Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"JPMXP09A21OS0008"

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Ligand [5]
  • Protein [5]

Organism

  • Thermus thermophilus [5]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 250-500 kDa [5]

Release Date

  • 2023 [5]

Author by name

  • Kishikawa J [5]
  • Kishikawa JI [5]
  • Mitsuoka K [5]
  • Nakanishi A [5]
  • Yokoyama K [5]

Author by ORCID

  • Nakanishi A [5]
  • Mitsuoka K [5]
  • Kishikawa JI [5]

Journal

  • J BIOL CHEM [5]

Software

  • CRYOSPARC [5]
  • RELION [5]

Microscope

  • FEI TITAN KRIOS [3]
  • JEOL CRYO ARM 300 [2]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [5]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]
  • ChEMBL [4]
Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-34362
Download Map
3D View
1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Release date: Jan. 25, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gxu
Q-score: 0.582

Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K

J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]

EMD-34363
Download Map
3D View
2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus
Release date: Jan. 25, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gxw
Q-score: 0.539

Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K

J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]

EMD-34364
Download Map
3D View
3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus.
Release date: Jan. 25, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gxx
Q-score: 0.506

Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K

J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]

EMD-34365
Download Map
3D View
2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus.
Release date: Jan. 25, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gxy
Q-score: 0.56

Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K

J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]

EMD-34366
Download Map
3D View
1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus.
Release date: Jan. 25, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gxz
Q-score: 0.488

Nakanishi A, Kishikawa JI, Mitsuoka K, Yokoyama K

J Biol Chem (2023) 299 pp. 102884-102884 [ DOI: doi:10.1016/j.jbc.2023.102884 Pubmed: 36626983 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Complex [5]
  • Ligand [5]
  • Protein [5]

Organism

  • Thermus thermophilus [5]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [2]

Model molecular weight

  • 250-500 kDa [5]

Release Date

  • 2023 [5]

Author by name

  • Kishikawa J [5]
  • Kishikawa JI [5]
  • Mitsuoka K [5]
  • Nakanishi A [5]
  • Yokoyama K [5]

Author by ORCID

  • Nakanishi A [5]
  • Mitsuoka K [5]
  • Kishikawa JI [5]

Journal

  • J BIOL CHEM [5]

Software

  • CRYOSPARC [5]
  • RELION [5]

Microscope

  • FEI TITAN KRIOS [3]
  • JEOL CRYO ARM 300 [2]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [5]

External links

  • AlphaFold DB [5]
  • ChEBI [5]
  • DrugBank [5]
  • Gene Ontology [5]
  • InterPro [5]
  • PDB [5]
  • PDBe-Kb [5]
  • Pfam [5]
  • UniProt [5]
  • ChEMBL [4]