Electron Microscopy Data Bank

Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"SF349247"

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Current Database

Current status

Sample type

Organism

Homo sapiens [53]
Mus musculus [45]
Sus scrofa [32]
Escherichia coli [15]
Human immunodeficiency virus 1 [14]
(no species) [13]
Severe acute respiratory syndrome coronavirus [12]
Myxococcus xanthus [11]
Adeno-associated dependoparvovirus a [9]
Pepevirus rubrum [8]
Influenza a virus [5]
Legionella pneumophila [4]
Encephalitozoon intestinalis [4]
Macaca mulatta [4]
Lassa mammarenavirus [3]
Staphylococcus aureus [3]
Bacteriophage sp. [3]
Neisseria gonorrhoeae [3]
Saccharomyces cerevisiae [3]
Escherichia phage ms2 [2]
Clostridium botulinum [2]
Human respiratory syncytial virus [2]
Synthetic construct [2]
Drosophila melanogaster [2]
Clostridium botulinum [2]
Cavia porcellus [1]
Pseudomonas phage pp7 [1]
Tobacco mosaic virus [1]
Alphainfluenzavirus influenzae [1]
Escherichia phage ydc107_1 [1]
Escherichia phage ecszw-2 [1]
Neisseria gonorrhoeae [1]
Methylococcus capsulatus [1]
Acinetobacter phage mystique [1]
Escherichia virus qbeta [1]
Stigmatella aurantiaca [1]
Yersinia pestis [1]
Pseudomonas aeruginosa [1]
Escherichia coli [1]
Escherichia coli [1]
Gallus gallus [1]
Camelus bactrianus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Kopylov M [50]
Chua EYD [33]
Carragher B [32]
Potter CS [32]
Asenjo AB [31]
Benoit MPMH [31]
Sosa H [31]
Gorman J [29]
Kwong PD [29]
Bobe D [26]
Neselu K [26]
Tan YZ [26]
Finn MG [25]
Jenkins MC [25]
Rice WJ [25]
Wang B [25]
Wang D [24]
Zhang B [24]
Hernandez C [22]
Mascola JR [22]
Olia AS [22]
Zhou T [22]
Agbandje-mckenna M [21]
Aiyer S [21]
Baldwin PR [21]
Barad BA [21]
Benner SA [21]
Bowman ME [21]
Dordevic-marquardt S [21]
Grotjahn DA [21]
Hoshika S [21]
Hull JA [21]
Louie G [21]
Lyumkis D [21]
Mckenna R [21]
Mehrani A [21]
Mietzsch M [21]
Noel JAP [21]
Oh J [21]
Passos DO [21]
Shan Z [21]
Tan SM [21]
Dhakal S [20]
Kwok BH [20]
Paydar M [20]
Chuang GY [19]
Keshavarz-joud P [19]
Wang S [17]
Tsybovsky Y [16]
Shapiro L [14]
Bryksin AV [13]
Johnston JD [13]
Stephens T [13]
De Marco A [13]
Owji AP [12]
Alvarez Barkane Am [11]
Bhattacharya S [11]
Bourque AR [11]
Cerutti G [11]
Gennerich A [11]
Ho DD [11]
Rao L [11]
Rawi R [11]
Wang P [11]
White K [11]
Doria-rose NA [10]
Louder MK [10]
Sastry M [10]
Stuckey J [10]
Boyington JC [9]
Bylund T [9]
Chen X [9]
Ou L [9]
Shen CH [9]
Teng IT [9]
Zhang Y [9]
Zhao L [9]
Alink LM [8]
Bimela J [8]
Dong J [8]
Dutta T [8]
Einsenstein F [8]
Eisenstein F [8]
Geng H [8]
Johnston J [8]
Katsamba PS [8]
Kittredge A [8]
Mcdermott AB [8]
Paraan M [8]
Rapp M [8]
Verardi R [8]
Wang J [8]
Yang T [8]
Bhabha G [7]
Biju A [7]
Cheng C [7]
Eng ET [7]
Haynes BF [7]
Lin BC [7]
Sarfo EK [7]

