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grant_code:"P01GM121203"

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Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Cellular component [8]
  • Protein [3]
  • Cell [1]
  • Complex [1]

Organism

  • Toxoplasma gondii [6]
  • Toxoplasma gondii [3]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [7]
  • Tomography [3]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [2]

Release Date

  • 2023 [1]
  • 2022 [9]

Author by name

  • Boothroyd JC [9]
  • Chen M [9]
  • Chiu W [9]
  • Ludtke SJ [9]
  • Segev-zarko LA [9]
  • Sun SY [9]
  • Pintilie GD [8]
  • Schmid MF [8]
  • Segev-zarko L [3]
  • Baker ML [1]
  • Dahlberg PD [1]
  • Egan ES [1]
  • Fan G [1]
  • Kim CY [1]
  • Luisi BF [1]
  • Muyuan MC [1]
  • Pelt DM [1]
  • Serysheva II [1]
  • Sethian JA [1]
  • Shi X [1]
  • Wang Z [1]
  • Yu Z [1]
  • Zhao ZW [1]

Author by ORCID

  • Boothroyd JC [9]
  • Ludtke SJ [9]
  • Chiu W [9]
  • Chen M [9]
  • Segev-zarko LA [9]
  • Sun SY [8]
  • Pintilie GD [8]
  • Schmid MF [8]
  • Egan ES [1]
  • Dahlberg PD [1]
  • Wang Z [1]

Journal

  • PNAS [8]
  • PNAS NEXUS [1]
  • STRUCTURE [1]

Software

  • EMAN2 [7]
  • IMOD [2]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]

External links

  • AlphaFold DB [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
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EMD-28139
Download Map
3D View
Toxoplasma gondii apical complex ionophore stimulated
Release date: March 29, 2023
EM Method: Tomography

Segev-Zarko LA, Dahlberg PD, Sun SY, Pelt DM, Kim CY, Egan ES, Sethian JA, Chiu W, Boothroyd JC

Pnas Nexus (2022) 1 pp. pgac183-pgac183 [ DOI: doi:10.1093/pnasnexus/pgac183 Pubmed: 36329726 ]

EMD-24609
Download Map
3D View
Subnanometer in situ structure of the AcrAB-TolC efflux pump bound with MBX
Release date: Aug. 31, 2022
Resolution: 7.0 Å
EM Method: Subtomogram averaging

Chen M, Shi X, Yu Z, Fan G, Serysheva II, Baker ML, Luisi BF, Ludtke SJ, Wang Z

Structure (2022) 30 pp. 107-113.e3 [ Pubmed: 34506732 DOI: doi:10.1016/j.str.2021.08.008 ]

EMD-26018
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3D View
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
Release date: June 22, 2022
Resolution: 8.4 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7tnq
Q-score: 0.076

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26019
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3D View
Subpellicular microtubule from detergent-extract Toxoplasma gondii cells
Release date: June 22, 2022
Resolution: 6.7 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7tns
Q-score: 0.118

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26020
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3D View
The tubulin-based conoid from detergent-extract Toxoplasma gondii cells
Release date: June 22, 2022
Resolution: 9.3 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7tnt
Q-score: 0.053

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26010
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3D View
The symmetrized subpellicular microtubule map from intact Toxoplasma gondii cells
Release date: March 9, 2022
Resolution: 26.0 Å
EM Method: Subtomogram averaging

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26006
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3D View
3D reconstruction of detergent-extract Toxoplasma gondii cells at the apical end
Release date: March 2, 2022
EM Method: Tomography

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26007
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3D View
Three-dimensional organization of the apical complex in Toxoplasma tachyzoites
Release date: March 2, 2022
EM Method: Tomography

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26008
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3D View
In situ average map of conoid with PCR from intact Toxoplasma gondii cells
Release date: March 2, 2022
Resolution: 46.0 Å
EM Method: Subtomogram averaging

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

EMD-26009
Download Map
3D View
The conoid segment from intact Toxoplasma gondii cells
Release date: March 2, 2022
Resolution: 28.0 Å
EM Method: Subtomogram averaging

Sun SY, Segev-Zarko LA, Chen M, Pintilie GD, Schmid MF, Ludtke SJ, Boothroyd JC, Chiu W

PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2111661119 Pubmed: 35121661 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Cellular component [8]
  • Protein [3]
  • Cell [1]
  • Complex [1]

Organism

  • Toxoplasma gondii [6]
  • Toxoplasma gondii [3]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [7]
  • Tomography [3]

Resolution

  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [2]

Release Date

  • 2023 [1]
  • 2022 [9]

Author by name

  • Boothroyd JC [9]
  • Chen M [9]
  • Chiu W [9]
  • Ludtke SJ [9]
  • Segev-zarko LA [9]
  • Sun SY [9]
  • Pintilie GD [8]
  • Schmid MF [8]
  • Segev-zarko L [3]
  • Baker ML [1]
  • Dahlberg PD [1]
  • Egan ES [1]
  • Fan G [1]
  • Kim CY [1]
  • Luisi BF [1]
  • Muyuan MC [1]
  • Pelt DM [1]
  • Serysheva II [1]
  • Sethian JA [1]
  • Shi X [1]
  • Wang Z [1]
  • Yu Z [1]
  • Zhao ZW [1]

Author by ORCID

  • Boothroyd JC [9]
  • Ludtke SJ [9]
  • Chiu W [9]
  • Chen M [9]
  • Segev-zarko LA [9]
  • Sun SY [8]
  • Pintilie GD [8]
  • Schmid MF [8]
  • Egan ES [1]
  • Dahlberg PD [1]
  • Wang Z [1]

Journal

  • PNAS [8]
  • PNAS NEXUS [1]
  • STRUCTURE [1]

Software

  • EMAN2 [7]
  • IMOD [2]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • TFS TALOS [1]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [10]

External links

  • AlphaFold DB [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]