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grant_code:"JP21am0101071"

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [30]
  • Protein [16]
  • Ligand [9]
  • RNA [2]
  • Cellular component [1]

Organism

  • Bacillus sp. (strain ps3) [16]
  • Trichodesmium erythraeum [4]
  • Synthetic construct [4]
  • Aquifex aeolicus [3]
  • Pseudomonas fluorescens [2]
  • Sus scrofa [2]
  • Aquifex aeolicus [1]
  • Lactococcus lactis subsp. cremoris [1]
  • Hydrogenobacter thermophilus [1]
  • Thermococcus kodakarensis [1]
  • Hydrogenobacter thermophilus [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [31]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [8]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2025 [18]
  • 2024 [5]
  • 2023 [1]
  • 2022 [5]
  • 2021 [2]

Author by name

  • Adachi N [31]
  • Senda T [26]
  • Hamaguchi-suzuki N [16]
  • Marui R [16]
  • Murata T [16]
  • Noji H [16]
  • Ueno H [16]
  • Yasuda K [16]
  • Kawasaki M [9]
  • Moriya T [9]
  • Fujii A [4]
  • Miyakawa T [4]
  • Miyauchi Y [4]
  • Muramatsu T [4]
  • Tanokura M [4]
  • Yang J [4]
  • Kakuta Y [3]
  • Koyasu T [3]
  • Mayanagi K [3]
  • Teramoto T [3]
  • Abe I [2]
  • Arai R [2]
  • Awakawa T [2]
  • Biwa C [2]
  • Kawakami N [2]
  • Miyamoto K [2]
  • Mori T [2]
  • Nakamura T [2]
  • Numata T [2]
  • Ohara N [2]
  • Okuyama M [2]
  • Tagami T [2]
  • Watanabe K [2]
  • Yokogawa T [2]
  • Ikeda A [1]
  • Ikegaya M [1]
  • Ishino S [1]
  • Ishino Y [1]
  • Miyazaki T [1]
  • Nagata M [1]
  • Oki K [1]
  • Park EY [1]
  • Shirai T [1]
  • Yamagami T [1]

Author by ORCID

  • Adachi N [29]
  • Senda T [24]
  • Ueno H [16]
  • Murata T [16]
  • Noji H [16]
  • Hamaguchi-suzuki N [16]
  • Moriya T [7]
  • Tanokura M [4]
  • Miyakawa T [4]
  • Yang J [4]
  • Kakuta Y [3]
  • Teramoto T [3]
  • Arai R [2]
  • Okuyama M [2]
  • Kawakami N [2]
  • Tagami T [2]
  • Nakamura T [2]
  • Miyamoto K [2]
  • Ohara N [2]
  • Ikegaya M [1]
  • Ishino Y [1]
  • Ikeda A [1]
  • Park EY [1]
  • Kawasaki M [1]
  • Miyazaki T [1]

Journal

  • NAT COMMUN [22]
  • TO BE PUBLISHED [4]
  • ANGEW CHEM INT ED ENGL [2]
  • CHEM COMMUN (CAMB) [2]
  • J AM CHEM SOC [2]
  • J BIOL CHEM [2]
  • CHEM COMMUN [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [14]
  • GCTF [5]
  • CTFFIND [3]

Microscope

  • TFS KRIOS [17]
  • FEI TALOS ARCTICA [6]
  • FEI TITAN KRIOS [5]
  • TFS TALOS [2]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [31]

Film or detector model

  • FEI FALCON IV 4K X 4K [18]
  • FEI FALCON III 4K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [14]
  • UniProt [12]
  • AlphaFold DB [10]
  • PDBe-Kb [10]
  • ChEBI [9]
  • Gene Ontology [9]
  • Pfam [9]
  • InterPro [8]
  • ChEMBL [7]
  • DrugBank [6]
  • EMPIAR [3]
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Showing 1 - 10 of 31. Page 1 of 4
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EMD-62652
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3D View
The cryo-EM structure of porcine serum MGAM
Release date: Dec. 10, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9kz6
Q-score: 0.565

Watanabe K, Tagami T, Biwa C, Okuyama M, Kawasaki M, Adachi N, Moriya T, Senda T

To Be Published

EMD-62653
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The cryo-EM structure of porcine serum MGAM bound with Acarviosyl-maltotriose.
Release date: Dec. 10, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9kz7
Q-score: 0.654

Watanabe K, Tagami T, Biwa C, Okuyama M, Kawasaki M, Adachi N, Moriya T, Senda T

To Be Published

EMD-61339
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Engineering of ATP synthase
Release date: July 9, 2025
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9jc1
Q-score: 0.527

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61340
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Engineering of ATP synthase Fo
Release date: July 9, 2025
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 9jc2
Q-score: 0.281

