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grant_code:"LM2018127"

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Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Complex [34]
  • Protein [34]
  • RNA [20]
  • Ligand [17]
  • Cellular component [4]
  • Virus [2]

Organism

  • Escherichia coli [15]
  • Mus musculus [9]
  • Klebsiella pneumoniae [4]
  • Escherichia coli [3]
  • Enterovirus a [3]
  • Potato virus y [2]
  • Streptomyces californicus [2]
  • Escherichia coli [2]
  • Synthetic construct [1]
  • Picea abies [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [38]

Resolution

  • < 2Å [9]
  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [3]
  • 500-1000 kDa [7]
  • 1-2 MDa [11]
  • 5-10 MDa [3]

Release Date

  • 2024 [2]
  • 2023 [22]
  • 2022 [10]
  • 2021 [4]

Author by name

  • Novacek J [28]
  • Beckert B [15]
  • Bock LV [15]
  • Crowe-mcauliffe C [15]
  • Grubmuller H [15]
  • Koller TO [15]
  • Morici M [15]
  • Myasnikov AG [15]
  • Paternoga H [15]
  • Wilson DN [15]
  • Pinkas M [13]
  • Joseph DF [9]
  • Kubicek K [9]
  • Malik R [9]
  • Sebesta M [9]
  • Stefl R [9]
  • Svoboda P [9]
  • Zanova M [9]
  • Zapletal D [9]
  • Bernecky C [6]
  • Buccheri V [6]
  • Horvat F [6]
  • Jenickova I [6]
  • Much C [6]
  • O Carroll D [6]
  • Pasulka J [6]
  • Prochazka J [6]
  • Prochazkova M [6]
  • Sedlacek R [6]
  • Taborska E [6]
  • Cesle EE [4]
  • Filimonenko A [4]
  • Kalnins G [4]
  • Tars K [4]
  • Butcher SJ [3]
  • Buttner CR [3]
  • Fuzik T [3]
  • Hynonen MJ [3]
  • Plevka P [3]
  • Sah-teli SK [3]
  • Spurny R [3]
  • Venkatesan R [3]
  • Wierenga RK [3]
  • Benesch JLP [2]
  • Holden E [2]
  • Kavcic L [2]
  • Kezar A [2]
  • Klobucar T [2]
  • Koritnik N [2]
  • Merzel F [2]
  • Podobnik M [2]
  • Vicic Z [2]
  • Znidaric MT [2]
  • Brom T [1]
  • Hamdi F [1]
  • Hofr C [1]
  • Ilik P [1]
  • Ilikova I [1]
  • Janovic T [1]
  • Kastritis PL [1]
  • Kopecny D [1]
  • Kouril R [1]
  • Kyrilis FL [1]
  • Opatikova M [1]
  • Pospisil P [1]
  • Roudnicky P [1]
  • Semchonok DA [1]
  • Stojaspal M [1]
  • Tarkowski P [1]
  • Veverka P [1]
  • Zeljkovic SC [1]

Author by ORCID

  • Novacek J [18]
  • Paternoga H [15]
  • Grubmuller H [15]
  • Morici M [15]
  • Koller TO [15]
  • Myasnikov AG [15]
  • Wilson DN [15]
  • Bock LV [15]
  • Sebesta M [9]
  • Svoboda P [9]
  • Malik R [9]
  • Kubicek K [9]
  • Stefl R [9]
  • Much C [6]
  • Horvat F [6]
  • Taborska E [6]
  • Bernecky C [6]
  • Tars K [4]
  • Kalnins G [4]
  • Cesle EE [4]
  • Butcher SJ [3]
  • Sah-teli SK [3]
  • Zapletal D [3]
  • Fuzik T [3]
  • Zanova M [3]
  • Buttner CR [3]
  • Hynonen MJ [3]
  • Plevka P [3]
  • Podobnik M [2]
  • Benesch JLP [2]
  • Kavcic L [2]
  • Merzel F [2]
  • Vicic Z [2]
  • Koritnik N [2]
  • Kezar A [2]
  • Klobucar T [2]
  • Hofr C [1]
  • Kouril R [1]
  • Pospisil P [1]
  • Kastritis PL [1]
  • Hamdi F [1]
  • Ilikova I [1]
  • Opatikova M [1]
  • Kyrilis FL [1]
  • Kopecny D [1]
  • Roudnicky P [1]
  • Tarkowski P [1]
  • Ilik P [1]
  • Semchonok DA [1]
  • Veverka P [1]

Journal

  • NAT STRUCT MOL BIOL [15]
  • MOL CELL [6]
  • PROTEIN SCI [4]
  • COMMUN BIOL [3]
  • STRUCTURE [3]
  • TO BE PUBLISHED [3]
  • COMMUN CHEM [2]
  • COMPUT STRUCT BIOTECHNOL J [1]
  • NAT PLANTS [1]