Author by ORCID

Sosa H [31]
Benoit MPMH [31]
Chua EYD [31]
Asenjo AB [31]
Kwong PD [27]
Tan YZ [26]
Gorman J [26]
Wang B [25]
Kopylov M [25]
Finn MG [24]
Grotjahn DA [21]
Aiyer S [21]
Hoshika S [21]
Noel JAP [21]
Mckenna R [21]
Wang D [21]
Oh J [21]
Lyumkis D [21]
Passos DO [21]
Shan Z [21]
Kwok BH [20]
Zhou T [16]
Bobe D [15]
De Marco A [11]
Rao L [11]
Gennerich A [11]
Johnston JD [11]
Cerutti G [10]
Zhao L [9]
Yang T [8]
Zhang Y [8]
Kittredge A [8]
Wang J [8]
Sarfo EK [7]
Bylund T [7]
Eng ET [7]
Katsamba PS [7]
Sampson JM [6]
Eisenstein F [6]
Coudray N [6]
Bhabha G [6]
Nazzari A [6]
Shapiro L [5]
Jenkins MC [5]
Carragher B [5]
Cheung J [5]
Ekiert DC [5]
Harris DR [5]
Zimanyi CM [5]
Karasawa A [5]
Guo Y [4]
Zhong ED [4]
Mason RD [4]
Li H [4]
Saunders KO [4]
Roederer M [4]
Miller J [4]
Shaw GM [4]
Sheedlo MJ [4]
Pierson TC [4]
Durie CL [4]
Chung JM [4]
Parchment DK [4]
Iwasa JH [4]
Mascola JR [4]
Doria-rose NA [4]
Haynes BF [4]
Riggi M [4]
Hahn BH [4]
Usmani M [4]
Roark RS [4]
Ohi MD [4]
Lacy DB [4]
Wang P [4]
Swanson M [4]
Bonsignori M [4]
Bibollet-ruche F [4]
Raghu R [4]
Fu Z [3]
Koide S [3]
Douek DC [3]
Alseth EO [3]
Bobe D [3]
Bryksin AV [3]
Diggs M [3]
Irby I [3]
Kopylov M [3]
Nguyen K [3]
Rather PN [3]
Roush C [3]
Schmidt-krey I [3]
Xu H [3]
Lewis E [3]
Kanekiyo M [3]
Mansouri K [3]
Seaman MS [3]
Singh A [3]
Andrabi R [3]
Borgnia MJ [3]
Chen X [3]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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EMD-70119

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Pr/Pr homodimer of Stigmatella aurantiaca bacteriophytochrome 2

Release date: Oct. 29, 2025
Resolution: 6.0 Å
EM Method: Single-particle

Karki P, Menendez D, Budell W, Dangi S, Hernandez C, Mendez J, Muniyappan S, Basu S, Schwander P, Malla TN, Stojkovic EA, Schmidt M

Struct Dyn. (2025) 12 pp. 034701-034701 [ DOI: doi:10.1063/4.0000301 Pubmed: 40322674 ]

EMD-45754

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The cryo-EM structure of BamACDE complex from Neisseria gonorrhoeae

Release date: Sept. 3, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9cmw
Q-score: 0.387

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-45755

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The cryo-EM structure of BamADE subcomplex from Neisseria gonorrhoeae

Release date: Sept. 3, 2025
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 9cn0
Q-score: 0.221

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-45756

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The cryo-EM structure of BamAD subcomplex from Neisseria gonorrhoeae

Release date: Sept. 3, 2025
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 9cn1
Q-score: 0.226

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-44192

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E. coli 70S ribosome complex N1-methylated 16S A1408 arbekacin

Release date: Aug. 27, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9b4z
Q-score: 0.595

Dey D, Mattingly JM, Zelinskaya N, Dunham CM, Conn GL

Nat Commun (2025) 16 pp. 7992-7992 [ Pubmed: 40866347 DOI: doi:10.1038/s41467-025-63278-5 ]

EMD-44193

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E. coli 70S ribosome complex unmethylated 16S A1408 arbekacin

Release date: Aug. 27, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9b50
Q-score: 0.575

Dey D, Mattingly JM, Zelinskaya N, Dunham CM, Conn GL

Nat Commun (2025) 16 pp. 7992-7992 [ Pubmed: 40866347 DOI: doi:10.1038/s41467-025-63278-5 ]