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61341
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Engineering of ATP synthase single stalk1
Release date: July 9, 2025
Resolution: 2.54 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61342
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Engineering of ATP synthase single stalk2
Release date: July 9, 2025
Resolution: 2.64 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61343
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3D View
Engineering of ATP synthase single stalk3
Release date: July 9, 2025
Resolution: 2.98 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61344
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3D View
Engineering of ATP synthase Double stalks1,2
Release date: July 9, 2025
Resolution: 2.67 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61345
Download Map
3D View
Engineering of ATP synthase Double stalks1,3
Release date: July 9, 2025
Resolution: 3.23 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61346
Download Map
3D View
Engineering of ATP synthase Double stalks2,3
Release date: July 9, 2025
Resolution: 2.99 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [31]

Current status

  • REL [31]

Sample type

  • Complex [30]
  • Protein [16]
  • Ligand [9]
  • RNA [2]
  • Cellular component [1]

Organism

  • Bacillus sp. (strain ps3) [16]
  • Trichodesmium erythraeum [4]
  • Synthetic construct [4]
  • Aquifex aeolicus [3]
  • Pseudomonas fluorescens [2]
  • Sus scrofa [2]
  • Aquifex aeolicus [1]
  • Lactococcus lactis subsp. cremoris [1]
  • Hydrogenobacter thermophilus [1]
  • Thermococcus kodakarensis [1]
  • Hydrogenobacter thermophilus [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [31]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [8]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2025 [18]
  • 2024 [5]
  • 2023 [1]
  • 2022 [5]
  • 2021 [2]

Author by name

  • Adachi N [31]
  • Senda T [26]
  • Hamaguchi-suzuki N [16]
  • Marui R [16]
  • Murata T [16]
  • Noji H [16]
  • Ueno H [16]
  • Yasuda K [16]
  • Kawasaki M [9]
  • Moriya T [9]
  • Fujii A [4]
  • Miyakawa T [4]
  • Miyauchi Y [4]
  • Muramatsu T [4]
  • Tanokura M [4]
  • Yang J [4]
  • Kakuta Y [3]
  • Koyasu T [3]
  • Mayanagi K [3]
  • Teramoto T [3]
  • Abe I [2]
  • Arai R [2]
  • Awakawa T [2]
  • Biwa C [2]
  • Kawakami N [2]
  • Miyamoto K [2]
  • Mori T [2]
  • Nakamura T [2]
  • Numata T [2]
  • Ohara N [2]
  • Okuyama M [2]
  • Tagami T [2]
  • Watanabe K [2]
  • Yokogawa T [2]
  • Ikeda A [1]
  • Ikegaya M [1]
  • Ishino S [1]
  • Ishino Y [1]
  • Miyazaki T [1]
  • Nagata M [1]
  • Oki K [1]
  • Park EY [1]
  • Shirai T [1]
  • Yamagami T [1]

Author by ORCID

  • Adachi N [29]
  • Senda T [24]
  • Ueno H [16]
  • Murata T [16]
  • Noji H [16]
  • Hamaguchi-suzuki N [16]
  • Moriya T [7]
  • Tanokura M [4]
  • Miyakawa T [4]
  • Yang J [4]
  • Kakuta Y [3]
  • Teramoto T [3]
  • Arai R [2]
  • Okuyama M [2]
  • Kawakami N [2]
  • Tagami T [2]
  • Nakamura T [2]
  • Miyamoto K [2]
  • Ohara N [2]
  • Ikegaya M [1]
  • Ishino Y [1]
  • Ikeda A [1]
  • Park EY [1]
  • Kawasaki M [1]
  • Miyazaki T [1]

Journal

  • NAT COMMUN [22]
  • TO BE PUBLISHED [4]
  • ANGEW CHEM INT ED ENGL [2]
  • CHEM COMMUN (CAMB) [2]
  • J AM CHEM SOC [2]
  • J BIOL CHEM [2]
  • CHEM COMMUN [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [14]
  • GCTF [5]
  • CTFFIND [3]

Microscope

  • TFS KRIOS [17]
  • FEI TALOS ARCTICA [6]
  • FEI TITAN KRIOS [5]
  • TFS TALOS [2]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [31]

Film or detector model

  • FEI FALCON IV 4K X 4K [18]
  • FEI FALCON III 4K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • GATAN K3 6K X 4K [1]

External links

  • PDB [14]
  • UniProt [12]
  • AlphaFold DB [10]
  • PDBe-Kb [10]
  • ChEBI [9]
  • Gene Ontology [9]
  • Pfam [9]
  • InterPro [8]
  • ChEMBL [7]
  • DrugBank [6]
  • EMPIAR [3]