Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"GRK 2566/1"

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [16]
  • Protein [15]
  • Cell [3]
  • Ligand [1]
  • Tissue [1]

Organism

  • Mycoplasma pneumoniae [11]
  • Mycoplasma genitalium [8]
  • Mus musculus [1]

EM Method

  • Single-particle [16]
  • Subtomogram averaging [4]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]

Release Date

  • 2025 [2]
  • 2024 [6]
  • 2023 [12]

Author by name

  • Frangakis AS [20]
  • Manger S [20]
  • Sprankel L [17]
  • Scheffer MP [13]
  • Ermel UH [9]
  • Meier-credo J [9]
  • Arghittu SM [6]
  • Covino R [6]
  • Wieland K [6]
  • Bublak D [5]
  • Langer J [5]
  • Escola-gil JC [4]
  • Fita I [4]
  • Julve J [4]
  • Langer JD [4]
  • Marcos M [4]
  • Martin J [4]
  • Pinol J [4]
  • Rotllan N [4]
  • Vizarraga D [4]
  • Frangakis AF [2]
  • Keles I [2]
  • Birtasu AN [1]
  • Fakler B [1]
  • Frangakis MP [1]
  • Grahammer F [1]
  • Kocylowski MK [1]

Author by ORCID

  • Manger S [19]
  • Frangakis AS [17]
  • Sprankel L [9]
  • Meier-credo J [9]
  • Langer J [5]
  • Covino R [5]
  • Arghittu SM [5]
  • Wieland K [5]
  • Escola-gil JC [4]
  • Vizarraga D [4]
  • Langer JD [4]
  • Julve J [4]
  • Fita I [4]
  • Pinol J [4]
  • Frangakis AS [2]
  • Keles I [2]

Journal

  • NAT STRUCT MOL BIOL [9]
  • PLOS PATHOG [8]
  • SCI ADV [5]
  • TO BE PUBLISHED [2]
  • BIORXIV [1]
  • KIDNEY INT [1]

Software

  • CRYOSPARC [15]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]

External links

  • AlphaFold DB [15]
  • UniProt [15]
  • PDBe-Kb [13]
  • PDB [9]
  • InterPro [7]
  • Pfam [7]
  • Gene Ontology [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-51470
Download Map
3D View
Cryo-EM structure of essential Mycoplasma pneumoniae lipoprotein Mpn444 homotrimer
Release date: Sept. 17, 2025
Resolution: 5.4 Å
EM Method: Single-particle
Fitted PDBs: 9gnh
Q-score: 0.085

Keles I, Manger S, Frangakis AS

To Be Published

EMD-51459
Download Map
3D View
CryoEM structure of essential Mycoplasma pneumoniae lipoprotein Mpn444
Release date: Sept. 10, 2025
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9gn0
Q-score: 0.455

Keles I, Manger S, Frangakis AS

To Be Published

EMD-52069
Download Map
3D View
The molecular architecture of the murine kidney slit diaphragm revealed by cryo-electron tomography
Release date: Nov. 27, 2024
Resolution: 36.0 Å
EM Method: Subtomogram averaging

Birtasu AN, Wieland K, Ermel UH, Arghittu SM, Manger S, Kocylowski MK, Fakler B, Scheffer MP, Covino R, Grahammer F, Frangakis AS

Kidney Int (2025) 108 pp. 1045-1056 [ DOI: doi:10.1016/j.kint.2025.08.028 Pubmed: 41005566 ]

EMD-51408
Download Map
3D View
Mycoplasma pneumoniae protein P116 ectodomain in the empty conformation
Release date: Sept. 4, 2024
Resolution: 4.36 Å
EM Method: Single-particle

Manger S, Arghittu SM, Sprankel L, Meier-Credo J, Wieland K, Bublak D, Langer J, Covino R, Frangakis AS

Sci Adv (2025) 11 pp. eady4746-eady4746 [ Pubmed: 41032592 DOI: doi:10.1126/sciadv.ady4746 ]

EMD-51409
Download Map
3D View
Mycoplasma pneumoniae protein P116 ectodomain in the full conformation
Release date: Sept. 4, 2024
Resolution: 3.6 Å
EM Method: Single-particle

Manger S, Arghittu SM, Sprankel L, Meier-Credo J, Wieland K, Bublak D, Langer J, Covino R, Frangakis AS

Sci Adv (2025) 11 pp. eady4746-eady4746 [ Pubmed: 41032592 DOI: doi:10.1126/sciadv.ady4746 ]

EMD-51410
Download Map
3D View
Mycoplasma pneumoniae protein P116 truncated ectodomain aa 246-818 dimer in the empty conformation
Release date: Sept. 4, 2024
Resolution: 6.52 Å
EM Method: Single-particle

