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grant_code:"JP17K07318"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [7]
  • Ligand [1]

Organism

  • Vaccinia virus [6]
  • Porphyromonas gingivalis [1]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2022 [6]
  • 2020 [1]

Author by name

  • Matsunami H [7]
  • Wolf M [7]
  • Hyun J [6]
  • Kim TG [6]
  • Imada K [1]
  • Matthews MM [1]
  • Nakayama K [1]
  • Okada K [1]
  • Shibata S [1]
  • Shoji M [1]

Author by ORCID

  • Matsunami H [7]
  • Wolf M [7]
  • Hyun J [6]
  • Nakayama K [1]
  • Shoji M [1]
  • Matthews MM [1]
  • Imada K [1]

Journal

  • NAT COMMUN [6]
  • NAT MICROBIOL [1]

Software

  • RELION [6]
  • CISTEM [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]

External links

  • PDBe-Kb [7]
  • UniProt [7]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • Pfam [6]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • EMPIAR [1]
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Showing 1 - 7 of 7. Page 1 of 1
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EMD-31949
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Release date: Feb. 23, 2022
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7vfd
Q-score: 0.695

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-31950
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Release date: Feb. 23, 2022
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 7vfe
Q-score: 0.642

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-31951
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Release date: Feb. 23, 2022
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7vff
Q-score: 0.444

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-31952
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Release date: Feb. 23, 2022
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7vfg
Q-score: 0.415

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-31953
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13 tubular assembly
Release date: Feb. 23, 2022
Resolution: 7.33 Å
EM Method: Helical reconstruction

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-31954
Download Map
3D View
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Release date: Feb. 23, 2022
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7vfh
Q-score: 0.371

Hyun J, Matsunami H, Kim TG, Wolf M

Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]

EMD-0724
Download Map
3D View
Raw data
EMPIAR-11015
FimA type V pilus from P.gingivalis
Release date: April 15, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6kmf
Q-score: 0.478

Shibata S, Shoji M, Okada K, Matsunami H, Matthews MM, Imada K, Nakayama K, Wolf M

Nat Microbiol (2020) 5 pp. 830-837 [ Pubmed: 32284566 DOI: doi:10.1038/s41564-020-0705-1 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • Protein [7]
  • Ligand [1]

Organism

  • Vaccinia virus [6]
  • Porphyromonas gingivalis [1]

EM Method

  • Single-particle [6]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2022 [6]
  • 2020 [1]

Author by name

  • Matsunami H [7]
  • Wolf M [7]
  • Hyun J [6]
  • Kim TG [6]
  • Imada K [1]
  • Matthews MM [1]
  • Nakayama K [1]
  • Okada K [1]
  • Shibata S [1]
  • Shoji M [1]

Author by ORCID

  • Matsunami H [7]
  • Wolf M [7]
  • Hyun J [6]
  • Nakayama K [1]
  • Shoji M [1]
  • Matthews MM [1]
  • Imada K [1]

Journal

  • NAT COMMUN [6]
  • NAT MICROBIOL [1]

Software

  • RELION [6]
  • CISTEM [2]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • FEI FALCON III 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]

External links

  • PDBe-Kb [7]
  • UniProt [7]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • Pfam [6]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
  • EMPIAR [1]