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grant_code:"R01GM079429"

Filter By

Current Database

  • EMDB [79]

Current status

  • REL [79]

Sample type

  • Complex [62]
  • Protein [44]
  • Ligand [20]
  • RNA [18]
  • Cellular component [9]
  • Cell [6]
  • Virus [2]

Organism

  • Homo sapiens [29]
  • Helicobacter pylori [8]
  • Tetrahymena thermophila [8]
  • Saccharopolyspora erythraea [6]
  • Enterobacteria phage m13 [6]
  • Toxoplasma gondii [5]
  • Plasmodium falciparum [4]
  • Severe acute respiratory syndrome coronavirus [3]
  • Pseudomonas aeruginosa [3]
  • Toxoplasma gondii [3]
  • Streptococcus thermophilus [2]
  • Mycobacterium sp. (strain mcs) [2]
  • Saccharomyces cerevisiae [2]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Human herpesvirus 3 [1]
  • Salmonella phage p22 [1]
  • Meiothermus taiwanensis [1]
  • Singapore grouper iridovirus [1]
  • Human coronavirus nl63 [1]
  • Toxoplasma gondii [1]
  • Dictyostelium discoideum [1]

EM Method

  • Single-particle [64]
  • Subtomogram averaging [8]
  • Tomography [7]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [27]
  • ≥ 4Å and < 5Å [6]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [8]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [3]

Model molecular weight

  • 0-50 kDa [3]
  • 100-250 kDa [7]
  • 250-500 kDa [20]
  • 500-1000 kDa [16]
  • 1-2 MDa [7]
  • 2-5 MDa [2]

Release Date

  • 2024 [5]
  • 2023 [8]
  • 2022 [18]
  • 2021 [11]
  • 2020 [13]
  • 2019 [21]
  • 2016 [3]

Author by name

  • Chiu W [78]
  • Li S [48]
  • Zhang K [48]
  • Pintilie GD [41]
  • Schmid MF [35]
  • Pintilie G [33]
  • Roh SH [20]
  • Boothroyd JC [13]
  • Sun SY [13]
  • Das R [12]
  • Frydman J [11]
  • Gestaut D [11]
  • Leitner A [11]
  • Ma B [11]
  • Mou TC [11]
  • Su Z [11]
  • Chen M [8]
  • Kappel K [8]
  • Ludtke SJ [8]
  • Palo MZ [8]
  • Segev-zarko LA [8]
  • Aebersold R [7]
  • Joachimiak LA [7]
  • Walzthoeni T [7]
  • Au SWN [6]
  • Bathe M [6]
  • Cogan DP [6]
  • Craik CS [6]
  • Gao Y [6]
  • Khosla C [6]
  • Li X [6]
  • Ratanalert S [6]
  • Rouskin S [6]
  • Zhang H [6]
  • Zhang Q [6]
  • Van Den Bedem H [6]
  • Egan ES [5]
  • Gestaut DR [5]
  • Huang Z [5]
  • Kim CY [5]
  • Segev-zarko L [5]
  • Segev-zarko L- [5]
  • Staggers SR [5]
  • Zhu Y [5]
  • Allan MF [4]
  • Collier M [4]
  • Palo M [4]
  • Park J [4]
  • Parsons MF [4]
  • Pullen KM [4]
  • Rangan R [4]
  • Shepherd TR [4]
  • Zhang X [4]
  • Zhao Y [4]
  • Chen DH [3]
  • Jakana J [3]
  • Wang S [3]
  • Allan M [2]
  • Baric RS [2]
  • Bernardin-souibgui C [2]
  • Case DA [2]
  • Chae HD [2]
  • Chen S [2]
  • Chin JA [2]
  • Chipot C [2]
  • D Souza V [2]
  • Dai W [2]
  • Darrow MC [2]
  • Dror RO [2]
  • Galaz-montoya JG [2]
  • Glenn JS [2]
  • Guan X [2]
  • Guo M [2]
  • Hagey RJ [2]
  • Hameedi MA [2]
  • Haslecker R [2]
  • Hecksel CW [2]
  • Herrell E [2]
  • Horikoshi N [2]
  • Hou YJ [2]
  • Jeong BC [2]
  • Khan YA [2]
  • Kladwang W [2]
  • Kretsch R [2]
  • Kretsch RC [2]
  • Luo B [2]
  • Ma Z [2]
  • Mitchell PG [2]
  • Nam Y [2]
  • Parsons M [2]
  • Partin A [2]
  • Partin AC [2]
  • Pham EA [2]
  • Powers AS [2]
  • Pullen K [2]
  • Sakamoto KM [2]
  • Sheahan TP [2]
  • Shekhar M [2]
  • Shepherd T [2]
  • Singharoy A [2]