Manger S, Arghittu SM, Sprankel L, Meier-Credo J, Wieland K, Bublak D, Langer J, Covino R, Frangakis AS

Sci Adv (2025) 11 pp. eady4746-eady4746 [ Pubmed: 41032592 DOI: doi:10.1126/sciadv.ady4746 ]

EMD-51411
Download Map
3D View
Mycoplasma pneumoniae protein P116 truncated ectodomain aa 246-818 monomer in the empty conformation
Release date: Sept. 4, 2024
Resolution: 5.43 Å
EM Method: Single-particle

Manger S, Arghittu SM, Sprankel L, Meier-Credo J, Wieland K, Bublak D, Langer J, Covino R, Frangakis AS

Sci Adv (2025) 11 pp. eady4746-eady4746 [ Pubmed: 41032592 DOI: doi:10.1126/sciadv.ady4746 ]

EMD-51412
Download Map
3D View
Mycoplasma pneumoniae protein P116 truncated ectodomain aa 246-818 monomer in the empty conformation
Release date: Sept. 4, 2024
Resolution: 5.3 Å
EM Method: Single-particle

Manger S, Arghittu SM, Sprankel L, Meier-Credo J, Wieland K, Bublak D, Langer J, Covino R, Frangakis AS

Sci Adv (2025) 11 pp. eady4746-eady4746 [ Pubmed: 41032592 DOI: doi:10.1126/sciadv.ady4746 ]

EMD-17587
Download Map
3D View
Single particle cryo-EM of the P140-P110 heterodimer of Mycoplasma genitalium at 3.3 Angstrom resolution.
Release date: Nov. 1, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8pbx
Q-score: 0.467

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

EMD-17588
Download Map
3D View
Single particle cryo-EM of the P140-P110 heterodimer with an alternative conformation in the P140 stalk of Mycoplasma genitalium at a resolution of 3.7 Angstrom.
Release date: Nov. 1, 2023
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8pby
Q-score: 0.32

Sprankel L, Scheffer MP, Manger S, Ermel UH, Frangakis AS

PLoS Pathog (2023) 19 pp. e1011761-e1011761 [ Pubmed: 37939157 DOI: doi:10.1371/journal.ppat.1011761 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [16]
  • Protein [15]
  • Cell [3]
  • Ligand [1]
  • Tissue [1]

Organism

  • Mycoplasma pneumoniae [11]
  • Mycoplasma genitalium [8]
  • Mus musculus [1]

EM Method

  • Single-particle [16]
  • Subtomogram averaging [4]

Resolution

  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [3]
  • ≥ 16Å and < 20Å [2]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [3]
  • 250-500 kDa [5]
  • 500-1000 kDa [1]

Release Date

  • 2025 [2]
  • 2024 [6]
  • 2023 [12]

Author by name

  • Frangakis AS [20]
  • Manger S [20]
  • Sprankel L [17]
  • Scheffer MP [13]
  • Ermel UH [9]
  • Meier-credo J [9]
  • Arghittu SM [6]
  • Covino R [6]
  • Wieland K [6]
  • Bublak D [5]
  • Langer J [5]
  • Escola-gil JC [4]
  • Fita I [4]
  • Julve J [4]
  • Langer JD [4]
  • Marcos M [4]
  • Martin J [4]
  • Pinol J [4]
  • Rotllan N [4]
  • Vizarraga D [4]
  • Frangakis AF [2]
  • Keles I [2]
  • Birtasu AN [1]
  • Fakler B [1]
  • Frangakis MP [1]
  • Grahammer F [1]
  • Kocylowski MK [1]

Author by ORCID

  • Manger S [19]
  • Frangakis AS [17]
  • Sprankel L [9]
  • Meier-credo J [9]
  • Langer J [5]
  • Covino R [5]
  • Arghittu SM [5]
  • Wieland K [5]
  • Escola-gil JC [4]
  • Vizarraga D [4]
  • Langer JD [4]
  • Julve J [4]
  • Fita I [4]
  • Pinol J [4]
  • Frangakis AS [2]
  • Keles I [2]

Journal

  • NAT STRUCT MOL BIOL [9]
  • PLOS PATHOG [8]
  • SCI ADV [5]
  • TO BE PUBLISHED [2]
  • BIORXIV [1]
  • KIDNEY INT [1]

Software

  • CRYOSPARC [15]

Microscope

  • FEI TITAN KRIOS [19]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 BIOQUANTUM 6K X 4K [5]
  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]

External links

  • AlphaFold DB [15]
  • UniProt [15]
  • PDBe-Kb [13]
  • PDB [9]
  • InterPro [7]
  • Pfam [7]
  • Gene Ontology [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]