EMD-44194

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E. coli 70S ribosome complex N1-methylated 16S A1408 G418

Release date: Aug. 27, 2025
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9b51
Q-score: 0.596

Dey D, Mattingly JM, Zelinskaya N, Dunham CM, Conn GL

Nat Commun (2025) 16 pp. 7992-7992 [ Pubmed: 40866347 DOI: doi:10.1038/s41467-025-63278-5 ]

EMD-72122

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MS2 bacteriophage coat protein after reassembly as a nanocrate MS2nc with no cargo and with waters modeled

Release date: Aug. 27, 2025
Resolution: 1.74 Å
EM Method: Single-particle
Fitted PDBs: 9q1b
Q-score: 0.8

Jenkins MC, Bobe D, Johnston JD, Cheung J, Karasawa A, Zimanyi CM, Dermanci O, Finn MG, de Marco A, Kopylov M

To Be Published

EMD-72123

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Mouse apoferritin encapsulated in an MS2-nanocrate: MS2nc ApoF

Release date: Aug. 27, 2025
Resolution: 2.16 Å
EM Method: Single-particle

Jenkins MC, Bobe D, Johnston JD, Cheung J, Karasawa A, Zimanyi CM, Dermanci O, Finn MG, de Marco A, Kopylov M

To Be Published

EMD-72124

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MS2 bacteriophage coat protein with waters modeled

Release date: Aug. 27, 2025
Resolution: 1.75 Å
EM Method: Single-particle
Fitted PDBs: 9q1d
Q-score: 0.789

Jenkins MC, Bobe D, Johnston JD, Cheung J, Karasawa A, Zimanyi CM, Dermanci O, Finn MG, de Marco A, Kopylov M

To Be Published

Sort by: Download

Showing 1 - 10 of 203. Page 1 of 21

Display:

Statistics

Download

Select database:

EMDB [203]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [53]
Mus musculus [45]
Sus scrofa [32]
Escherichia coli [15]
Human immunodeficiency virus 1 [14]
(no species) [13]
Severe acute respiratory syndrome coronavirus [12]
Myxococcus xanthus [11]
Adeno-associated dependoparvovirus a [9]
Pepevirus rubrum [8]
Influenza a virus [5]
Legionella pneumophila [4]
Encephalitozoon intestinalis [4]
Macaca mulatta [4]
Lassa mammarenavirus [3]
Staphylococcus aureus [3]
Bacteriophage sp. [3]
Neisseria gonorrhoeae [3]
Saccharomyces cerevisiae [3]
Escherichia phage ms2 [2]
Clostridium botulinum [2]
Human respiratory syncytial virus [2]
Synthetic construct [2]
Drosophila melanogaster [2]
Clostridium botulinum [2]
Cavia porcellus [1]
Pseudomonas phage pp7 [1]
Tobacco mosaic virus [1]
Alphainfluenzavirus influenzae [1]
Escherichia phage ydc107_1 [1]
Escherichia phage ecszw-2 [1]
Neisseria gonorrhoeae [1]
Methylococcus capsulatus [1]
Acinetobacter phage mystique [1]
Escherichia virus qbeta [1]
Stigmatella aurantiaca [1]
Yersinia pestis [1]
Pseudomonas aeruginosa [1]
Escherichia coli [1]
Escherichia coli [1]
Gallus gallus [1]
Camelus bactrianus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Kopylov M [50]
Chua EYD [33]
Carragher B [32]
Potter CS [32]
Asenjo AB [31]
Benoit MPMH [31]
Sosa H [31]
Gorman J [29]
Kwong PD [29]
Bobe D [26]
Neselu K [26]
Tan YZ [26]
Finn MG [25]
Jenkins MC [25]
Rice WJ [25]
Wang B [25]
Wang D [24]
Zhang B [24]
Hernandez C [22]
Mascola JR [22]
Olia AS [22]
Zhou T [22]
Agbandje-mckenna M [21]
Aiyer S [21]
Baldwin PR [21]
Barad BA [21]
Benner SA [21]
Bowman ME [21]
Dordevic-marquardt S [21]
Grotjahn DA [21]
Hoshika S [21]
Hull JA [21]
Louie G [21]
Lyumkis D [21]
Mckenna R [21]
Mehrani A [21]
Mietzsch M [21]
Noel JAP [21]
Oh J [21]
Passos DO [21]
Shan Z [21]
Tan SM [21]
Dhakal S [20]
Kwok BH [20]
Paydar M [20]
Chuang GY [19]
Keshavarz-joud P [19]
Wang S [17]
Tsybovsky Y [16]
Shapiro L [14]
Bryksin AV [13]
Johnston JD [13]
Stephens T [13]
De Marco A [13]
Owji AP [12]
Alvarez Barkane Am [11]
Bhattacharya S [11]
Bourque AR [11]
Cerutti G [11]
Gennerich A [11]
Ho DD [11]
Rao L [11]
Rawi R [11]
Wang P [11]
White K [11]
Doria-rose NA [10]
Louder MK [10]
Sastry M [10]
Stuckey J [10]
Boyington JC [9]
Bylund T [9]
Chen X [9]
Ou L [9]
Shen CH [9]
Teng IT [9]
Zhang Y [9]
Zhao L [9]
Alink LM [8]
Bimela J [8]
Dong J [8]
Dutta T [8]
Einsenstein F [8]
Eisenstein F [8]
Geng H [8]
Johnston J [8]
Katsamba PS [8]
Kittredge A [8]
Mcdermott AB [8]
Paraan M [8]
Rapp M [8]
Verardi R [8]
Wang J [8]
Yang T [8]
Bhabha G [7]
Biju A [7]
Cheng C [7]
Eng ET [7]
Haynes BF [7]
Lin BC [7]
Sarfo EK [7]

