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grant_code:"JPMJCR20E1"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [5]
  • Ligand [4]

Organism

  • Spinacia oleracea [4]
  • Trachydiscus minutus [1]
  • Thalassiosira pseudonana [1]
  • Ostreococcus tauri [1]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [2]

Release Date

  • 2025 [2]
  • 2024 [5]

Author by name

  • Kurisu G [7]
  • Fujii R [6]
  • Miyata T [6]
  • Namba K [6]
  • Seki S [6]
  • Tanaka H [6]
  • Norioka N [4]
  • Bina D [1]
  • Demulder M [1]
  • Engel BD [1]
  • Finazzi G [1]
  • Flori S [1]
  • Gallet B [1]
  • Genji K [1]
  • Gerle C [1]
  • Hideaki T [1]
  • Ishii A [1]
  • Jouneau PH [1]
  • Kawamoto A [1]
  • Keiichi N [1]
  • Kim E [1]
  • Kubota M [1]
  • Lamm L [1]
  • Litvin R [1]
  • Matsuda Y [1]
  • Matsui H [1]
  • Minagawa J [1]
  • Morishima N [1]
  • Nawaly H [1]
  • Okubo R [1]
  • Ota T [1]
  • Polivka T [1]
  • Righetto RD [1]
  • Ritsuko F [1]
  • Shimakawa G [1]
  • Soichiro S [1]
  • Tanaka A [1]
  • Tohda R [1]
  • Tomoko M [1]
  • Tsuji Y [1]
  • Uwizeye C [1]
  • Wietrzynski W [1]

Author by ORCID

  • Kurisu G [5]
  • Fujii R [5]
  • Namba K [5]
  • Seki S [5]
  • Litvin R [1]
  • Engel BD [1]
  • Minagawa J [1]
  • Genji K [1]
  • Miyata T [1]
  • Tomoko M [1]
  • Demulder M [1]
  • Polivka T [1]
  • Gerle C [1]
  • Kawamoto A [1]
  • Bina D [1]
  • Ritsuko F [1]
  • Hideaki T [1]
  • Tanaka H [1]
  • Keiichi N [1]
  • Kim E [1]
  • Flori S [1]
  • Soichiro S [1]
  • Kubota M [1]
  • Ishii A [1]

Journal

  • PNAS NEXUS [4]
  • TO BE PUBLISHED [2]
  • CELL [1]

Software

  • CRYOSPARC [6]
  • RELION [1]

Microscope

  • JEOL CRYO ARM 300 [6]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [7]

External links

  • PDB [5]
  • AlphaFold DB [4]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • UniProt [4]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [2]
  • EMPIAR [1]
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Showing 1 - 7 of 7. Page 1 of 1
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EMD-63799
Download Map
3D View
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a rVCP from Trachydiscus minutus at 2.4 angstrom
Release date: Dec. 31, 2025
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 9mcc
Q-score: 0.658

Seki S, Litvin R, Bina D, Miyata T, Tanaka H, Namba K, Kurisu G, Polivka T, Fujii R

To Be Published

EMD-64036
Download Map
3D View
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Release date: Dec. 31, 2025
Resolution: 1.94 Å
EM Method: Single-particle
Fitted PDBs: 9uc6
Q-score: 0.77

Soichiro S, Kubota M, Ishii A, Kim E, Tomoko M, Hideaki T, Keiichi N, Genji K, Minagawa J, Ritsuko F

To Be Published

EMD-38825
Download Map
3D View
Cryo-EM structure of Light-harvesting complex from Spinacia oleracea
Release date: Nov. 20, 2024
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 8y15
Q-score: 0.709

Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R

Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]

EMD-39192
Download Map
3D View
Cryo-EM structure of in vitro reconstituted Light-harvesting complex II trimer
Release date: Nov. 20, 2024
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8yee
Q-score: 0.678

Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R

Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]

