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grant_code:"R01GM136936"

Filter By

Current Database

  • EMDB [55]

Current status

  • REL [55]

Sample type

  • Complex [55]
  • Protein [26]
  • Ligand [25]
  • RNA [23]

Organism

  • Escherichia coli [30]
  • Listeria innocua [19]
  • Enterobacteria phage t4 [15]
  • Pseudomonas aeruginosa [9]
  • Mycolicibacterium smegmatis [5]
  • Bacteriophage sp. [4]
  • Escherichia coli [4]
  • Listeria monocytogenes [3]
  • Mycobacterium tuberculosis [1]

EM Method

  • Single-particle [55]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [44]

Model molecular weight

  • 50-100 kDa [3]
  • 2-5 MDa [23]

Release Date

  • 2024 [45]
  • 2023 [1]
  • 2022 [9]

Author by name

  • Gagnon MG [55]
  • Basu RS [28]
  • Rybak MY [26]
  • Seely SM [20]
  • Li L [17]
  • Lin J [17]
  • Sherman MB [9]
  • Basle A [5]
  • Blaza JN [5]
  • Brown CR [5]
  • Connolly JPR [5]
  • Csorgo B [5]
  • Dingwall C [5]
  • Ekemezie CL [5]
  • Helena-bueno K [5]
  • Hill CH [5]
  • Melnikov SV [5]
  • Moynihan PJ [5]
  • Schneider C [5]
  • Sullivan R [5]
  • Rybak M [2]
  • De Tarafder A [1]
  • Ge X [1]
  • Parajuli NP [1]
  • Sanyal S [1]

Author by ORCID

  • Gagnon MG [47]
  • Rybak MY [24]
  • Lin J [17]
  • Li L [17]
  • Blaza JN [5]
  • Schneider C [5]
  • Ekemezie CL [5]
  • Hill CH [5]
  • Brown CR [5]
  • Melnikov SV [5]
  • Csorgo B [5]
  • Moynihan PJ [5]
  • Rybak M [2]
  • Basu RS [1]
  • Seely SM [1]
  • Ge X [1]
  • Parajuli NP [1]
  • De Tarafder A [1]
  • Sanyal S [1]

Journal

  • NAT STRUCT MOL BIOL [21]
  • NUCLEIC ACIDS RES [19]
  • NAT COMMUN [10]
  • NATURE [5]

Software

  • CRYOSPARC [55]
  • UCSF CHIMERA [11]

Microscope

  • TFS KRIOS [55]

Electron Source

  • FIELD EMISSION GUN [55]

Film or detector model

  • FEI FALCON III 4K X 4K [41]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]

External links

  • AlphaFold DB [26]
  • Gene Ontology [26]
  • InterPro [26]
  • PDB [26]
  • PDBe-Kb [26]
  • Pfam [26]
  • UniProt [26]
  • ChEBI [25]
  • ChEMBL [25]
  • DrugBank [25]
  • EMPIAR [13]
Sort by: Download
Showing 1 - 10 of 55. Page 1 of 6
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EMD-29618
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe State I-B
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

EMD-29619
Download Map
3D View
ApoRF3 bound to an E. coli non-rotated ribosome termination complex, from focused classification and refinement State I-B
Release date: July 17, 2024
Resolution: 3.7 Å
EM Method: Single-particle

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

EMD-29620
Composite map
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe Composite state I-B
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fzd
Q-score: 0.552

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) 31 pp. 1909-1920 [ DOI: doi:10.1038/s41594-024-01360-0 Pubmed: 39030416 ]

EMD-29621
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe State I-A
Release date: July 17, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8fze
Q-score: 0.511

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) 31 pp. 1909-1920 [ DOI: doi:10.1038/s41594-024-01360-0 Pubmed: 39030416 ]

EMD-29625
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe State II-A
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle

Li L, Rybak M, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

EMD-29626
Download Map
3D View
RF3-GDPCP bound to an E. coli non-rotated ribosome termination complex, from focused classification and refinement State II-A
Release date: July 17, 2024
Resolution: 3.8 Å
EM Method: Single-particle

