Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"PJT-156354"

Filter By

Current Database

  • EMDB [39]

Current status

  • REL [39]

Sample type

  • Cellular component [32]
  • Complex [9]
  • Protein [6]
  • Ligand [4]
  • Other [1]

Organism

  • Tetrahymena thermophila [18]
  • Tetrahymena thermophila [16]
  • Bos taurus [3]
  • Chlamydomonas reinhardtii [2]
  • Homo sapiens [2]
  • Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [1]

EM Method

  • Subtomogram averaging [20]
  • Single-particle [18]
  • Tomography [1]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [7]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 500-1000 kDa [1]
  • 2-5 MDa [4]
  • 5-10 MDa [1]

Release Date

  • 2025 [20]
  • 2023 [15]
  • 2021 [1]
  • 2020 [3]

Author by name

  • Bui KH [39]
  • Valente-paterno M [36]
  • Gaertig J [35]
  • Legal T [35]
  • Joachimiak E [34]
  • Parra M [34]
  • Black C [23]
  • Ghanaeian A [21]
  • Wloga D [21]
  • Brouhard G [20]
  • Guha M [20]
  • Nguyen CA [20]
  • Peng W [20]
  • Tam A [20]
  • Black CS [16]
  • Lechtreck K [14]
  • Legal TL [14]
  • Tong M [14]
  • Yang SK [5]
  • Dai D [4]
  • Ichikawa M [4]
  • Kubo S [4]
  • Bechstedt S [3]
  • Khalifa AAZ [3]
  • Mcalear TS [3]
  • Peri K [3]
  • Trempe JF [3]
  • Vargas J [3]
  • Veyron S [3]
  • Ghanaeian AG [1]
  • Janowska M [1]
  • Majhi S [1]
  • Marcotte EM [1]
  • Mccafferty CL [1]
  • Nami B [1]
  • Papoulas O [1]

Author by ORCID

  • Bui KH [19]
  • Black CS [16]
  • Legal T [15]
  • Valente-paterno M [14]
  • Lechtreck K [14]
  • Joachimiak E [14]
  • Gaertig J [14]
  • Tong M [14]
  • Parra M [14]
  • Yang SK [4]
  • Ichikawa M [4]
  • Dai D [4]
  • Khalifa AAZ [3]
  • Mcalear TS [3]
  • Vargas J [3]
  • Kubo S [3]
  • Bechstedt S [3]
  • Veyron S [3]
  • Trempe JF [3]
  • Peri K [3]
  • Black C [3]
  • Majhi S [1]
  • Marcotte EM [1]
  • Mccafferty CL [1]
  • Papoulas O [1]
  • Nami B [1]
  • Ghanaeian A [1]

Journal

  • CURR BIOL [20]
  • J CELL BIOL [14]
  • ELIFE [3]
  • EMBO REP [1]
  • NAT COMMUN [1]

Software

  • RELION [4]
  • SPIDER [4]
  • FREALIGN [3]

Microscope

  • TFS KRIOS [34]
  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [39]

Film or detector model

  • GATAN K3 6K X 4K [35]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [7]
  • AlphaFold DB [6]
  • Gene Ontology [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • InterPro [3]
  • SCOP2 [1]
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Showing 1 - 10 of 39. Page 1 of 4
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EMD-49872
Composite map
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3D View
Ciliary tip central pair
Release date: July 30, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9nw3
Q-score: 0.137

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-70819
Download Map
3D View
13PF microtubule symmetry expansion
Release date: July 30, 2025
Resolution: 5.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 9ot2
Q-score: 0.185

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-70821
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3D View
Tip CP C1 Wild Type
Release date: July 30, 2025
Resolution: 19.48 Å
EM Method: Subtomogram averaging

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-70823
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3D View
Tip CP C2 WT
Release date: July 30, 2025
Resolution: 21.98 Å
EM Method: Subtomogram averaging

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-70829
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3D View
SPEF1 KO Tip CP C1
Release date: July 30, 2025
Resolution: 25.2 Å
EM Method: Subtomogram averaging

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-70830
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3D View
SPEF1 KO Tip CP C2
Release date: July 30, 2025
Resolution: 23.8 Å
EM Method: Subtomogram averaging

