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grant_code:"JP19fk0108161"

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]

Organism

  • Severe acute respiratory syndrome coronavirus [8]
  • Homo sapiens [7]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [1]

Release Date

  • 2021 [8]

Author by name

  • Akamatsu K [8]
  • Arakawa A [8]
  • Arase H [8]
  • Arase N [8]
  • Hirose M [8]
  • Jin H [8]
  • Kato T [8]
  • Kishida K [8]
  • Kishikawa J [8]
  • Kishikawa JI [8]
  • Kohyama M [8]
  • Li S [8]
  • Liu Y [8]
  • Matsuda M [8]
  • Matsumoto M [8]
  • Matsuoka S [8]
  • Matsuura Y [8]
  • Nakagami H [8]
  • Nakagawa A [8]
  • Nakai W [8]
  • Nakayama EE [8]
  • Nakazaki Y [8]
  • Ohmura K [8]
  • Ohshima S [8]
  • Okada M [8]
  • Okamoto T [8]
  • Ono C [8]
  • Sasai M [8]
  • Shindo Y [8]
  • Shioda T [8]
  • Soh WT [8]
  • Standley DM [8]
  • Suzuki T [8]
  • Tada A [8]
  • Tomii K [8]
  • Torii S [8]
  • Yamamoto M [8]

Author by ORCID

  • Sasai M [8]
  • Hirose M [8]
  • Li S [8]
  • Liu Y [8]
  • Soh WT [8]
  • Kishikawa JI [8]
  • Torii S [8]

Journal

  • CELL [8]

Software

  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • PDB [3]
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EMD-30915
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Apo spike protein of SARS-CoV2
Release date: June 2, 2021
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7dzw
Q-score: 0.206

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30916
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SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2
Release date: June 2, 2021
Resolution: 3.46 Å
EM Method: Single-particle

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30917
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3D View
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2 -1
Release date: June 2, 2021
Resolution: 3.53 Å
EM Method: Single-particle

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30918
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3D View
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2 -2
Release date: June 2, 2021
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 7dzx
Q-score: 0.22

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30919
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3D View
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2 -3
Release date: June 2, 2021
Resolution: 4.16 Å
EM Method: Single-particle

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30920
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3D View
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2 -4
Release date: June 2, 2021
Resolution: 3.74 Å
EM Method: Single-particle

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30921
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SARS-CoV2 spike protein with Fab fragment of enhancing antibody 2940 -1
Release date: June 2, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dzy
Q-score: -0.01

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

EMD-30922
Download Map
3D View
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 2940 -2
Release date: June 2, 2021
Resolution: 6.08 Å
EM Method: Single-particle

Liu Y, Soh WT, Kishikawa JI, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Ohshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura Y, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H

Cell (2021) 184 pp. 3452-3466.e18 [ Pubmed: 34139176 DOI: doi:10.1016/j.cell.2021.05.032 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]

Organism

  • Severe acute respiratory syndrome coronavirus [8]
  • Homo sapiens [7]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 250-500 kDa [2]
  • 500-1000 kDa [1]

Release Date

  • 2021 [8]

Author by name

  • Akamatsu K [8]
  • Arakawa A [8]
  • Arase H [8]
  • Arase N [8]
  • Hirose M [8]
  • Jin H [8]
  • Kato T [8]
  • Kishida K [8]
  • Kishikawa J [8]
  • Kishikawa JI [8]
  • Kohyama M [8]
  • Li S [8]
  • Liu Y [8]
  • Matsuda M [8]
  • Matsumoto M [8]
  • Matsuoka S [8]
  • Matsuura Y [8]
  • Nakagami H [8]
  • Nakagawa A [8]
  • Nakai W [8]
  • Nakayama EE [8]
  • Nakazaki Y [8]
  • Ohmura K [8]
  • Ohshima S [8]
  • Okada M [8]
  • Okamoto T [8]
  • Ono C [8]
  • Sasai M [8]
  • Shindo Y [8]
  • Shioda T [8]
  • Soh WT [8]
  • Standley DM [8]
  • Suzuki T [8]
  • Tada A [8]
  • Tomii K [8]
  • Torii S [8]
  • Yamamoto M [8]

Author by ORCID

  • Sasai M [8]
  • Hirose M [8]
  • Li S [8]
  • Liu Y [8]
  • Soh WT [8]
  • Kishikawa JI [8]
  • Torii S [8]

Journal

  • CELL [8]

Software

  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]

External links

  • PDB [3]