Software

  • CRYOSPARC [14]
  • RELION [10]
  • CTFFIND [4]

Microscope

  • FEI TITAN KRIOS [30]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]
  • TFS GLACIOS [1]
  • TFS TALOS F200C [1]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI FALCON IV 4K X 4K [9]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • FEI CETA 4K X 4K [1]

External links

  • PDB [30]
  • UniProt [30]
  • Gene Ontology [28]
  • InterPro [28]
  • PDBe-Kb [28]
  • Pfam [28]
  • AlphaFold DB [25]
  • Complex Portal [18]
  • ChEBI [17]
  • ChEMBL [17]
  • DrugBank [17]
  • EMPIAR [2]
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Showing 1 - 10 of 38. Page 1 of 4
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EMD-17062
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Raw data
EMPIAR-11549
Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Release date: Jan. 24, 2024
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8opj
Q-score: 0.421

Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M

Commun Chem (2024) 7 pp. 14-14 [ DOI: doi:10.1038/s42004-024-01100-x Pubmed: 38233506 ]

EMD-17063
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3D View
Raw data
EMPIAR-11549
Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation
Release date: Jan. 24, 2024
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8opk
Q-score: 0.428

Kavcic L, Kezar A, Koritnik N, Znidaric MT, Klobucar T, Vicic Z, Merzel F, Holden E, Benesch JLP, Podobnik M

Commun Chem (2024) 7 pp. 14-14 [ DOI: doi:10.1038/s42004-024-01100-x Pubmed: 38233506 ]

EMD-16520
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Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Release date: Aug. 2, 2023
Resolution: 2.06 Å
EM Method: Single-particle
Fitted PDBs: 8ca7
Q-score: 0.666

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16620
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Eravacycline bound to the 30S head
Release date: Aug. 2, 2023
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8cf8
Q-score: 0.687

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16652
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Tiamulin bound to the 50S subunit
Release date: Aug. 2, 2023
Resolution: 1.66 Å
EM Method: Single-particle
Fitted PDBs: 8cgv
Q-score: 0.807

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16389
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Cryo-EM structure of photosystem II C2S2 supercomplex from Norway spruce Picea babies at 2.8 Angstrom resolution
Release date: July 26, 2023
Resolution: 2.785 Å
EM Method: Single-particle
Fitted PDBs: 8c29
Q-score: 0.594

Opatikova M, Semchonok DA, Kopecny D, Ilik P, Pospisil P, Ilikova I, Roudnicky P, Zeljkovic SC, Tarkowski P, Kyrilis FL, Hamdi F, Kastritis PL, Kouril R

Nat Plants (2023) 9 pp. 1359-1369 [ Pubmed: 37550369 DOI: doi:10.1038/s41477-023-01483-0 ]

EMD-16526
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Streptomycin and Hygromycin B bound to the 30S body
Release date: July 26, 2023
Resolution: 2.08 Å
EM Method: Single-particle
Fitted PDBs: 8cai
Q-score: 0.698

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16530
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Evernimicin bound to the 50S subunit
Release date: July 26, 2023
Resolution: 1.86 Å
EM Method: Single-particle
Fitted PDBs: 8cam
Q-score: 0.731

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16536
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empty 30S head
Release date: July 26, 2023
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 8caz
Q-score: 0.701

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

EMD-16613
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Retapamulin and Capreomycin bound to the 50S subunit
Release date: July 26, 2023
Resolution: 1.83 Å
EM Method: Single-particle
Fitted PDBs: 8ceu
Q-score: 0.756

Paternoga H, Crowe-McAuliffe C, Bock LV, Koller TO, Morici M, Beckert B, Myasnikov AG, Grubmuller H, Novacek J, Wilson DN

Nat Struct Mol Biol (2023) 30 pp. 1380-1392 [ DOI: doi:10.1038/s41594-023-01047-y Pubmed: 37550453 ]

Sort by: Download
Showing 1 - 10 of 38. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Complex [34]
  • Protein [34]
  • RNA [20]
  • Ligand [17]
  • Cellular component [4]
  • Virus [2]

Organism

  • Escherichia coli [15]
  • Mus musculus [9]
  • Klebsiella pneumoniae [4]
  • Escherichia coli [3]
  • Enterovirus a [3]
  • Potato virus y [2]
  • Streptomyces californicus [2]
  • Escherichia coli [2]
  • Synthetic construct [1]
  • Picea abies [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [38]

Resolution

  • < 2Å [9]
  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [6]
  • 250-500 kDa [3]
  • 500-1000 kDa [7]
  • 1-2 MDa [11]
  • 5-10 MDa [3]

Release Date

  • 2024 [2]
  • 2023 [22]
  • 2022 [10]
  • 2021 [4]

