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grant_code:"R35GM122564"

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [11]
  • Protein [7]
  • Virus [7]
  • Ligand [3]

Organism

  • Homo sapiens [13]
  • Adeno-associated dependoparvovirus b [7]
  • Adeno-associated virus [5]
  • Adeno-associated dependoparvovirus a [1]
  • Adeno-associated dependoparvovirus a [1]
  • Adeno-associated dependoparvovirus a [1]

EM Method

  • Subtomogram averaging [9]
  • Single-particle [8]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [7]
  • ≥ 20Å and < 30Å [9]

Model molecular weight

  • 2-5 MDa [4]
  • 5-10 MDa [3]

Release Date

  • 2023 [1]
  • 2022 [12]
  • 2020 [3]
  • 2019 [1]

Author by name

  • Chapman MS [16]
  • Silveria MA [15]
  • Zane GM [13]
  • Hu G [11]
  • Stagg SM [11]
  • Hu GQ [10]
  • Silveria M [5]
  • Large EE [4]
  • White TA [4]
  • Large E [2]
  • Weerakoon O [2]
  • Xie Q [2]
  • Chapman M [1]
  • David L [1]
  • Davulcu O [1]
  • Duan R [1]
  • Gingerich DS [1]
  • Meyer N [1]
  • Meyer NL [1]
  • Noble AJ [1]
  • Trzynka A [1]
  • White T [1]
  • Yoshioka C [1]
  • Yoshioka CK [1]
  • Zane G [1]
  • Zou X [1]

Author by ORCID

  • Chapman MS [16]
  • Stagg SM [11]
  • White TA [2]
  • Zane GM [2]
  • Large EE [2]
  • Noble AJ [1]
  • Yoshioka C [1]
  • Meyer NL [1]

Journal

  • J VIROL [12]
  • VIRUSES [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ELIFE [1]

Software

  • EMAN [9]
  • RELION [8]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [17]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Complex Portal [1]
  • EMPIAR [1]
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Showing 1 - 10 of 17. Page 1 of 2
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EMD-25903
Download Map
3D View
Cryo-electron microscopy of Adeno-associated virus serotype 4 at 2.2 A
Release date: Jan. 25, 2023
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 7thr
Q-score: 0.733

Zane G, Silveria M, Meyer N, White T, Duan R, Zou X, Chapman M

Acta Crystallogr D Struct Biol (2023) 79 pp. 140-153 [ Pubmed: 36762860 DOI: doi:10.1107/S2059798322012190 ]

EMD-25909
Download Map
3D View
Adeno-associated Virus Go.1 at 2.9 Angstroms resolution, AAVGo.1 AAV-Go
Release date: Nov. 23, 2022
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7ti4
Q-score: 0.61

Large EE, Silveria MA, Weerakoon O, White TA, Chapman MS

J Virol (2022) 96 pp. e0148422-e0148422 [ Pubmed: 36453885 DOI: doi:10.1128/jvi.01484-22 ]

EMD-25910
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3D View
Adeno-associated virus Go.1 in Complex With Its Cellular Receptor AAVR at 2.4 Angstroms Resolution, AAVGo.1 AAVR
Release date: Nov. 23, 2022
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7ti5
Q-score: 0.655

Large EE, Silveria MA, Weerakoon O, White TA, Chapman MS

J Virol (2022) 96 pp. e0148422-e0148422 [ Pubmed: 36453885 DOI: doi:10.1128/jvi.01484-22 ]

EMD-26172
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3D View
Global average of aligned subtomograms of AAV2 bound with PKD1-2
Release date: June 1, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26173
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3D View
First class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Release date: June 1, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26174
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3D View
Second class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Release date: June 1, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26175
Download Map
3D View
Third class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Release date: June 1, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26176
Download Map
3D View
Fourth class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Release date: June 1, 2022
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26177
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3D View
SPR reconstruction of AAV5 bound with PKD1-2
Release date: June 1, 2022
Resolution: 2.88 Å
EM Method: Single-particle

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

EMD-26182
Download Map
3D View
Global average of aligned subtomograms of AAV5 bound with PKD1-2
Release date: June 1, 2022
Resolution: 25.0 Å
EM Method: Subtomogram averaging

Hu G, Silveria MA, Zane GM, Chapman MS, Stagg SM

J Virol (2022) 96 pp. e0010622-e0010622 [ DOI: doi:10.1128/jvi.00106-22 Pubmed: 35674430 ]

Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [11]
  • Protein [7]
  • Virus [7]
  • Ligand [3]

Organism

  • Homo sapiens [13]
  • Adeno-associated dependoparvovirus b [7]
  • Adeno-associated virus [5]
  • Adeno-associated dependoparvovirus a [1]
  • Adeno-associated dependoparvovirus a [1]
  • Adeno-associated dependoparvovirus a [1]

EM Method

  • Subtomogram averaging [9]
  • Single-particle [8]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [7]
  • ≥ 20Å and < 30Å [9]

Model molecular weight

  • 2-5 MDa [4]
  • 5-10 MDa [3]

Release Date

  • 2023 [1]
  • 2022 [12]
  • 2020 [3]
  • 2019 [1]

Author by name

  • Chapman MS [16]
  • Silveria MA [15]
  • Zane GM [13]
  • Hu G [11]
  • Stagg SM [11]
  • Hu GQ [10]
  • Silveria M [5]
  • Large EE [4]
  • White TA [4]
  • Large E [2]
  • Weerakoon O [2]
  • Xie Q [2]
  • Chapman M [1]
  • David L [1]
  • Davulcu O [1]
  • Duan R [1]
  • Gingerich DS [1]
  • Meyer N [1]
  • Meyer NL [1]
  • Noble AJ [1]
  • Trzynka A [1]
  • White T [1]
  • Yoshioka C [1]
  • Yoshioka CK [1]
  • Zane G [1]
  • Zou X [1]

Author by ORCID

  • Chapman MS [16]
  • Stagg SM [11]
  • White TA [2]
  • Zane GM [2]
  • Large EE [2]
  • Noble AJ [1]
  • Yoshioka C [1]
  • Meyer NL [1]

Journal

  • J VIROL [12]
  • VIRUSES [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • ELIFE [1]

Software

  • EMAN [9]
  • RELION [8]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [17]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • FEI FALCON III 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Complex Portal [1]
  • EMPIAR [1]