EMD-39304
Download Map
3D View
Cryo-EM structure of light-harvesting complex II with C1 symmetry
Release date: Nov. 20, 2024
Resolution: 2.32 Å
EM Method: Single-particle

Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R

Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]

EMD-39305
Download Map
3D View
Cryo-EM structure of in vitro reconstituted LHCII with C1 symmetry
Release date: Nov. 20, 2024
Resolution: 2.57 Å
EM Method: Single-particle

Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R

Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ Pubmed: 39346626 DOI: doi:10.1093/pnasnexus/pgae405 ]

EMD-37751
Download Map
3D View
Raw data
EMPIAR-11724
Cryo-EM structure of T. pseudonana PyShell helical tube
Release date: Oct. 9, 2024
Resolution: 2.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 8wqp
Q-score: 0.64

Shimakawa G, Demulder M, Flori S, Kawamoto A, Tsuji Y, Nawaly H, Tanaka A, Tohda R, Ota T, Matsui H, Morishima N, Okubo R, Wietrzynski W, Lamm L, Righetto RD, Uwizeye C, Gallet B, Jouneau PH, Gerle C, Kurisu G, Finazzi G, Engel BD, Matsuda Y

Cell (2024) 187 pp. 5919- [ Pubmed: 39357521 DOI: doi:10.1016/j.cell.2024.09.013 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [5]
  • Ligand [4]

Organism

  • Spinacia oleracea [4]
  • Trachydiscus minutus [1]
  • Thalassiosira pseudonana [1]
  • Ostreococcus tauri [1]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [6]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [2]

Release Date

  • 2025 [2]
  • 2024 [5]

Author by name

  • Kurisu G [7]
  • Fujii R [6]
  • Miyata T [6]
  • Namba K [6]
  • Seki S [6]
  • Tanaka H [6]
  • Norioka N [4]
  • Bina D [1]
  • Demulder M [1]
  • Engel BD [1]
  • Finazzi G [1]
  • Flori S [1]
  • Gallet B [1]
  • Genji K [1]
  • Gerle C [1]
  • Hideaki T [1]
  • Ishii A [1]
  • Jouneau PH [1]
  • Kawamoto A [1]
  • Keiichi N [1]
  • Kim E [1]
  • Kubota M [1]
  • Lamm L [1]
  • Litvin R [1]
  • Matsuda Y [1]
  • Matsui H [1]
  • Minagawa J [1]
  • Morishima N [1]
  • Nawaly H [1]
  • Okubo R [1]
  • Ota T [1]
  • Polivka T [1]
  • Righetto RD [1]
  • Ritsuko F [1]
  • Shimakawa G [1]
  • Soichiro S [1]
  • Tanaka A [1]
  • Tohda R [1]
  • Tomoko M [1]
  • Tsuji Y [1]
  • Uwizeye C [1]
  • Wietrzynski W [1]

Author by ORCID

  • Kurisu G [5]
  • Fujii R [5]
  • Namba K [5]
  • Seki S [5]
  • Litvin R [1]
  • Engel BD [1]
  • Minagawa J [1]
  • Genji K [1]
  • Miyata T [1]
  • Tomoko M [1]
  • Demulder M [1]
  • Polivka T [1]
  • Gerle C [1]
  • Kawamoto A [1]
  • Bina D [1]
  • Ritsuko F [1]
  • Hideaki T [1]
  • Tanaka H [1]
  • Keiichi N [1]
  • Kim E [1]
  • Flori S [1]
  • Soichiro S [1]
  • Kubota M [1]
  • Ishii A [1]

Journal

  • PNAS NEXUS [4]
  • TO BE PUBLISHED [2]
  • CELL [1]

Software

  • CRYOSPARC [6]
  • RELION [1]

Microscope

  • JEOL CRYO ARM 300 [6]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [7]

External links

  • PDB [5]
  • AlphaFold DB [4]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
  • UniProt [4]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [2]
  • EMPIAR [1]