Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"R01 CA132878"

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Complex [16]
  • DNA [16]
  • Protein [16]
  • Ligand [11]

Organism

  • Homo sapiens [16]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [13]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [12]
  • 250-500 kDa [4]

Release Date

  • 2024 [13]
  • 2021 [3]

Author by name

  • Botuyan MV [16]
  • Cui G [16]
  • Hu Q [16]
  • Mer G [16]
  • Zhao D [16]
  • Bhandari J [13]
  • Thompson JR [13]
  • Mer E [3]

Author by ORCID

  • Mer G [16]
  • Botuyan MV [16]
  • Hu Q [13]
  • Bhandari J [13]
  • Mer E [3]
  • Hu Q [3]

Journal

  • MOL CELL [13]
  • NATURE [3]

Software

  • CRYOSPARC [16]
  • RELION [11]

Microscope

  • FEI TITAN KRIOS [16]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [16]

External links

  • AlphaFold DB [16]
  • Gene Ontology [16]
  • InterPro [16]
  • PDB [16]
  • PDBe-Kb [16]
  • Pfam [16]
  • UniProt [16]
  • Complex Portal [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-40610
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c UbcH5c chemically conjugated to histone H2A
Release date: Jan. 17, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8sn2
Q-score: 0.452

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40611
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 1
Release date: Jan. 17, 2024
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8sn3
Q-score: 0.429

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40612
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 2
Release date: Jan. 17, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn4
Q-score: 0.439

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40613
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 3
Release date: Jan. 17, 2024
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sn5
Q-score: 0.41

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40614
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 4
Release date: Jan. 17, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn6
Q-score: 0.434

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40615
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 5
Release date: Jan. 17, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn7
Q-score: 0.445

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40616
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c Ub UbcH5c chemically conjugated to histone H2A class 6
Release date: Jan. 17, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8sn8
Q-score: 0.443

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40617
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin UbcH5c chemically conjugated to histone H2A class 1
Release date: Jan. 17, 2024
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8sn9
Q-score: 0.424

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-40618
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin UbcH5c chemically conjugated to histone H2A class 2
Release date: Jan. 17, 2024
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8sna
Q-score: 0.405

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

EMD-41706
Download Map
3D View
Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 Class 1
Release date: Jan. 17, 2024
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8txv
Q-score: 0.432

Hu Q, Zhao D, Cui G, Bhandari J, Thompson JR, Botuyan MV, Mer G

Mol Cell (2024) 84 pp. 839-853.e12 [ Pubmed: 38242129 DOI: doi:10.1016/j.molcel.2023.12.036 ]

Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Complex [16]
  • DNA [16]
  • Protein [16]
  • Ligand [11]

Organism

  • Homo sapiens [16]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [13]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [12]
  • 250-500 kDa [4]

Release Date

  • 2024 [13]
  • 2021 [3]

Author by name

  • Botuyan MV [16]
  • Cui G [16]
  • Hu Q [16]
  • Mer G [16]
  • Zhao D [16]
  • Bhandari J [13]
  • Thompson JR [13]
  • Mer E [3]

Author by ORCID

  • Mer G [16]
  • Botuyan MV [16]
  • Hu Q [13]
  • Bhandari J [13]
  • Mer E [3]
  • Hu Q [3]

Journal

  • MOL CELL [13]
  • NATURE [3]

Software

  • CRYOSPARC [16]
  • RELION [11]

Microscope

  • FEI TITAN KRIOS [16]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [16]

External links

  • AlphaFold DB [16]
  • Gene Ontology [16]
  • InterPro [16]
  • PDB [16]
  • PDBe-Kb [16]
  • Pfam [16]
  • UniProt [16]
  • Complex Portal [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]