Author by ORCID

  • Chiu W [74]
  • Zhang K [33]
  • Li S [31]
  • Schmid MF [30]
  • Pintilie GD [27]
  • Pintilie G [18]
  • Sun SY [13]
  • Boothroyd JC [13]
  • Das R [11]
  • Su Z [11]
  • Frydman J [11]
  • Ludtke SJ [8]
  • Kappel K [8]
  • Chen M [8]
  • Roh SH [8]
  • Segev-zarko LA [8]
  • Palo MZ [8]
  • Leitner A [7]
  • Khosla C [6]
  • Craik CS [6]
  • Au SWN [6]
  • Li X [6]
  • Van Den Bedem H [6]
  • Cogan DP [6]
  • Staggers SR [5]
  • Segev-zarko L- [5]
  • Ratanalert S [4]
  • Pullen KM [4]
  • Bathe M [4]
  • Park J [4]
  • Parsons MF [4]
  • Zhao Y [4]
  • Rangan R [3]
  • Huang Z [3]
  • Wang S [3]
  • Wakatsuki S [2]
  • Darrow MC [2]
  • Shekhar M [2]
  • Galaz-montoya JG [2]
  • Jeong BC [2]
  • Suomivuori CM [2]
  • Wilkens S [2]
  • Mitchell PG [2]
  • Herrell E [2]
  • Dror RO [2]
  • Kretsch RC [2]
  • Nam Y [2]
  • Singharoy A [2]
  • Chipot C [2]
  • Luo B [2]
  • Khan YA [2]
  • Sakamoto KM [2]
  • Arvin AM [1]
  • Baric RS [1]
  • Bushnell DA [1]
  • Hsieh KY [1]
  • Sheahan TP [1]
  • Hagey RJ [1]
  • Chmielewski D [1]
  • Oliver SL [1]
  • Chen DH [1]
  • Kretsch R [1]
  • Pham EA [1]
  • Hou YJ [1]
  • Zheludev IN [1]
  • Simmons G [1]
  • Wu J [1]
  • Jin J [1]
  • Wu MT [1]

Journal

  • PNAS [21]
  • CELL [11]
  • NAT COMMUN [7]
  • SCIENCE [6]
  • CELL RES [5]
  • MBIO [5]
  • BIORXIV [4]
  • NATURE [4]
  • ACS CENT SCI [3]
  • NAT METHODS [3]
  • MICROSC MICROANAL [2]
  • MOL CELL [2]
  • SCI ADV [2]
  • TO BE PUBLISHED [2]
  • BIOPHYS J [1]
  • J BIOL CHEM [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [28]
  • RELION [24]
  • EMAN2 [13]
  • CTFFIND [8]
  • IMOD [6]
  • MPSA [2]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [52]
  • JEOL 3200FSC [8]
  • FEI TALOS ARCTICA [6]
  • FEI TECNAI ARCTICA [6]
  • TFS TALOS [3]
  • JEOL 2100 [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [77]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [55]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 6K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN ULTRASCAN 10000 10K X 10K [1]

External links

  • PDB [55]
  • UniProt [44]
  • Gene Ontology [43]
  • InterPro [43]
  • PDBe-Kb [43]
  • Pfam [43]
  • AlphaFold DB [40]
  • ChEBI [17]
  • Complex Portal [17]
  • ChEMBL [16]
  • DrugBank [16]
  • EMPIAR [13]
  • SCOP2 [2]
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EMD-42498
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3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-42499
Download Map
3D View
Raw data
EMPIAR-11844
Tetrahymena ribozyme with water and magnesium ions
Release date: Nov. 20, 2024
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565

Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Zhang K, Chiu W

Nature (2025) [ DOI: doi:10.1038/s41586-025-08855-w Pubmed: 40068818 ]

EMD-28138
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3D reconstruction of the apical complex of Plasmodium falciparum 3D7 free merozoite
Release date: Feb. 28, 2024
EM Method: Tomography

Sun SY, Segev-Zarko L-, Pintilie GD, Kim CY, Staggers SR, Schmid MF, Egan ES, Chiu W, Boothroyd JC

Mbio (2024) 15 pp. e0286423-e0286423 [ Pubmed: 38456679 DOI: doi:10.1128/mbio.02864-23 ]

EMD-28141
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3D reconstruction of the apical complex of Plasmodium falciparum 3D7 free merozoite
Release date: Feb. 28, 2024
EM Method: Tomography

Sun SY, Segev-Zarko L-, Pintilie GD, Kim CY, Staggers SR, Schmid MF, Egan ES, Chiu W, Boothroyd JC

Mbio (2024) 15 pp. e0286423-e0286423 [ Pubmed: 38456679 DOI: doi:10.1128/mbio.02864-23 ]

EMD-28142
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3D Reconstruction of Plasmodium falciparum 3D7 free merozoite
Release date: Feb. 28, 2024
EM Method: Tomography

Sun SY, Segev-Zarko L-, Pintilie GD, Kim CY, Staggers SR, Schmid MF, Egan ES, Chiu W, Boothroyd JC

Mbio (2024) 15 pp. e0286423-e0286423 [ Pubmed: 38456679 DOI: doi:10.1128/mbio.02864-23 ]

EMD-28125
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3D View
Plasmodium falciparum merozoites apical 2-ring units
Release date: Oct. 11, 2023
Resolution: 41.0 Å
EM Method: Subtomogram averaging

Sun SY, Segev-Zarko L-, Pintilie GD, Kim CY, Staggers SR, Schmid MF, Egan ES, Chiu W, Boothroyd JC

Mbio (2024) pp. e0286423-e0286423 [ Pubmed: 38456679 DOI: doi:10.1128/mbio.02864-23 ]

EMD-28126
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3D View
Toxoplasma apical rings
Release date: Oct. 11, 2023
Resolution: 59.67 Å
EM Method: Subtomogram averaging

Sun SY, Segev-Zarko L-, Pintilie GD, Kim CY, Staggers SR, Schmid MF, Egan ES, Chiu W, Boothroyd JC

Mbio (2024) pp. e0286423-e0286423 [ Pubmed: 38456679 DOI: doi:10.1128/mbio.02864-23 ]

EMD-34050
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rT66 Alt A-form scaffold xover asymmetry
Release date: Aug. 9, 2023
Resolution: 20.0 Å
EM Method: Single-particle

Parsons M, Allan M, Li S, Shepherd T, Ratanalert S, Zhang K, Pullen K, Chiu W, Rouskin S, Bathe M

To Be Published

EMD-34051
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rT66 Hybrid-form
Release date: Aug. 9, 2023
Resolution: 21.0 Å
EM Method: Single-particle

Parsons M, Allan M, Li S, Shepherd T, Ratanalert S, Zhang K, Pullen K, Chiu W, Rouskin S, Bathe M

To Be Published

EMD-34058
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rO44 A-form staple xover asymmetry
Release date: Feb. 8, 2023
Resolution: 17.0 Å
EM Method: Single-particle

Parsons MF, Allan MF, Li S, Shepherd TR, Ratanalert S, Zhang K, Pullen KM, Chiu W, Rouskin S, Bathe M

Nat Commun (2023) 14 pp. 382-382 [ DOI: doi:10.1038/s41467-023-36156-1 Pubmed: 36693871 ]

Sort by: Download
Showing 1 - 10 of 79. Page 1 of 8
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [79]

Current status

  • REL [79]

Sample type

  • Complex [62]
  • Protein [44]
  • Ligand [20]
  • RNA [18]
  • Cellular component [9]
  • Cell [6]
  • Virus [2]

