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grant_code:"TEAM TECH CORE FACILITY/2017-4/6"

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Complex [18]
  • Protein [17]
  • Ligand [7]

Organism

  • Trypanosoma cruzi [9]
  • Spinacia oleracea [6]
  • Trypanosoma cruzi [4]
  • Escherichia coli [2]
  • Trypanosoma cruzi [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [18]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [10]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [8]

Release Date

  • 2025 [1]
  • 2024 [12]
  • 2023 [3]
  • 2021 [2]

Author by name

  • Dubin G [9]
  • Jemiola-rzeminska M [9]
  • Lipinski O [9]
  • Patel SN [9]
  • Sonani RR [9]
  • Sood T [9]
  • Artur B [7]
  • Blat A [7]
  • Glatt S [7]
  • Rawski M [7]
  • Indyka P [6]
  • Jaciuk M [6]
  • Koziej L [6]
  • Mielecki B [6]
  • Osyczka A [6]
  • Pietras R [6]
  • Pintscher S [6]
  • Szwalec M [6]
  • Sarewicz M [3]
  • Wazny G [3]
  • Wojcik-augustyn A [3]
  • Beis K [2]
  • Ghilarov D [2]
  • Heddle JG [2]
  • Inaba-inoue S [2]
  • Iwata S [2]
  • Michalczyk E [2]
  • Nomura N [2]
  • Ogasawara S [2]
  • Pakosz Z [2]
  • Qu F [2]
  • Rebuffat S [2]
  • Stepien P [2]
  • Walker GC [2]
  • Bange G [1]
  • Biela A [1]
  • Biela AP [1]
  • Grudnik P [1]
  • Steinchen W [1]
  • Wator E [1]
  • Wilk P [1]
  • Zak KM [1]

Author by ORCID

  • Rawski M [7]
  • Glatt S [7]
  • Pintscher S [6]
  • Pietras R [6]
  • Osyczka A [6]
  • Szwalec M [6]
  • Mielecki B [6]
  • Indyka P [6]
  • Jaciuk M [6]
  • Koziej L [6]
  • Sarewicz M [3]
  • Wojcik-augustyn A [3]
  • Beis K [2]
  • Ogasawara S [2]
  • Qu F [2]
  • Ghilarov D [2]
  • Pakosz Z [2]
  • Stepien P [2]
  • Rebuffat S [2]
  • Nomura N [2]
  • Inaba-inoue S [2]
  • Michalczyk E [2]
  • Heddle JG [2]
  • Iwata S [2]
  • Zak KM [1]
  • Biela A [1]
  • Wilk P [1]
  • Grudnik P [1]
  • Bange G [1]
  • Wator E [1]

Journal

  • BIORXIV [7]
  • SCI ADV [5]
  • NAT PLANTS [3]
  • TO BE PUBLISHED [2]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [9]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [12]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [14]
  • PDB [14]
  • PDBe-Kb [14]
  • Pfam [14]
  • UniProt [14]
  • Gene Ontology [13]
  • InterPro [13]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • EMPIAR [6]
Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
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EMD-55898
Download Map
3D View
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Release date: Dec. 17, 2025
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9tgg
Q-score: 0.497

Sarewicz M, Szwalec M, Pintscher S, Indyka P, Rawski M, Pietras R, Mielecki B, Koziej L, Jaciuk M, Glatt S, Osyczka A

Sci Adv (2023) 9 pp. eadd9688- [ Pubmed: 36638176 DOI: doi:10.1126/sciadv.add9688 ]

EMD-19938
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3D View
Raw data
EMPIAR-12144
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Release date: Oct. 16, 2024
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9es7
Q-score: 0.682

Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

Nat Plants (2024) 10 pp. 1814-1825 [ Pubmed: 39362993 DOI: doi:10.1038/s41477-024-01804-x ]

EMD-19939
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3D View
Raw data
EMPIAR-12158
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Release date: Oct. 16, 2024
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 9es8
Q-score: 0.626

Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

Nat Plants (2024) 10 pp. 1814-1825 [ Pubmed: 39362993 DOI: doi:10.1038/s41477-024-01804-x ]

EMD-19940
Download Map
3D View
Raw data
EMPIAR-12149
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Release date: Oct. 16, 2024
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 9es9
Q-score: 0.618

Pintscher S, Pietras R, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

Nat Plants (2024) 10 pp. 1814-1825 [ Pubmed: 39362993 DOI: doi:10.1038/s41477-024-01804-x ]

EMD-50339
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3D View
Cryo-EM structure of Trypanosoma cruzi glycosomal malate dehydrogenase
Release date: May 29, 2024
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9fee
Q-score: 0.567

