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grant_code:"R35GM118080"

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Current Database

  • EMDB [29]

Current status

  • REL [29]

Sample type

  • Complex [29]
  • Ligand [29]
  • Protein [29]

Organism

  • Schizosaccharomyces pombe [29]

EM Method

  • Single-particle [29]

Resolution

  • ≥ 2Å and < 3Å [12]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [7]
  • 100-250 kDa [22]

Release Date

  • 2024 [29]

Author by name

  • Delos Reyes Amv [29]
  • Hann ZS [29]
  • Ji C [29]
  • Kochanczyk T [29]
  • Lima CD [29]
  • Lux MC [29]
  • Tan DS [29]

Author by ORCID

  • Lux MC [29]
  • Kochanczyk T [29]
  • Delos Reyes Amv [29]
  • Tan DS [29]
  • Lima CD [29]
  • Hann ZS [29]

Journal

  • NATURE [29]

Software

  • CRYOSPARC [29]

Microscope

  • FEI TITAN KRIOS [29]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K3 6K X 4K [29]

External links

  • AlphaFold DB [29]
  • Gene Ontology [29]
  • InterPro [29]
  • PDB [29]
  • PDBe-Kb [29]
  • Pfam [29]
  • UniProt [29]
  • ChEBI [22]
  • ChEMBL [22]
  • DrugBank [22]
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Showing 1 - 10 of 29. Page 1 of 3
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EMD-44200
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3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1
Release date: June 5, 2024
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9b55
Q-score: 0.524

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44201
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3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2
Release date: June 5, 2024
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 9b56
Q-score: 0.465

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44202
Download Map
3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3
Release date: June 5, 2024
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9b57
Q-score: 0.465

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44203
Download Map
3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4
Release date: June 5, 2024
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 9b58
Q-score: 0.447

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44204
Download Map
3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5
Release date: June 5, 2024
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 9b59
Q-score: 0.444

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44205
Download Map
3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6
Release date: June 5, 2024
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9b5a
Q-score: 0.4

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44206
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3D View
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7
Release date: June 5, 2024
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9b5b
Q-score: 0.46

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44207
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3D View
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic doubly Ub-loaded - consensus map and model
Release date: June 5, 2024
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9b5c
Q-score: 0.614

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44208
Download Map
3D View
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic doubly Ub-loaded - Ub T class 1 map and model from consensus
Release date: June 5, 2024
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9b5d
Q-score: 0.552

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

EMD-44209
Download Map
3D View
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic doubly Ub-loaded - Ub T class 10 map and model from consensus
Release date: June 5, 2024
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 9b5e
Q-score: 0.558

Kochanczyk T, Hann ZS, Lux MC, Delos Reyes AMV, Ji C, Tan DS, Lima CD

Nature (2024) 633 pp. 216-223 [ Pubmed: 39143218 DOI: doi:10.1038/s41586-024-07828-9 ]

Sort by: Download
Showing 1 - 10 of 29. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [29]

Current status

  • REL [29]

Sample type

  • Complex [29]
  • Ligand [29]
  • Protein [29]

Organism

  • Schizosaccharomyces pombe [29]

EM Method

  • Single-particle [29]

Resolution

  • ≥ 2Å and < 3Å [12]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [7]
  • 100-250 kDa [22]

Release Date

  • 2024 [29]

Author by name

  • Delos Reyes Amv [29]
  • Hann ZS [29]
  • Ji C [29]
  • Kochanczyk T [29]
  • Lima CD [29]
  • Lux MC [29]
  • Tan DS [29]

Author by ORCID

  • Lux MC [29]
  • Kochanczyk T [29]
  • Delos Reyes Amv [29]
  • Tan DS [29]
  • Lima CD [29]
  • Hann ZS [29]

Journal

  • NATURE [29]

Software

  • CRYOSPARC [29]

Microscope

  • FEI TITAN KRIOS [29]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K3 6K X 4K [29]

External links

  • AlphaFold DB [29]
  • Gene Ontology [29]
  • InterPro [29]
  • PDB [29]
  • PDBe-Kb [29]
  • Pfam [29]
  • UniProt [29]
  • ChEBI [22]
  • ChEMBL [22]
  • DrugBank [22]