Author by name

  • Novacek J [28]
  • Beckert B [15]
  • Bock LV [15]
  • Crowe-mcauliffe C [15]
  • Grubmuller H [15]
  • Koller TO [15]
  • Morici M [15]
  • Myasnikov AG [15]
  • Paternoga H [15]
  • Wilson DN [15]
  • Pinkas M [13]
  • Joseph DF [9]
  • Kubicek K [9]
  • Malik R [9]
  • Sebesta M [9]
  • Stefl R [9]
  • Svoboda P [9]
  • Zanova M [9]
  • Zapletal D [9]
  • Bernecky C [6]
  • Buccheri V [6]
  • Horvat F [6]
  • Jenickova I [6]
  • Much C [6]
  • O Carroll D [6]
  • Pasulka J [6]
  • Prochazka J [6]
  • Prochazkova M [6]
  • Sedlacek R [6]
  • Taborska E [6]
  • Cesle EE [4]
  • Filimonenko A [4]
  • Kalnins G [4]
  • Tars K [4]
  • Butcher SJ [3]
  • Buttner CR [3]
  • Fuzik T [3]
  • Hynonen MJ [3]
  • Plevka P [3]
  • Sah-teli SK [3]
  • Spurny R [3]
  • Venkatesan R [3]
  • Wierenga RK [3]
  • Benesch JLP [2]
  • Holden E [2]
  • Kavcic L [2]
  • Kezar A [2]
  • Klobucar T [2]
  • Koritnik N [2]
  • Merzel F [2]
  • Podobnik M [2]
  • Vicic Z [2]
  • Znidaric MT [2]
  • Brom T [1]
  • Hamdi F [1]
  • Hofr C [1]
  • Ilik P [1]
  • Ilikova I [1]
  • Janovic T [1]
  • Kastritis PL [1]
  • Kopecny D [1]
  • Kouril R [1]
  • Kyrilis FL [1]
  • Opatikova M [1]
  • Pospisil P [1]
  • Roudnicky P [1]
  • Semchonok DA [1]
  • Stojaspal M [1]
  • Tarkowski P [1]
  • Veverka P [1]
  • Zeljkovic SC [1]

Author by ORCID

  • Novacek J [18]
  • Paternoga H [15]
  • Grubmuller H [15]
  • Morici M [15]
  • Koller TO [15]
  • Myasnikov AG [15]
  • Wilson DN [15]
  • Bock LV [15]
  • Sebesta M [9]
  • Svoboda P [9]
  • Malik R [9]
  • Kubicek K [9]
  • Stefl R [9]
  • Much C [6]
  • Horvat F [6]
  • Taborska E [6]
  • Bernecky C [6]
  • Tars K [4]
  • Kalnins G [4]
  • Cesle EE [4]
  • Butcher SJ [3]
  • Sah-teli SK [3]
  • Zapletal D [3]
  • Fuzik T [3]
  • Zanova M [3]
  • Buttner CR [3]
  • Hynonen MJ [3]
  • Plevka P [3]
  • Podobnik M [2]
  • Benesch JLP [2]
  • Kavcic L [2]
  • Merzel F [2]
  • Vicic Z [2]
  • Koritnik N [2]
  • Kezar A [2]
  • Klobucar T [2]
  • Hofr C [1]
  • Kouril R [1]
  • Pospisil P [1]
  • Kastritis PL [1]
  • Hamdi F [1]
  • Ilikova I [1]
  • Opatikova M [1]
  • Kyrilis FL [1]
  • Kopecny D [1]
  • Roudnicky P [1]
  • Tarkowski P [1]
  • Ilik P [1]
  • Semchonok DA [1]
  • Veverka P [1]

Journal

  • NAT STRUCT MOL BIOL [15]
  • MOL CELL [6]
  • PROTEIN SCI [4]
  • COMMUN BIOL [3]
  • STRUCTURE [3]
  • TO BE PUBLISHED [3]
  • COMMUN CHEM [2]
  • COMPUT STRUCT BIOTECHNOL J [1]
  • NAT PLANTS [1]

Software

  • CRYOSPARC [14]
  • RELION [10]
  • CTFFIND [4]

Microscope

  • FEI TITAN KRIOS [30]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]
  • TFS GLACIOS [1]
  • TFS TALOS F200C [1]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI FALCON IV 4K X 4K [9]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • FEI FALCON III 4K X 4K [5]
  • FEI FALCON II 4K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [3]
  • FEI CETA 4K X 4K [1]

External links

  • PDB [30]
  • UniProt [30]
  • Gene Ontology [28]
  • InterPro [28]
  • PDBe-Kb [28]
  • Pfam [28]
  • AlphaFold DB [25]
  • Complex Portal [18]
  • ChEBI [17]
  • ChEMBL [17]
  • DrugBank [17]
  • EMPIAR [2]