Organism

  • Homo sapiens [29]
  • Helicobacter pylori [8]
  • Tetrahymena thermophila [8]
  • Saccharopolyspora erythraea [6]
  • Enterobacteria phage m13 [6]
  • Toxoplasma gondii [5]
  • Plasmodium falciparum [4]
  • Severe acute respiratory syndrome coronavirus [3]
  • Pseudomonas aeruginosa [3]
  • Toxoplasma gondii [3]
  • Streptococcus thermophilus [2]
  • Mycobacterium sp. (strain mcs) [2]
  • Saccharomyces cerevisiae [2]
  • Saccharomyces cerevisiae [2]
  • Mus musculus [1]
  • Human herpesvirus 3 [1]
  • Salmonella phage p22 [1]
  • Meiothermus taiwanensis [1]
  • Singapore grouper iridovirus [1]
  • Human coronavirus nl63 [1]
  • Toxoplasma gondii [1]
  • Dictyostelium discoideum [1]

EM Method

  • Single-particle [64]
  • Subtomogram averaging [8]
  • Tomography [7]

Resolution

  • < 2Å [4]
  • ≥ 2Å and < 3Å [9]
  • ≥ 3Å and < 4Å [27]
  • ≥ 4Å and < 5Å [6]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [8]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [4]
  • ≥ 30Å [3]

Model molecular weight

  • 0-50 kDa [3]
  • 100-250 kDa [7]
  • 250-500 kDa [20]
  • 500-1000 kDa [16]
  • 1-2 MDa [7]
  • 2-5 MDa [2]

Release Date

  • 2024 [5]
  • 2023 [8]
  • 2022 [18]
  • 2021 [11]
  • 2020 [13]
  • 2019 [21]
  • 2016 [3]

Author by name

  • Chiu W [78]
  • Li S [48]
  • Zhang K [48]
  • Pintilie GD [41]
  • Schmid MF [35]
  • Pintilie G [33]
  • Roh SH [20]
  • Boothroyd JC [13]
  • Sun SY [13]
  • Das R [12]
  • Frydman J [11]
  • Gestaut D [11]
  • Leitner A [11]
  • Ma B [11]
  • Mou TC [11]
  • Su Z [11]
  • Chen M [8]
  • Kappel K [8]
  • Ludtke SJ [8]
  • Palo MZ [8]
  • Segev-zarko LA [8]
  • Aebersold R [7]
  • Joachimiak LA [7]
  • Walzthoeni T [7]
  • Au SWN [6]
  • Bathe M [6]
  • Cogan DP [6]
  • Craik CS [6]
  • Gao Y [6]
  • Khosla C [6]
  • Li X [6]
  • Ratanalert S [6]
  • Rouskin S [6]
  • Zhang H [6]
  • Zhang Q [6]
  • Van Den Bedem H [6]
  • Egan ES [5]
  • Gestaut DR [5]
  • Huang Z [5]
  • Kim CY [5]
  • Segev-zarko L [5]
  • Segev-zarko L- [5]
  • Staggers SR [5]
  • Zhu Y [5]
  • Allan MF [4]
  • Collier M [4]
  • Palo M [4]
  • Park J [4]
  • Parsons MF [4]
  • Pullen KM [4]
  • Rangan R [4]
  • Shepherd TR [4]
  • Zhang X [4]
  • Zhao Y [4]
  • Chen DH [3]
  • Jakana J [3]
  • Wang S [3]
  • Allan M [2]
  • Baric RS [2]
  • Bernardin-souibgui C [2]
  • Case DA [2]
  • Chae HD [2]
  • Chen S [2]
  • Chin JA [2]
  • Chipot C [2]
  • D Souza V [2]
  • Dai W [2]
  • Darrow MC [2]
  • Dror RO [2]
  • Galaz-montoya JG [2]
  • Glenn JS [2]
  • Guan X [2]
  • Guo M [2]
  • Hagey RJ [2]
  • Hameedi MA [2]
  • Haslecker R [2]
  • Hecksel CW [2]
  • Herrell E [2]
  • Horikoshi N [2]
  • Hou YJ [2]
  • Jeong BC [2]
  • Khan YA [2]
  • Kladwang W [2]
  • Kretsch R [2]
  • Kretsch RC [2]
  • Luo B [2]
  • Ma Z [2]
  • Mitchell PG [2]
  • Nam Y [2]
  • Parsons M [2]
  • Partin A [2]
  • Partin AC [2]
  • Pham EA [2]
  • Powers AS [2]
  • Pullen K [2]
  • Sakamoto KM [2]
  • Sheahan TP [2]
  • Shekhar M [2]
  • Shepherd T [2]
  • Singharoy A [2]

