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grant_code:"GM107465"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [8]
  • RNA [8]
  • Ligand [4]

Organism

  • Escherichia coli [8]
  • Saccharomyces cerevisiae [2]
  • Escherichia coli [2]
  • Homo sapiens [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 1-2 MDa [5]
  • 2-5 MDa [3]

Release Date

  • 2022 [2]
  • 2018 [1]
  • 2017 [5]

Author by name

  • Demo G [8]
  • Korostelev AA [8]
  • Diaz-avalos R [5]
  • Grigorieff N [5]
  • Loveland AB [5]
  • Svidritskiy E [5]
  • Nudler E [3]
  • Rasouly A [3]
  • Svetlov V [3]
  • Vasilyev N [3]
  • Gao FB [2]
  • Grant T [2]
  • Lee S [2]
  • Madireddy R [2]
  • Park A [2]
  • Sousa D [2]
  • Susorov D [2]
  • Zvornicanin S [2]

Author by ORCID

  • Demo G [8]
  • Korostelev AA [8]
  • Loveland AB [5]
  • Grigorieff N [5]
  • Nudler E [3]
  • Rasouly A [3]
  • Gao FB [2]
  • Grant T [2]
  • