Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"SRPG22-003"

Filter By

Current Database

  • EMDB [29]

Current status

  • REL [29]

Sample type

  • Complex [25]
  • Protein [18]
  • Ligand [13]
  • Virus [4]

Organism

  • Severe acute respiratory syndrome coronavirus [23]
  • Homo sapiens [19]
  • Pseudomonas phage phikz [4]
  • Mycobacterium tuberculosis [2]

EM Method

  • Single-particle [29]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 250-500 kDa [4]
  • 500-1000 kDa [6]
  • 1-2 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2025 [23]
  • 2024 [6]

Author by name

  • Sun L [27]
  • Jiang S [23]
  • Lu L [23]
  • Mao Q [23]
  • Wang Q [23]
  • Zhao X [17]
  • Wu F [15]
  • Chen Z [14]
  • Chu H [13]
  • He J [13]
  • Li J [13]
  • Liu L [13]
  • Liu Y [13]
  • Long Y [13]
  • Mayer CT [13]
  • Oliveira TY [13]
  • Qiu Y [13]
  • Qiu YN [13]
  • Shi J [13]
  • Sun S [13]
  • Wang P [13]
  • Wang Z [13]
  • Xia A [13]
  • Xia R [13]
  • Xie M [13]
  • Xie Y [13]
  • Yan Y [13]
  • Zai W [13]
  • Zhang Q [13]
  • Zhou Y [13]
  • Zhu Y [13]
  • Hao A [10]
  • Liu Q [10]
  • Liu Z [10]
  • Wang X [10]
  • Xia S [10]
  • Xing L [10]
  • Xu W [10]
  • Zhang G [10]
  • Zhang X [10]
  • Fang Q [4]
  • Fokine A [4]
  • Guo M [4]
  • Han L [4]
  • Li X [4]
  • Pan J [4]
  • Pan JA [4]
  • Shao Q [4]
  • Wang A [4]
  • Wang B [4]
  • Yang Y [4]
  • Batt SM [2]
  • Besra GS [2]
  • Gao S [2]
  • Gurcha SS [2]
  • Rao Z [2]
  • Rao ZH [2]
  • Wu FY [2]
  • Zhang L [2]

Author by ORCID

  • Sun L [17]
  • Wang Q [13]
  • Jiang S [13]
  • Mayer CT [13]
  • Zhao X [13]
  • Wang Z [13]
  • Lu L [13]
  • Xie Y [13]
  • Oliveira TY [13]
  • Xie M [13]
  • Wu F [13]
  • Wang P [13]
  • Chu H [13]
  • Xia R [13]
  • Shao Q [4]
  • Pan JA [4]
  • Guo M [4]
  • Fang Q [4]
  • Wang A [4]
  • Zhao X [4]
  • Chen Z [4]
  • Rao Z [2]
  • Zhang L [2]
  • Besra GS [2]
  • Batt SM [2]

Journal

  • NAT COMMUN [17]
  • CELL [10]
  • NAT MICROBIOL [2]

Software

  • RELION [3]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [16]
  • TFS KRIOS [13]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • FEI FALCON IV 4K X 4K [25]
  • GATAN K3 6K X 4K [4]

External links

  • PDB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Pfam [17]
  • Complex Portal [15]
  • ChEBI [13]
  • ChEMBL [11]
  • Gene Ontology [11]
  • InterPro [10]
  • AlphaFold DB [9]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 29. Page 1 of 3
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Preview first 10
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EMD-62660
Download Map
3D View
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Release date: Dec. 10, 2025
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9kzd
Q-score: 0.32

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62661
Download Map
3D View
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-183
Release date: Dec. 10, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9kze
Q-score: 0.313

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62680
Download Map
3D View
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-171
Release date: Dec. 10, 2025
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 9kzz
Q-score: 0.363

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62687
Download Map
3D View
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Release date: Dec. 10, 2025
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 9l05
Q-score: 0.401

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62691
Download Map
3D View
The local refined map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Release date: Dec. 10, 2025
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 9l07
Q-score: 0.389

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62729
Download Map
3D View
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Release date: Dec. 10, 2025
Resolution: 2.95 Å
EM Method: Single-particle

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62731
Download Map
3D View
Focused refinement up-RBD1 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Release date: Dec. 10, 2025
Resolution: 4.06 Å
EM Method: Single-particle

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62733
Download Map
3D View
Focused refinement up-RBD2 of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Release date: Dec. 10, 2025
Resolution: 4.16 Å
EM Method: Single-particle

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62734
Composite map
Download Map
3D View
Structure of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-203
Release date: Dec. 10, 2025
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9l15
Q-score: 0.33

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

EMD-62744
Download Map
3D View
Raw consensus map of SARS-CoV-2 EG.5.1 Variant Spike protein complexed with antibody XGi-198
Release date: Dec. 10, 2025
Resolution: 3.08 Å
EM Method: Single-particle

Xie M, Qiu Y, Zhao X, Shi J, Liu Y, Zhang Q, He J, Li J, Liu L, Sun S, Zhu Y, Mao Q, Long Y, Oliveira TY, Wang Z, Zhou Y, Yan Y, Xia A, Zai W, Mayer CT, Xie Y, Jiang S, Lu L, Xia R, Wu F, Sun L, Wang P, Chu H, Wang Q

Nat Commun (2025) 16 pp. 10566-10566 [ Pubmed: 41298374 DOI: doi:10.1038/s41467-025-65596-0 ]

Sort by: Download
Showing 1 - 10 of 29. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [29]

Current status

  • REL [29]

Sample type

  • Complex [25]
  • Protein [18]
  • Ligand [13]
  • Virus [4]

Organism

  • Severe acute respiratory syndrome coronavirus [23]
  • Homo sapiens [19]
  • Pseudomonas phage phikz [4]
  • Mycobacterium tuberculosis [2]

EM Method

  • Single-particle [29]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [5]
  • 250-500 kDa [4]
  • 500-1000 kDa [6]
  • 1-2 MDa [1]
  • > 10 MDa [1]

Release Date

  • 2025 [23]
  • 2024 [6]

Author by name

  • Sun L [27]
  • Jiang S [23]
  • Lu L [23]
  • Mao Q [23]
  • Wang Q [23]
  • Zhao X [17]
  • Wu F [15]
  • Chen Z [14]
  • Chu H [13]
  • He J [13]
  • Li J [13]
  • Liu L [13]
  • Liu Y [13]
  • Long Y [13]
  • Mayer CT [13]
  • Oliveira TY [13]
  • Qiu Y [13]
  • Qiu YN [13]
  • Shi J [13]
  • Sun S [13]
  • Wang P [13]
  • Wang Z [13]
  • Xia A [13]
  • Xia R [13]
  • Xie M [13]
  • Xie Y [13]
  • Yan Y [13]
  • Zai W [13]
  • Zhang Q [13]
  • Zhou Y [13]
  • Zhu Y [13]
  • Hao A [10]
  • Liu Q [10]
  • Liu Z [10]
  • Wang X [10]
  • Xia S [10]
  • Xing L [10]
  • Xu W [10]
  • Zhang G [10]
  • Zhang X [10]
  • Fang Q [4]
  • Fokine A [4]
  • Guo M [4]
  • Han L [4]
  • Li X [4]
  • Pan J [4]
  • Pan JA [4]
  • Shao Q [4]
  • Wang A [4]
  • Wang B [4]
  • Yang Y [4]
  • Batt SM [2]
  • Besra GS [2]
  • Gao S [2]
  • Gurcha SS [2]
  • Rao Z [2]
  • Rao ZH [2]
  • Wu FY [2]
  • Zhang L [2]

Author by ORCID

  • Sun L [17]
  • Wang Q [13]
  • Jiang S [13]
  • Mayer CT [13]
  • Zhao X [13]
  • Wang Z [13]
  • Lu L [13]
  • Xie Y [13]
  • Oliveira TY [13]
  • Xie M [13]
  • Wu F [13]
  • Wang P [13]
  • Chu H [13]
  • Xia R [13]
  • Shao Q [4]
  • Pan JA [4]
  • Guo M [4]
  • Fang Q [4]
  • Wang A [4]
  • Zhao X [4]
  • Chen Z [4]
  • Rao Z [2]
  • Zhang L [2]
  • Besra GS [2]
  • Batt SM [2]

Journal

  • NAT COMMUN [17]
  • CELL [10]
  • NAT MICROBIOL [2]

Software

  • RELION [3]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [16]
  • TFS KRIOS [13]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • FEI FALCON IV 4K X 4K [25]
  • GATAN K3 6K X 4K [4]

External links

  • PDB [18]
  • PDBe-Kb [18]
  • UniProt [18]
  • Pfam [17]
  • Complex Portal [15]
  • ChEBI [13]
  • ChEMBL [11]
  • Gene Ontology [11]
  • InterPro [10]
  • AlphaFold DB [9]
  • DrugBank [1]