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grant_code:"JP18K14677"

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Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [2]
  • Protein [2]

Organism

  • Mus musculus [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 100-250 kDa [2]

Release Date

  • 2022 [2]
  • 2020 [1]

Author by name

  • Koyama M [3]
  • Kurumizaka H [3]
  • Negishi L [3]
  • Takizawa Y [3]
  • Fukushima Y [2]
  • Hirai S [2]
  • Komatsu T [2]
  • Kujirai T [2]
  • Miyawaki-kuwakado A [2]
  • Ohkawa Y [2]
  • Tachibana T [2]
  • Takeda Y [2]
  • Tomimatsu K [2]
  • Echigoya K [1]
  • Kuroda A [1]
  • Mizukami Y [1]
  • Shimabayashi H [1]

Author by ORCID

  • Hirai S [2]
  • Ohkawa Y [2]
  • Kurumizaka H [2]
  • Echigoya K [1]

Journal

  • NUCLEIC ACIDS RES [2]
  • SCI REP [1]

Software

  • CTFFIND [1]
  • RELION [1]

Microscope

  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]
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EMD-30631
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The mouse nucleosome structure containing H3mm18
Release date: Jan. 19, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7dbh
Q-score: 0.391

Hirai S, Tomimatsu K, Miyawaki-Kuwakado A, Takizawa Y, Komatsu T, Tachibana T, Fukushima Y, Takeda Y, Negishi L, Kujirai T, Koyama M, Ohkawa Y, Kurumizaka H

Nucleic Acids Res (2022) 50 pp. 72-91 [ Pubmed: 34929737 DOI: doi:10.1093/nar/gkab1137 ]

EMD-31882
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The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv
Release date: Jan. 19, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7vbm
Q-score: 0.506

Hirai S, Tomimatsu K, Miyawaki-Kuwakado A, Takizawa Y, Komatsu T, Tachibana T, Fukushima Y, Takeda Y, Negishi L, Kujirai T, Koyama M, Ohkawa Y, Kurumizaka H

Nucleic Acids Res (2022) 50 pp. 72-91 [ Pubmed: 34929737 DOI: doi:10.1093/nar/gkab1137 ]

EMD-30070
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3D View
Nucleosome with LIN28B distal enhancer DNA sequence
Release date: Sept. 2, 2020
Resolution: 3.6 Å
EM Method: Single-particle

Echigoya K, Koyama M, Negishi L, Takizawa Y, Mizukami Y, Shimabayashi H, Kuroda A, Kurumizaka H

Sci Rep (2020) 10 pp. 11832-11832 [ Pubmed: 32678275 DOI: doi:10.1038/s41598-020-68850-1 ]

Sort by: Download
Showing 1 - 3 of 3. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [3]

Current status

  • REL [3]

Sample type

  • Complex [3]
  • DNA [2]
  • Protein [2]

Organism

  • Mus musculus [2]
  • Homo sapiens [1]

EM Method

  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [3]

Model molecular weight

  • 100-250 kDa [2]

Release Date

  • 2022 [2]
  • 2020 [1]

Author by name

  • Koyama M [3]
  • Kurumizaka H [3]
  • Negishi L [3]
  • Takizawa Y [3]
  • Fukushima Y [2]
  • Hirai S [2]
  • Komatsu T [2]
  • Kujirai T [2]
  • Miyawaki-kuwakado A [2]
  • Ohkawa Y [2]
  • Tachibana T [2]
  • Takeda Y [2]
  • Tomimatsu K [2]
  • Echigoya K [1]
  • Kuroda A [1]
  • Mizukami Y [1]
  • Shimabayashi H [1]

Author by ORCID

  • Hirai S [2]
  • Ohkawa Y [2]
  • Kurumizaka H [2]
  • Echigoya K [1]

Journal

  • NUCLEIC ACIDS RES [2]
  • SCI REP [1]

Software

  • CTFFIND [1]
  • RELION [1]

Microscope

  • TFS KRIOS [2]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [3]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [1]
  • GATAN K3 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDB [2]
  • PDBe-Kb [2]
  • Pfam [2]
  • UniProt [2]