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Current Database

  • EMDB [28]

Current status

  • REL [28]

Sample type

  • Complex [28]
  • Protein [19]
  • RNA [17]
  • Ligand [15]

Organism

  • Saccharomyces cerevisiae [27]
  • Saccharomyces cerevisiae [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [28]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [9]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 1-2 MDa [2]
  • 2-5 MDa [11]

Release Date

  • 2024 [13]
  • 2023 [6]
  • 2022 [9]

Author by name

  • Cruz VE [28]
  • Erzberger JP [28]
  • Weirich CS [27]
  • Peddada N [21]
  • Sekulski K [15]
  • Balasubramanian S [9]
  • Sailer C [9]
  • Stengel F [9]
  • Mendell JT [1]
  • Zhang H [1]
  • Zhu X [1]

Author by ORCID

  • Cruz VE [28]
  • Erzberger JP [28]
  • Weirich CS [27]
  • Sekulski K [15]
  • Peddada N [12]
  • Sailer C [9]
  • Balasubramanian S [9]
  • Stengel F [9]
  • Mendell JT [1]
  • Zhang H [1]
  • Zhu X [1]

Journal

  • NAT COMMUN [18]
  • NAT STRUCT MOL BIOL [9]
  • ACTA CRYSTALLOGR D STRUCT BIOL [7]
  • SCIENCE [1]

Software

  • RELION [27]

Microscope

  • FEI TITAN KRIOS [28]

Electron Source

  • FIELD EMISSION GUN [28]

Film or detector model

  • GATAN K3 6K X 4K [27]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [19]
  • Gene Ontology [19]
  • InterPro [19]
  • PDB [19]
  • PDBe-Kb [19]
  • Pfam [19]
  • UniProt [19]
  • ChEBI [15]
  • ChEMBL [15]
  • DrugBank [15]
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EMD-45170
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3D View
Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
Release date: Dec. 4, 2024
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 9c3h
Q-score: 0.684

Zhu X, Cruz VE, Zhang H, Erzberger JP, Mendell JT

Science (2024) 386 pp. eadq8587-eadq8587 [ DOI: doi:10.1126/science.adq8587 Pubmed: 39571015 ]

EMD-43017
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3D View
60S ribosome biogenesis intermediate Dbp10 pre-catalytic structure - Overall map
Release date: May 1, 2024
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8v83
Q-score: 0.53

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43018
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60S ribosome biogenesis intermediate Dbp10 pre-catalytic structure - PTC Local map
Release date: May 1, 2024
Resolution: 2.69 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43019
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60S ribosome biogenesis intermediate Dbp10 pre-catalytic structure - Local map L1 region
Release date: May 1, 2024
Resolution: 3.58 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43020
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3D View
60S ribosome biogenesis intermediate Dbp10 pre-catalytic structure - Local map Rrp14/Rrp15/Ssf1 region
Release date: May 1, 2024
Resolution: 2.47 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43021
Download Map
3D View
60S ribosome biogenesis intermediate Dbp10 catalytic structure - Overall map
Release date: May 1, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8v84
Q-score: 0.461

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43022
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3D View
60S ribosome biogenesis intermediate Dbp10 catalytic structure - Dbp10 Local map
Release date: May 1, 2024
Resolution: 2.9 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43023
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60S ribosome biogenesis intermediate Dbp10 catalytic structure - Low-pass filtered locally refined map
Release date: May 1, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8v85
Q-score: 0.043

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43024
Download Map
3D View
60S ribosome biogenesis intermediate Dbp10 catalytic structure - L1 local map
Release date: May 1, 2024
Resolution: 3.57 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

EMD-43026
Download Map
3D View
60S ribosome biogenesis intermediate Dbp10 catalytic intermediate - Rrp14/Rrp15/Ssf1 local map
Release date: May 1, 2024
Resolution: 2.81 Å
EM Method: Single-particle

Cruz VE, Weirich CS, Peddada N, Erzberger JP

Nat Commun (2024) 15 pp. 3296-3296 [ DOI: doi:10.1038/s41467-024-47616-7 Pubmed: 38632236 ]

Sort by: Download
Showing 1 - 10 of 28. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [28]

Current status

  • REL [28]

Sample type

  • Complex [28]
  • Protein [19]
  • RNA [17]
  • Ligand [15]

Organism

  • Saccharomyces cerevisiae [27]
  • Saccharomyces cerevisiae [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [28]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [9]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [2]
  • 1-2 MDa [2]
  • 2-5 MDa [11]

Release Date

  • 2024 [13]
  • 2023 [6]
  • 2022 [9]

Author by name

  • Cruz VE [28]
  • Erzberger JP [28]
  • Weirich CS [27]
  • Peddada N [21]
  • Sekulski K [15]
  • Balasubramanian S [9]
  • Sailer C [9]
  • Stengel F [9]
  • Mendell JT [1]
  • Zhang H [1]
  • Zhu X [1]

Author by ORCID

  • Cruz VE [28]
  • Erzberger JP [28]
  • Weirich CS [27]
  • Sekulski K [15]
  • Peddada N [12]
  • Sailer C [9]
  • Balasubramanian S [9]
  • Stengel F [9]
  • Mendell JT [1]
  • Zhang H [1]
  • Zhu X [1]

Journal

  • NAT COMMUN [18]
  • NAT STRUCT MOL BIOL [9]
  • ACTA CRYSTALLOGR D STRUCT BIOL [7]
  • SCIENCE [1]

Software

  • RELION [27]

Microscope

  • FEI TITAN KRIOS [28]

Electron Source

  • FIELD EMISSION GUN [28]

Film or detector model

  • GATAN K3 6K X 4K [27]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [19]
  • Gene Ontology [19]
  • InterPro [19]
  • PDB [19]
  • PDBe-Kb [19]
  • Pfam [19]
  • UniProt [19]
  • ChEBI [15]
  • ChEMBL [15]
  • DrugBank [15]