Author by ORCID

  • Chiu W [74]
  • Zhang K [33]
  • Li S [31]
  • Schmid MF [30]
  • Pintilie GD [27]
  • Pintilie G [18]
  • Sun SY [13]
  • Boothroyd JC [13]
  • Das R [11]
  • Su Z [11]
  • Frydman J [11]
  • Ludtke SJ [8]
  • Kappel K [8]
  • Chen M [8]
  • Roh SH [8]
  • Segev-zarko LA [8]
  • Palo MZ [8]
  • Leitner A [7]
  • Khosla C [6]
  • Craik CS [6]
  • Au SWN [6]
  • Li X [6]
  • Van Den Bedem H [6]
  • Cogan DP [6]
  • Staggers SR [5]
  • Segev-zarko L- [5]
  • Ratanalert S [4]
  • Pullen KM [4]
  • Bathe M [4]
  • Park J [4]
  • Parsons MF [4]
  • Zhao Y [4]
  • Rangan R [3]
  • Huang Z [3]
  • Wang S [3]
  • Wakatsuki S [2]
  • Darrow MC [2]
  • Shekhar M [2]
  • Galaz-montoya JG [2]
  • Jeong BC [2]
  • Suomivuori CM [2]
  • Wilkens S [2]
  • Mitchell PG [2]
  • Herrell E [2]
  • Dror RO [2]
  • Kretsch RC [2]
  • Nam Y [2]
  • Singharoy A [2]
  • Chipot C [2]
  • Luo B [2]
  • Khan YA [2]
  • Sakamoto KM [2]
  • Arvin AM [1]
  • Baric RS [1]
  • Bushnell DA [1]
  • Hsieh KY [1]
  • Sheahan TP [1]
  • Hagey RJ [1]
  • Chmielewski D [1]
  • Oliver SL [1]
  • Chen DH [1]
  • Kretsch R [1]
  • Pham EA [1]
  • Hou YJ [1]
  • Zheludev IN [1]
  • Simmons G [1]
  • Wu J [1]
  • Jin J [1]
  • Wu MT [1]

Journal

  • PNAS [21]
  • CELL [11]
  • NAT COMMUN [7]
  • SCIENCE [6]
  • CELL RES [5]
  • MBIO [5]
  • BIORXIV [4]
  • NATURE [4]
  • ACS CENT SCI [3]
  • NAT METHODS [3]
  • MICROSC MICROANAL [2]
  • MOL CELL [2]
  • SCI ADV [2]
  • TO BE PUBLISHED [2]
  • BIOPHYS J [1]
  • J BIOL CHEM [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [28]
  • RELION [24]
  • EMAN2 [13]
  • CTFFIND [8]
  • IMOD [6]
  • MPSA [2]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [52]
  • JEOL 3200FSC [8]
  • FEI TALOS ARCTICA [6]
  • FEI TECNAI ARCTICA [6]
  • TFS TALOS [3]
  • JEOL 2100 [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [77]
  • LAB6 [2]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [55]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • GATAN K3 6K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN ULTRASCAN 10000 10K X 10K [1]

External links

  • PDB [55]
  • UniProt [44]
  • Gene Ontology [43]
  • InterPro [43]
  • PDBe-Kb [43]
  • Pfam [43]
  • AlphaFold DB [40]
  • ChEBI [17]
  • Complex Portal [17]
  • ChEMBL [16]
  • DrugBank [16]
  • EMPIAR [13]
  • SCOP2 [2]