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-71226
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3D View
Refinement C1 PF2-3-4
Release date: July 30, 2025
Resolution: 4.1 Å
EM Method: Single-particle

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-71227
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3D View
Refinement C1 PF13-1-2
Release date: July 30, 2025
Resolution: 3.9 Å
EM Method: Single-particle

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-71228
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3D View
Refinement C1 PF4-5-6
Release date: July 30, 2025
Resolution: 4.36 Å
EM Method: Single-particle

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

EMD-71229
Download Map
3D View
Refinement C1 PF6-7-8
Release date: July 30, 2025
Resolution: 4.36 Å
EM Method: Single-particle

Legal T, Joachimiak E, Parra M, Peng W, Tam A, Black C, Guha M, Nguyen CA, Ghanaeian A, Valente-Paterno M, Brouhard G, Gaertig J, Wloga D, Bui KH

Curr Biol (2025) 35 pp. 3404-3417.e6 [ Pubmed: 40651469 DOI: doi:10.1016/j.cub.2025.06.020 ]

Sort by: Download
Showing 1 - 10 of 39. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [39]

Current status

  • REL [39]

Sample type

  • Cellular component [32]
  • Complex [9]
  • Protein [6]
  • Ligand [4]
  • Other [1]

Organism

  • Tetrahymena thermophila [18]
  • Tetrahymena thermophila [16]
  • Bos taurus [3]
  • Chlamydomonas reinhardtii [2]
  • Homo sapiens [2]
  • Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [1]

EM Method

  • Subtomogram averaging [20]
  • Single-particle [18]
  • Tomography [1]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [7]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 500-1000 kDa [1]
  • 2-5 MDa [4]
  • 5-10 MDa [1]

Release Date

  • 2025 [20]
  • 2023 [15]
  • 2021 [1]
  • 2020 [3]

Author by name

  • Bui KH [39]
  • Valente-paterno M [36]
  • Gaertig J [35]
  • Legal T [35]
  • Joachimiak E [34]
  • Parra M [34]
  • Black C [23]
  • Ghanaeian A [21]
  • Wloga D [21]
  • Brouhard G [20]
  • Guha M [20]
  • Nguyen CA [20]
  • Peng W [20]
  • Tam A [20]
  • Black CS [16]
  • Lechtreck K [14]
  • Legal TL [14]
  • Tong M [14]
  • Yang SK [5]
  • Dai D [4]
  • Ichikawa M [4]
  • Kubo S [4]
  • Bechstedt S [3]
  • Khalifa AAZ [3]
  • Mcalear TS [3]
  • Peri K [3]
  • Trempe JF [3]
  • Vargas J [3]
  • Veyron S [3]
  • Ghanaeian AG [1]
  • Janowska M [1]
  • Majhi S [1]
  • Marcotte EM [1]
  • Mccafferty CL [1]
  • Nami B [1]
  • Papoulas O [1]

Author by ORCID

  • Bui KH [19]
  • Black CS [16]
  • Legal T [15]
  • Valente-paterno M [14]
  • Lechtreck K [14]
  • Joachimiak E [14]
  • Gaertig J [14]
  • Tong M [14]
  • Parra M [14]
  • Yang SK [4]
  • Ichikawa M [4]
  • Dai D [4]
  • Khalifa AAZ [3]
  • Mcalear TS [3]
  • Vargas J [3]
  • Kubo S [3]
  • Bechstedt S [3]
  • Veyron S [3]
  • Trempe JF [3]
  • Peri K [3]
  • Black C [3]
  • Majhi S [1]
  • Marcotte EM [1]
  • Mccafferty CL [1]
  • Papoulas O [1]
  • Nami B [1]
  • Ghanaeian A [1]

Journal

  • CURR BIOL [20]
  • J CELL BIOL [14]
  • ELIFE [3]
  • EMBO REP [1]
  • NAT COMMUN [1]

Software

  • RELION [4]
  • SPIDER [4]
  • FREALIGN [3]

Microscope

  • TFS KRIOS [34]
  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [39]

Film or detector model

  • GATAN K3 6K X 4K [35]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [7]
  • AlphaFold DB [6]
  • Gene Ontology [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • InterPro [3]
  • SCOP2 [1]