Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

Edit your search query here and hit Return to execute it:
grant_code:"GM124622"

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [26]
  • Ligand [21]
  • Protein [21]
  • RNA [21]
  • Cellular component [1]

Organism

  • Saccharomyces cerevisiae [26]
  • Taura syndrome virus [11]

EM Method

  • Single-particle [26]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [8]

Model molecular weight

  • 2-5 MDa [21]

Release Date

  • 2025 [5]
  • 2024 [10]
  • 2023 [8]
  • 2022 [3]

Author by name

  • Li H [26]
  • Zhao Y [26]
  • Rai J [13]
  • Yu H [3]
  • Rai Y [1]

Author by ORCID

  • Li H [22]
  • Zhao Y [15]
  • Rai J [11]
  • Zhao Y [1]

Journal

  • TO BE PUBLISHED [15]
  • SCI ADV [8]
  • STRUCTURE [3]

Microscope

  • FEI TITAN KRIOS [24]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [25]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [21]
  • ChEBI [21]
  • ChEMBL [21]
  • DrugBank [21]
  • Gene Ontology [21]
  • InterPro [21]
  • PDB [21]
  • PDBe-Kb [21]
  • Pfam [21]
  • UniProt [21]
  • EMPIAR [8]
Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download
EMD-47228
Download Map
3D View
Focused map for the 60S subunit of the hypomthylated yeast 80S from nutrient-limiting cells incubated with hygromycin B
Release date: Oct. 22, 2025
Resolution: 1.79 Å
EM Method: Single-particle

Zhao Y, Li H

To Be Published

EMD-47229
Download Map
3D View
Focused map for the body of the 40S subunit of the hypomthylated yeast 80S from nutrient-limiting cells incubated with hygromycin
Release date: Oct. 22, 2025
Resolution: 2.1 Å
EM Method: Single-particle

Zhao Y, Li H

To Be Published

EMD-47230
Download Map
3D View
Focused map for the 60S subunit of the hypomthylated yeast 80S from nutrient-limiting cells bound with Suppressor of ToM1 Stm1
Release date: Oct. 22, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Zhao Y, Li H

To Be Published

EMD-47231
Download Map
3D View
Focused map for the 60S subunit of the hypomthylated yeast 80S from high OD cells bound with E site tRNA
Release date: Oct. 22, 2025
Resolution: 3.15 Å
EM Method: Single-particle

Zhao Y, Rai J, Li H

To Be Published

EMD-47259
Download Map
3D View
Focused refined density of the head domain of the 40S domain of hypomethylated ribosome isolated from nutrient-limiting yeast incubated with hygromycin B
Release date: Oct. 15, 2025
Resolution: 1.96 Å
EM Method: Single-particle

Zhao Y, Li H

To Be Published

EMD-40990
Download Map
3D View
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
Release date: Dec. 11, 2024
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8t2x
Q-score: 0.559

Zhao Y, Li H

To Be Published

EMD-40991
Download Map
3D View
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
Release date: Dec. 11, 2024
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8t2y
Q-score: 0.615

Zhao Y, Li H

To Be Published

EMD-40992
Download Map
3D View
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
Release date: Dec. 11, 2024
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8t2z
Q-score: 0.577

Zhao Y, Rai Y, Li H

To Be Published

EMD-40993
Download Map
3D View
Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
Release date: Dec. 11, 2024
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8t30
Q-score: 0.477

Zhao Y, Li H

To Be Published

EMD-40997
Download Map
3D View
Hypomethylated yeast 80S bound with Taura syndrome virus TSV internal ribosome entry site IRES , eEF2, GDP, sordarin, and hibernating factor Los2
Release date: Dec. 11, 2024
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8t3a
Q-score: 0.451

Zhao Y, Li H

To Be Published

Sort by: Download
Showing 1 - 10 of 26. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [26]

Current status

  • REL [26]

Sample type

  • Complex [26]
  • Ligand [21]
  • Protein [21]
  • RNA [21]
  • Cellular component [1]

Organism

  • Saccharomyces cerevisiae [26]
  • Taura syndrome virus [11]

EM Method

  • Single-particle [26]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [8]

Model molecular weight

  • 2-5 MDa [21]

Release Date

  • 2025 [5]
  • 2024 [10]
  • 2023 [8]
  • 2022 [3]

Author by name

  • Li H [26]
  • Zhao Y [26]
  • Rai J [13]
  • Yu H [3]
  • Rai Y [1]

Author by ORCID

  • Li H [22]
  • Zhao Y [15]
  • Rai J [11]
  • Zhao Y [1]

Journal

  • TO BE PUBLISHED [15]
  • SCI ADV [8]
  • STRUCTURE [3]

Microscope

  • FEI TITAN KRIOS [24]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [26]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [25]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [21]
  • ChEBI [21]
  • ChEMBL [21]
  • DrugBank [21]
  • Gene Ontology [21]
  • InterPro [21]
  • PDB [21]
  • PDBe-Kb [21]
  • Pfam [21]
  • UniProt [21]
  • EMPIAR [8]