2]
  • Allison JR [2]
  • Ramaswamy S [2]
  • Wood DM [2]
  • Jamieson SA [2]
  • Murphy JM [2]
  • Wahlgren WY [2]
  • Gulati A [2]
  • Horne CR [2]
  • Henrickson A [2]
  • Ramm G [2]
  • Scalise M [2]
  • Morado DR [2]

Journal

  • NAT COMMUN [4]
  • ELIFE [2]

Software

  • RELION [1]

Microscope

  • FEI TITAN KRIOS [4]
  • TFS KRIOS [1]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • AlphaFold DB [6]
  • PDB [6]
  • UniProt [6]
  • ChEBI [4]
  • DrugBank [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • ChEMBL [1]
  • EMPIAR [1]