Author by ORCID

Sosa H [31]
Benoit MPMH [31]
Chua EYD [31]
Asenjo AB [31]
Kwong PD [27]
Tan YZ [26]
Gorman J [26]
Wang B [25]
Kopylov M [25]
Finn MG [24]
Grotjahn DA [21]
Aiyer S [21]
Hoshika S [21]
Noel JAP [21]
Mckenna R [21]
Wang D [21]
Oh J [21]
Lyumkis D [21]
Passos DO [21]
Shan Z [21]
Kwok BH [20]
Zhou T [16]
Bobe D [15]
De Marco A [11]
Rao L [11]
Gennerich A [11]
Johnston JD [11]
Cerutti G [10]
Zhao L [9]
Yang T [8]
Zhang Y [8]
Kittredge A [8]
Wang J [8]
Sarfo EK [7]
Bylund T [7]
Eng ET [7]
Katsamba PS [7]
Sampson JM [6]
Eisenstein F [6]
Coudray N [6]
Bhabha G [6]
Nazzari A [6]
Shapiro L [5]
Jenkins MC [5]
Carragher B [5]
Cheung J [5]
Ekiert DC [5]
Harris DR [5]
Zimanyi CM [5]
Karasawa A [5]
Guo Y [4]
Zhong ED [4]
Mason RD [4]
Li H [4]
Saunders KO [4]
Roederer M [4]
Miller J [4]
Shaw GM [4]
Sheedlo MJ [4]
Pierson TC [4]
Durie CL [4]
Chung JM [4]
Parchment DK [4]
Iwasa JH [4]
Mascola JR [4]
Doria-rose NA [4]
Haynes BF [4]
Riggi M [4]
Hahn BH [4]
Usmani M [4]
Roark RS [4]
Ohi MD [4]
Lacy DB [4]
Wang P [4]
Swanson M [4]
Bonsignori M [4]
Bibollet-ruche F [4]
Raghu R [4]
Fu Z [3]
Koide S [3]
Douek DC [3]
Alseth EO [3]
Bobe D [3]
Bryksin AV [3]
Diggs M [3]
Irby I [3]
Kopylov M [3]
Nguyen K [3]
Rather PN [3]
Roush C [3]
Schmidt-krey I [3]
Xu H [3]
Lewis E [3]
Kanekiyo M [3]
Mansouri K [3]
Seaman MS [3]
Singh A [3]
Andrabi R [3]
Borgnia MJ [3]
Chen X [3]

Journal

Software

Microscope

Electron Source

Film or detector model

External links