Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"R35GM118070"

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • RNA [6]
  • Protein [4]
  • Ligand [2]

Organism

  • Brome mosaic virus [3]
  • Giardia intestinalis [3]
  • Phaseolus vulgaris [2]
  • Rabbit hemorrhagic disease virus [1]
  • Tetrahymena thermophila [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2024 [3]
  • 2022 [1]
  • 2021 [3]

Author by name

  • Kieft JS [8]
  • Bonilla SL [4]
  • Sherlock ME [4]
  • Bilodeau DY [3]
  • Eiler DR [3]
  • Macfadden A [3]
  • Reigan P [3]
  • Rissland OS [3]
  • Taliaferro JM [3]
  • Wimberly BT [3]
  • Langeberg CJ [1]
  • Segar KE [1]
  • Vicens Q [1]

Author by ORCID

  • Kieft JS [5]
  • Sherlock ME [4]
  • Bonilla SL [4]
  • Macfadden A [3]
  • Reigan P [3]
  • Langeberg CJ [1]
  • Vicens Q [1]

Journal

  • SCIENCE [3]
  • STRUCTURE [3]
  • CELL REP [1]
  • SCI ADV [1]

Software

  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [5]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [6]
  • AlphaFold DB [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • UniProt [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • EMPIAR [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-45307
Download Map
3D View
Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
Release date: Feb. 19, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9c8k
Q-score: 0.256

Sherlock ME, Langeberg CJ, Segar KE, Kieft JS

Cell Rep (2025) 44 pp. 115236-115236 [ Pubmed: 39893634 DOI: doi:10.1016/j.celrep.2025.115236 ]

EMD-29897
Download Map
3D View
Focused refinement of the 40S subunit head of the 80S Giardia lamblia ribosome at 2.94 angstroms resolution.
Release date: April 17, 2024
Resolution: 2.94 Å
EM Method: Single-particle

Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS

Structure (2024) 32 pp. 400-410.e4 [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]

EMD-29906
Download Map
3D View
80S Giardia lamblia ribosome at 2.66 angstroms resolution with Emetine in the the V1 conformation
Release date: April 17, 2024
Resolution: 2.66 Å
EM Method: Single-particle

Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS

Structure (2024) 32 pp. 400-410.e4 [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]

EMD-29407
Download Map
3D View
60S subunit of the Giardia lamblia 80S ribosome
Release date: Jan. 31, 2024
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8fru
Q-score: 0.648

Eiler DR, Wimberly BT, Bilodeau DY, Taliaferro JM, Reigan P, Rissland OS, Kieft JS

Structure (2024) 32 pp. 400- [ Pubmed: 38242118 DOI: doi:10.1016/j.str.2023.12.015 ]

EMD-26816
Download Map
3D View
Kinetically trapped misfolded state of the Tetrahymena ribozyme
Release date: Aug. 31, 2022
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7uvt
Q-score: 0.314

Bonilla SL, Vicens Q, Kieft JS

Sci Adv (2022) 8 pp. eabq4144-eabq4144 [ DOI: doi:10.1126/sciadv.abq4144 Pubmed: 36026457 ]

EMD-24952
Download Map
3D View
Raw data
EMPIAR-10993
tRNA-like Structure from Brome Mosaic Virus
Release date: Dec. 1, 2021
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7sam
Q-score: 0.224

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

EMD-25023
Download Map
3D View
tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 1.
Release date: Dec. 1, 2021
Resolution: 5.51 Å
EM Method: Single-particle
Fitted PDBs: 7sc6
Q-score: 0.151

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

EMD-25041
Download Map
3D View
tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 2.
Release date: Dec. 1, 2021
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 7scq
Q-score: 0.109

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • RNA [6]
  • Protein [4]
  • Ligand [2]

Organism

  • Brome mosaic virus [3]
  • Giardia intestinalis [3]
  • Phaseolus vulgaris [2]
  • Rabbit hemorrhagic disease virus [1]
  • Tetrahymena thermophila [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 1-2 MDa [2]

Release Date

  • 2025 [1]
  • 2024 [3]
  • 2022 [1]
  • 2021 [3]

Author by name

  • Kieft JS [8]
  • Bonilla SL [4]
  • Sherlock ME [4]
  • Bilodeau DY [3]
  • Eiler DR [3]
  • Macfadden A [3]
  • Reigan P [3]
  • Rissland OS [3]
  • Taliaferro JM [3]
  • Wimberly BT [3]
  • Langeberg CJ [1]
  • Segar KE [1]
  • Vicens Q [1]

Author by ORCID

  • Kieft JS [5]
  • Sherlock ME [4]
  • Bonilla SL [4]
  • Macfadden A [3]
  • Reigan P [3]
  • Langeberg CJ [1]
  • Vicens Q [1]

Journal

  • SCIENCE [3]
  • STRUCTURE [3]
  • CELL REP [1]
  • SCI ADV [1]

Software

  • CRYOSPARC [1]

Microscope

  • FEI TITAN KRIOS [5]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [6]
  • AlphaFold DB [4]
  • Gene Ontology [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • UniProt [4]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • EMPIAR [1]
  • SCOP2 [1]