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grant_code:"JP21H03598"

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Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • DNA [9]
  • Protein [9]
  • Ligand [7]

Organism

  • Synthetic construct [9]
  • Homo sapiens [9]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [6]

Release Date

  • 2023 [9]

Author by name

  • Chen X [9]
  • Cui Y [9]
  • Golebiowski FM [9]
  • Hanaoka F [9]
  • Kim J [9]
  • Li CL [9]
  • Sugasawa K [9]
  • Wang H [9]
  • Yang W [9]

Author by ORCID

  • Kim J [9]
  • Sugasawa K [9]
  • Yang W [9]
  • Golebiowski FM [9]
  • Cui Y [9]

Journal

  • NATURE [9]

Software

  • RELION [9]

Microscope

  • FEI TITAN KRIOS [9]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 6K X 4K [9]

External links

  • AlphaFold DB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • ChEBI [7]
  • ChEMBL [7]
  • Complex Portal [7]
  • DrugBank [7]
  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • Pfam [7]
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EMD-29673
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Bulky DNA lesion recognition complex 3
Release date: May 3, 2023
Resolution: 3.4 Å
EM Method: Single-particle

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-29674
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Initial DNA-lesion Cy5 binding by XPC and TFIIH focused
Release date: May 3, 2023
Resolution: 4.2 Å
EM Method: Single-particle

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-27996
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Initial DNA-lesion Cy5 binding by XPC and TFIIH
Release date: April 19, 2023
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8ebs
Q-score: 0.274

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-27997
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XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion Cy5
Release date: April 19, 2023
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ebt
Q-score: 0.304

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-27998
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3D View
XPC release from Core7-XPA-DNA Cy5
Release date: April 19, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ebu
Q-score: 0.341

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-27999
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3D View
Initial DNA-lesion AP binding by XPC and TFIIH complex 1
Release date: April 19, 2023
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 8ebv
Q-score: 0.16

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-28000
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3D View
Initial DNA-lesion AP binding by XPC and TFIIH complex2
Release date: April 19, 2023
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 8ebw
Q-score: 0.208

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-28001
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3D View
XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion AP
Release date: April 19, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ebx
Q-score: 0.262

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

EMD-28002
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3D View
XPC release from Core7-XPA-DNA AP
Release date: April 19, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8eby
Q-score: 0.3

Kim J, Li CL, Chen X, Cui Y, Golebiowski FM, Wang H, Hanaoka F, Sugasawa K, Yang W

Nature (2023) 617 pp. 170-175 [ DOI: doi:10.1038/s41586-023-05959-z Pubmed: 37076618 ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • DNA [9]
  • Protein [9]
  • Ligand [7]

Organism

  • Synthetic construct [9]
  • Homo sapiens [9]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [6]

Release Date

  • 2023 [9]

Author by name

  • Chen X [9]
  • Cui Y [9]
  • Golebiowski FM [9]
  • Hanaoka F [9]
  • Kim J [9]
  • Li CL [9]
  • Sugasawa K [9]
  • Wang H [9]
  • Yang W [9]

Author by ORCID

  • Kim J [9]
  • Sugasawa K [9]
  • Yang W [9]
  • Golebiowski FM [9]
  • Cui Y [9]

Journal

  • NATURE [9]

Software

  • RELION [9]

Microscope

  • FEI TITAN KRIOS [9]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 6K X 4K [9]

External links

  • AlphaFold DB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • ChEBI [7]
  • ChEMBL [7]
  • Complex Portal [7]
  • DrugBank [7]
  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • Pfam [7]