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Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Complex [16]
  • Protein [8]
  • DNA [5]
  • RNA [5]
  • Ligand [3]
  • Other [1]

Organism

  • Streptococcus pyogenes [12]
  • Streptococcus pyogenes [5]
  • Murine leukemia virus [4]
  • Guillardia theta [3]
  • Guillardia theta [2]
  • Deinococcus radiodurans [1]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [4]

Release Date

  • 2025 [8]
  • 2024 [8]

Author by name

  • Nureki O [16]
  • Hirano H [13]
  • Hoki M [13]
  • Itoh Y [13]
  • Nakagawa R [13]
  • Omura SN [13]
  • Shuto Y [13]
  • Zhang F [13]
  • Zhu S [13]
  • Hisato H [8]
  • Mizuki H [8]
  • Satoshi NO [8]
  • Yuzuru I [8]
  • Furutani Y [3]
  • Hososhima S [3]
  • Iida W [3]
  • Kandori H [3]
  • Katayama K [3]
  • Nakamura T [3]
  • Oda K [3]
  • Sano FK [3]
  • Shigemura S [3]
  • Shihoya W [3]
  • Sugimoto T [3]
  • Tanaka T [3]
  • Tsunoda SP [3]
  • Uchihashi T [3]
  • Yamashita Y [3]
  • Osamu N [1]
  • Ryoya N [1]
  • Shuto O [1]
  • Yutaro S [1]

Author by ORCID

  • Itoh Y [13]
  • Zhang F [13]
  • Nureki O [13]
  • Omura SN [13]
  • Shuto Y [13]
  • Tanaka T [3]
  • Sano FK [3]
  • Tsunoda SP [3]

Journal

  • NATURE [13]
  • MOL CELL [3]

Software

  • CRYOSPARC [3]
  • RELION [2]

Microscope

  • FEI TITAN KRIOS [16]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • AlphaFold DB [8]
  • Gene Ontology [8]
  • InterPro [8]
  • PDB [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
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EMD-39306
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex termination overall map
Release date: Jan. 15, 2025
Resolution: 3.0 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39307
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex termination focused map
Release date: Jan. 15, 2025
Resolution: 3.48 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39308
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex initiation overall map
Release date: Jan. 15, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39309
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex initiation focused map
Release date: Jan. 15, 2025
Resolution: 4.1 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39314
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex elongation 16-nt overall map
Release date: Jan. 15, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39315
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex elongation 16-nt focused map
Release date: Jan. 15, 2025
Resolution: 6.06 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39316
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex elongation 28-nt overall map
Release date: Jan. 15, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39317
Download Map
3D View
SpCas9-MMLV RT-pegRNA-target DNA complex elongation 28-nt focused map
Release date: Jan. 15, 2025
Resolution: 4.5 Å
EM Method: Single-particle

Shuto Y, Nakagawa R, Zhu S, Hoki M, Omura SN, Hirano H, Itoh Y, Zhang F, Nureki O

Nature (2024) 631 pp. 224-231 [ Pubmed: 38811740 DOI: doi:10.1038/s41586-024-07497-8 ]

EMD-39197
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3D View
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Release date: Sept. 4, 2024
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8yej
Q-score: 0.57

Tanaka T, Hososhima S, Yamashita Y, Sugimoto T, Nakamura T, Shigemura S, Iida W, Sano FK, Oda K, Uchihashi T, Katayama K, Furutani Y, Tsunoda SP, Shihoya W, Kandori H, Nureki O

Mol Cell (2024) 84 pp. 3530-3544.e6 [ DOI: doi:10.1016/j.molcel.2024.08.016 Pubmed: 39232582 ]

EMD-39198
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3D View
Cryo-EM structure of the channelrhodopsin GtCCR2
Release date: Sept. 4, 2024
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 8yek
Q-score: 0.564

Tanaka T, Hososhima S, Yamashita Y, Sugimoto T, Nakamura T, Shigemura S, Iida W, Sano FK, Oda K, Uchihashi T, Katayama K, Furutani Y, Tsunoda SP, Shihoya W, Kandori H, Nureki O

Mol Cell (2024) 84 pp. 3530-3544.e6 [ DOI: doi:10.1016/j.molcel.2024.08.016 Pubmed: 39232582 ]

Sort by: Download
Showing 1 - 10 of 16. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [16]

Current status

  • REL [16]

Sample type

  • Complex [16]
  • Protein [8]
  • DNA [5]
  • RNA [5]
  • Ligand [3]
  • Other [1]

Organism

  • Streptococcus pyogenes [12]
  • Streptococcus pyogenes [5]
  • Murine leukemia virus [4]
  • Guillardia theta [3]
  • Guillardia theta [2]
  • Deinococcus radiodurans [1]

EM Method

  • Single-particle [16]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [4]

Release Date

  • 2025 [8]
  • 2024 [8]

Author by name

  • Nureki O [16]
  • Hirano H [13]
  • Hoki M [13]
  • Itoh Y [13]
  • Nakagawa R [13]
  • Omura SN [13]
  • Shuto Y [13]
  • Zhang F [13]
  • Zhu S [13]
  • Hisato H [8]
  • Mizuki H [8]
  • Satoshi NO [8]
  • Yuzuru I [8]
  • Furutani Y [3]
  • Hososhima S [3]
  • Iida W [3]
  • Kandori H [3]
  • Katayama K [3]
  • Nakamura T [3]
  • Oda K [3]
  • Sano FK [3]
  • Shigemura S [3]
  • Shihoya W [3]
  • Sugimoto T [3]
  • Tanaka T [3]
  • Tsunoda SP [3]
  • Uchihashi T [3]
  • Yamashita Y [3]
  • Osamu N [1]
  • Ryoya N [1]
  • Shuto O [1]
  • Yutaro S [1]

Author by ORCID

  • Itoh Y [13]
  • Zhang F [13]
  • Nureki O [13]
  • Omura SN [13]
  • Shuto Y [13]
  • Tanaka T [3]
  • Sano FK [3]
  • Tsunoda SP [3]

Journal

  • NATURE [13]
  • MOL CELL [3]

Software

  • CRYOSPARC [3]
  • RELION [2]

Microscope

  • FEI TITAN KRIOS [16]

Electron Source

  • FIELD EMISSION GUN [16]

Film or detector model

  • GATAN K3 6K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • AlphaFold DB [8]
  • Gene Ontology [8]
  • InterPro [8]
  • PDB [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]