Li L, Rybak M, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

EMD-29627
Composite map
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe Composite state II-A
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fzg
Q-score: 0.537

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) 31 pp. 1909-1920 [ DOI: doi:10.1038/s41594-024-01360-0 Pubmed: 39030416 ]

EMD-29628
Download Map
3D View
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe State II-D
Release date: July 17, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fzh
Q-score: 0.53

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) 31 pp. 1909-1920 [ DOI: doi:10.1038/s41594-024-01360-0 Pubmed: 39030416 ]

EMD-29629
Download Map
3D View
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe State II-B
Release date: July 17, 2024
Resolution: 3.1 Å
EM Method: Single-particle

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

EMD-29630
Download Map
3D View
RF3-GDPCP bound to an E. coli rotated ribosome, from focused classification and refinement State II-B
Release date: July 17, 2024
Resolution: 3.6 Å
EM Method: Single-particle

Li L, Rybak MY, Lin J, Gagnon MG

Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01360-0 ]

Sort by: Download
Showing 1 - 10 of 55. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [55]

Current status

  • REL [55]

Sample type

  • Complex [55]
  • Protein [26]
  • Ligand [25]
  • RNA [23]

Organism

  • Escherichia coli [30]
  • Listeria innocua [19]
  • Enterobacteria phage t4 [15]
  • Pseudomonas aeruginosa [9]
  • Mycolicibacterium smegmatis [5]
  • Bacteriophage sp. [4]
  • Escherichia coli [4]
  • Listeria monocytogenes [3]
  • Mycobacterium tuberculosis [1]

EM Method

  • Single-particle [55]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [44]

Model molecular weight

  • 50-100 kDa [3]
  • 2-5 MDa [23]

Release Date

  • 2024 [45]
  • 2023 [1]
  • 2022 [9]

Author by name

  • Gagnon MG [55]
  • Basu RS [28]
  • Rybak MY [26]
  • Seely SM [20]
  • Li L [17]
  • Lin J [17]
  • Sherman MB [9]
  • Basle A [5]
  • Blaza JN [5]
  • Brown CR [5]
  • Connolly JPR [5]
  • Csorgo B [5]
  • Dingwall C [5]
  • Ekemezie CL [5]
  • Helena-bueno K [5]
  • Hill CH [5]
  • Melnikov SV [5]
  • Moynihan PJ [5]
  • Schneider C [5]
  • Sullivan R [5]
  • Rybak M [2]
  • De Tarafder A [1]
  • Ge X [1]
  • Parajuli NP [1]
  • Sanyal S [1]

Author by ORCID

  • Gagnon MG [47]
  • Rybak MY [24]
  • Lin J [17]
  • Li L [17]
  • Blaza JN [5]
  • Schneider C [5]
  • Ekemezie CL [5]
  • Hill CH [5]
  • Brown CR [5]
  • Melnikov SV [5]
  • Csorgo B [5]
  • Moynihan PJ [5]
  • Rybak M [2]
  • Basu RS [1]
  • Seely SM [1]
  • Ge X [1]
  • Parajuli NP [1]
  • De Tarafder A [1]
  • Sanyal S [1]

Journal

  • NAT STRUCT MOL BIOL [21]
  • NUCLEIC ACIDS RES [19]
  • NAT COMMUN [10]
  • NATURE [5]

Software

  • CRYOSPARC [55]
  • UCSF CHIMERA [11]

Microscope

  • TFS KRIOS [55]

Electron Source

  • FIELD EMISSION GUN [55]

Film or detector model

  • FEI FALCON III 4K X 4K [41]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]

External links

  • AlphaFold DB [26]
  • Gene Ontology [26]
  • InterPro [26]
  • PDB [26]
  • PDBe-Kb [26]
  • Pfam [26]
  • UniProt [26]
  • ChEBI [25]
  • ChEMBL [25]
  • DrugBank [25]
  • EMPIAR [13]