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grant_code:"S10 OD018142"

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Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Protein [8]
  • Virus [6]
  • Complex [3]
  • Ligand [3]

Organism

  • Adeno-associated dependoparvovirus a [6]
  • Gallus gallus [2]
  • Lethocerus indicus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [6]

Release Date

  • 2023 [1]
  • 2021 [6]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Agbandje-mckenna M [6]
  • Bhattacharya N [6]
  • Chipman P [6]
  • Huang R [6]
  • Mckenna R [6]
  • Penzes JJ [6]
  • Zeher A [6]
  • Taylor DW [3]
  • Taylor KA [3]
  • Hu Z [2]
  • Trybus KM [2]
  • Banerjee C [1]
  • Daneshparvar N [1]
  • Edwards RJ [1]
  • Fagnant PM [1]
  • Hojjatian A [1]
  • Huang Z [1]
  • Liu J [1]
  • Lowey S [1]
  • Taylor D [1]
  • Warrington JA [1]

Author by ORCID

  • Penzes JJ [6]
  • Mckenna R [6]
  • Zeher A [6]
  • Agbandje-mckenna M [6]
  • Chipman P [6]
  • Edwards RJ [1]

Journal

  • J VIROL [6]
  • J STRUCT BIOL [3]

Software

  • AUTO3DEM [4]
  • CISTEM [2]
  • RELION [2]
  • ACE, CTFFIND3 [1]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [8]
  • TFS KRIOS [1]

Electron Source

  • OTHER [6]
  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • DIRECT ELECTRON DE-64 8K X 8K [1]

External links

  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • ChEBI [3]
  • ChEMBL [3]
  • AlphaFold DB [2]
  • DrugBank [1]
  • EMPIAR [1]
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EMD-29646
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3D View
Raw data
EMPIAR-11555
Acto-HMM complex in ADP-state. Chicken smooth muscle HMM and chicken pectoralis actin
Release date: Aug. 30, 2023
Resolution: 19.0 Å
EM Method: Single-particle
Fitted PDBs: 8g06

Hojjatian A, Taylor DW, Daneshparvar N, Fagnant PM, Trybus KM, Taylor KA

J Struct Biol (2023) 215 pp. 107995-107995 [ DOI: doi:10.1016/j.jsb.2023.107995 Pubmed: 37414375 ]

EMD-23986
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Structure of the adeno-associated virus 9 capsid at pH 6.0
Release date: July 21, 2021
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7mtg
Q-score: 0.566

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-23993
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Structure of the adeno-associated virus 9 capsid at pH 5.5
Release date: July 21, 2021
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7mtp
Q-score: 0.518

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-23999
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Structure of the adeno-associated virus 9 capsid at pH 4.0
Release date: July 21, 2021
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 7mtw
Q-score: 0.557

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-24000
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Structure of the adeno-associated virus 9 capsid at pH pH 7.4 in complex with terminal galactose
Release date: June 9, 2021
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7mtz
Q-score: 0.687

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-24003
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Structure of the adeno-associated virus 9 capsid at pH pH 5.5 in complex with terminal galactose
Release date: June 9, 2021
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7mua
Q-score: 0.654

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-23973
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Structure of the adeno-associated virus 9 capsid at pH 7.4
Release date: June 2, 2021
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7mt0
Q-score: 0.473

Penzes JJ, Chipman P, Bhattacharya N, Zeher A, Huang R, McKenna R, Agbandje-McKenna M

J Virol (2021) 95 pp. e0084321-e0084321 [ DOI: doi:10.1128/JVI.00843-21 Pubmed: 34260280 ]

EMD-7100
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The Structure of the Actin-Smooth Muscle Myosin Motor Domain Complex in the Rigor State
Release date: Sept. 19, 2018
Resolution: 6.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 6bih
Q-score: 0.133

Banerjee C, Hu Z, Huang Z, Warrington JA, Taylor DW, Trybus KM, Lowey S, Taylor KA

J Struct Biol (2017) 200 pp. 325-333 [ DOI: doi:10.1016/j.jsb.2017.10.003 Pubmed: 29038012 ]

EMD-7029
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CryoEM map from poorly ordered myosin thick filaments isolated from asynchronous flight muscle of the large waterbug Lethocerus indicus
Release date: Oct. 11, 2017
Resolution: 6.4 Å
EM Method: Single-particle

Hu Z, Taylor DW, Edwards RJ, Taylor KA

J Struct Biol (2017) 200 pp. 334-342 [ Pubmed: 28964844 DOI: doi:10.1016/j.jsb.2017.09.009 ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Protein [8]
  • Virus [6]
  • Complex [3]
  • Ligand [3]

Organism

  • Adeno-associated dependoparvovirus a [6]
  • Gallus gallus [2]
  • Lethocerus indicus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [6]

Release Date

  • 2023 [1]
  • 2021 [6]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Agbandje-mckenna M [6]
  • Bhattacharya N [6]
  • Chipman P [6]
  • Huang R [6]
  • Mckenna R [6]
  • Penzes JJ [6]
  • Zeher A [6]
  • Taylor DW [3]
  • Taylor KA [3]
  • Hu Z [2]
  • Trybus KM [2]
  • Banerjee C [1]
  • Daneshparvar N [1]
  • Edwards RJ [1]
  • Fagnant PM [1]
  • Hojjatian A [1]
  • Huang Z [1]
  • Liu J [1]
  • Lowey S [1]
  • Taylor D [1]
  • Warrington JA [1]

Author by ORCID

  • Penzes JJ [6]
  • Mckenna R [6]
  • Zeher A [6]
  • Agbandje-mckenna M [6]
  • Chipman P [6]
  • Edwards RJ [1]

Journal

  • J VIROL [6]
  • J STRUCT BIOL [3]

Software

  • AUTO3DEM [4]
  • CISTEM [2]
  • RELION [2]
  • ACE, CTFFIND3 [1]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [8]
  • TFS KRIOS [1]

Electron Source

  • OTHER [6]
  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • DIRECT ELECTRON DE-64 8K X 8K [1]

External links

  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • ChEBI [3]
  • ChEMBL [3]
  • AlphaFold DB [2]
  • DrugBank [1]
  • EMPIAR [1]