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2024) [ DOI: doi:10.1101/2023.04.03.535445 ]

EMD-50340
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3D View
Cryo-EM structure of Trypanosoma cruzi MDH 4-PEX5 complex
Release date: May 29, 2024
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9fef
Q-score: 0.522

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2024) [ DOI: doi:10.1101/2023.04.03.535445 ]

EMD-40003
Download Map
3D View
Structure of Trypanosoma MDH 4-Pex5, close conformation
Release date: March 27, 2024
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8ggd
Q-score: 0.485

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2023) [ DOI: doi:10.1101/2023.04.03.535445 ]

EMD-40008
Download Map
3D View
Structure of Trypanosoma MDH 4-PEX5, distal conformation
Release date: March 27, 2024
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8ggh
Q-score: 0.485

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2023) [ DOI: doi:10.1101/2023.04.03.535445 ]

EMD-40031
Download Map
3D View
Structure of Trypanosoma MDH 4- Pex5 2, close conformation
Release date: March 27, 2024
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 8gh2
Q-score: 0.407

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2023) [ DOI: doi:10.1101/2023.04.03.535445 ]

EMD-40032
Download Map
3D View
Structure of Trypanosoma MDH 4- Pex5 2, distal conformation
Release date: March 27, 2024
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8gh3
Q-score: 0.398

Sonani RR, Blat A, Jemiola-Rzeminska M, Lipinski O, Patel SN, Sood T, Dubin G

bioRxiv (2023) [ DOI: doi:10.1101/2023.04.03.535445 ]

Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Complex [18]
  • Protein [17]
  • Ligand [7]

Organism

  • Trypanosoma cruzi [9]
  • Spinacia oleracea [6]
  • Trypanosoma cruzi [4]
  • Escherichia coli [2]
  • Trypanosoma cruzi [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [18]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [7]
  • ≥ 3Å and < 4Å [10]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [8]

Release Date

  • 2025 [1]
  • 2024 [12]
  • 2023 [3]
  • 2021 [2]

Author by name

  • Dubin G [9]
  • Jemiola-rzeminska M [9]
  • Lipinski O [9]
  • Patel SN [9]
  • Sonani RR [9]
  • Sood T [9]
  • Artur B [7]
  • Blat A [7]
  • Glatt S [7]
  • Rawski M [7]
  • Indyka P [6]
  • Jaciuk M [6]
  • Koziej L [6]
  • Mielecki B [6]
  • Osyczka A [6]
  • Pietras R [6]
  • Pintscher S [6]
  • Szwalec M [6]
  • Sarewicz M [3]
  • Wazny G [3]
  • Wojcik-augustyn A [3]
  • Beis K [2]
  • Ghilarov D [2]
  • Heddle JG [2]
  • Inaba-inoue S [2]
  • Iwata S [2]
  • Michalczyk E [2]
  • Nomura N [2]
  • Ogasawara S [2]
  • Pakosz Z [2]
  • Qu F [2]
  • Rebuffat S [2]
  • Stepien P [2]
  • Walker GC [2]
  • Bange G [1]
  • Biela A [1]
  • Biela AP [1]
  • Grudnik P [1]
  • Steinchen W [1]
  • Wator E [1]
  • Wilk P [1]
  • Zak KM [1]

Author by ORCID

  • Rawski M [7]
  • Glatt S [7]
  • Pintscher S [6]
  • Pietras R [6]
  • Osyczka A [6]
  • Szwalec M [6]
  • Mielecki B [6]
  • Indyka P [6]
  • Jaciuk M [6]
  • Koziej L [6]
  • Sarewicz M [3]
  • Wojcik-augustyn A [3]
  • Beis K [2]
  • Ogasawara S [2]
  • Qu F [2]
  • Ghilarov D [2]
  • Pakosz Z [2]
  • Stepien P [2]
  • Rebuffat S [2]
  • Nomura N [2]
  • Inaba-inoue S [2]
  • Michalczyk E [2]
  • Heddle JG [2]
  • Iwata S [2]
  • Zak KM [1]
  • Biela A [1]
  • Wilk P [1]
  • Grudnik P [1]
  • Bange G [1]
  • Wator E [1]

Journal

  • BIORXIV [7]
  • SCI ADV [5]
  • NAT PLANTS [3]
  • TO BE PUBLISHED [2]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [9]
  • RELION [3]

Microscope

  • FEI TITAN KRIOS [12]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [14]
  • PDB [14]
  • PDBe-Kb [14]
  • Pfam [14]
  • UniProt [14]
  • Gene Ontology [13]
  • InterPro [13]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • EMPIAR [6]