Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"R01AI089728"

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [6]
  • Protein [6]

Organism

  • Severe acute respiratory syndrome coronavirus [3]
  • Mus musculus [1]
  • Avian coronavirus [1]
  • Murine coronavirus [1]
  • Coronavirus hku15 [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 250-500 kDa [6]

Release Date

  • 2022 [3]
  • 2020 [1]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Li F [6]
  • Liu B [3]
  • Liu C [3]
  • Shang J [3]
  • Yang Y [3]
  • Ye G [3]
  • Geng Q [2]
  • Zhang W [2]
  • Zheng Y [2]
  • Auerbach A [1]
  • Baric R [1]
  • Du L [1]
  • Gully K [1]
  • Luo C [1]
  • Peng G [1]
  • Tai W [1]
  • Wan Y [1]
  • Wan YS [1]
  • Yount B [1]
  • Zhou Y [1]

Author by ORCID

  • Li F [6]
  • Ye G [3]
  • Liu B [3]
  • Shang J [3]
  • Yang Y [2]
  • Zhang W [2]
  • Geng Q [2]
  • Gully K [1]
  • Baric R [1]
  • Auerbach A [1]
  • Peng G [1]
  • Tai W [1]
  • Wan Y [1]
  • Liu C [1]

Journal

  • NAT COMMUN [3]
  • PLOS PATHOG [2]
  • J VIROL [1]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • Complex Portal [3]
  • SCOP2 [2]
  • AlphaFold DB [1]
Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-25887
Download Map
3D View
Omicron spike at 3.0 A open form
Release date: March 9, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7tgw
Q-score: 0.471

Ye G, Liu B, Li F

Nat Commun (2022) 13 pp. 1214-1214 [ Pubmed: 35241675 DOI: doi:10.1038/s41467-022-28882-9 ]

EMD-25888
Download Map
3D View
Prototypic SARS-CoV-2 G614 spike open form
Release date: March 9, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tgx
Q-score: 0.468

Ye G, Liu B, Li F

Nat Commun (2022) 13 pp. 1214-1214 [ Pubmed: 35241675 DOI: doi:10.1038/s41467-022-28882-9 ]

EMD-25889
Download Map
3D View
Prototypic SARS-CoV-2 G614 spike closed form
Release date: March 9, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7tgy
Q-score: 0.488

Ye G, Liu B, Li F

Nat Commun (2022) 13 pp. 1214-1214 [ Pubmed: 35241675 DOI: doi:10.1038/s41467-022-28882-9 ]

EMD-21377
Download Map
3D View
Cryo-electron microscopy structure of mouse coronavirus spike protein complexed with its murine receptor
Release date: March 4, 2020
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 6vsj
Q-score: 0.401

Shang J, Wan Y, Liu C, Yount B, Gully K, Yang Y, Auerbach A, Peng G, Baric R, Li F

PLoS Pathog (2020) 16 pp. e1008392-e1008392 [ Pubmed: 32150576 DOI: doi:10.1371/journal.ppat.1008392 ]

EMD-7631
Download Map
3D View
Cryo-electron microscopy structure of infectious bronchitis coronavirus spike protein
Release date: April 18, 2018
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 6cv0
Q-score: 0.42

Shang J, Zheng Y, Yang Y, Liu C, Geng Q, Luo C, Zhang W, Li F

PLoS Pathog (2018) 14 pp. e1007009-e1007009 [ Pubmed: 29684066 DOI: doi:10.1371/journal.ppat.1007009 ]

EMD-7063
Download Map
3D View
Cryo-electron microscopy structure of porcine delta coronavirus spike protein in the pre-fusion state
Release date: Oct. 25, 2017
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6b7n
Q-score: 0.447

Shang J, Zheng Y, Yang Y, Liu C, Geng Q, Tai W, Du L, Zhou Y, Zhang W, Li F

J Virol (2018) 92 [ Pubmed: 29070693 DOI: doi:10.1128/JVI.01556-17 ]

Sort by: Download
Showing 1 - 6 of 6. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [6]

Current status

  • REL [6]

Sample type

  • Complex [6]
  • Ligand [6]
  • Protein [6]

Organism

  • Severe acute respiratory syndrome coronavirus [3]
  • Mus musculus [1]
  • Avian coronavirus [1]
  • Murine coronavirus [1]
  • Coronavirus hku15 [1]

EM Method

  • Single-particle [6]

Resolution

  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 250-500 kDa [6]

Release Date

  • 2022 [3]
  • 2020 [1]
  • 2018 [1]
  • 2017 [1]

Author by name

  • Li F [6]
  • Liu B [3]
  • Liu C [3]
  • Shang J [3]
  • Yang Y [3]
  • Ye G [3]
  • Geng Q [2]
  • Zhang W [2]
  • Zheng Y [2]
  • Auerbach A [1]
  • Baric R [1]
  • Du L [1]
  • Gully K [1]
  • Luo C [1]
  • Peng G [1]
  • Tai W [1]
  • Wan Y [1]
  • Wan YS [1]
  • Yount B [1]
  • Zhou Y [1]

Author by ORCID

  • Li F [6]
  • Ye G [3]
  • Liu B [3]
  • Shang J [3]
  • Yang Y [2]
  • Zhang W [2]
  • Geng Q [2]
  • Gully K [1]
  • Baric R [1]
  • Auerbach A [1]
  • Peng G [1]
  • Tai W [1]
  • Wan Y [1]
  • Liu C [1]

Journal

  • NAT COMMUN [3]
  • PLOS PATHOG [2]
  • J VIROL [1]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [6]

Film or detector model

  • FEI FALCON III 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [3]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • Complex Portal [3]
  • SCOP2 [2]
  • AlphaFold DB [1]