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grant_code:"MCB- 2123995"

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Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [3]
  • Ligand [3]
  • Protein [3]
  • RNA [3]

Organism

  • Synthetic construct [3]
  • Escherichia coli [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [1]

Model molecular weight

  • 250-500 kDa [3]

Release Date

  • 2023 [3]

Author by name

  • Benner SA [3]
  • Chong J [3]
  • Hoshika S [3]
  • Lyumkis D [3]
  • Oh J [3]
  • Shan Z [3]
  • Wang D [3]
  • Xu J [3]

Author by ORCID

  • Hoshika S [3]
  • Wang D [3]
  • Oh J [3]
  • Lyumkis D [3]
  • Shan Z [3]
  • Xu J [3]

Journal

  • NAT COMMUN [3]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
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EMD-40862
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E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dS-BTP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8sy5
Q-score: 0.552

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ DOI: doi:10.1038/s41467-023-43735-9 Pubmed: 38086811 ]

EMD-40863
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3D View
E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-UTP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8sy6
Q-score: 0.449

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ DOI: doi:10.1038/s41467-023-43735-9 Pubmed: 38086811 ]

EMD-40864
Download Map
3D View
E. coli DNA-directed RNA polymerase transcription elongation complex bound the unnatural dB-STP base pair in the active site
Release date: Dec. 27, 2023
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8sy7
Q-score: 0.522

Oh J, Shan Z, Hoshika S, Xu J, Chong J, Benner SA, Lyumkis D, Wang D

Nat Commun (2023) 14 pp. 8219-8219 [ DOI: doi:10.1038/s41467-023-43735-9 Pubmed: 38086811 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [3]
  • Ligand [3]
  • Protein [3]
  • RNA [3]

Organism

  • Synthetic construct [3]
  • Escherichia coli [3]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [1]

Model molecular weight

  • 250-500 kDa [3]

Release Date

  • 2023 [3]

Author by name

  • Benner SA [3]
  • Chong J [3]
  • Hoshika S [3]
  • Lyumkis D [3]
  • Oh J [3]
  • Shan Z [3]
  • Wang D [3]
  • Xu J [3]

Author by ORCID

  • Hoshika S [3]
  • Wang D [3]
  • Oh J [3]
  • Lyumkis D [3]
  • Shan Z [3]
  • Xu J [3]

Journal

  • NAT COMMUN [3]

Software

  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]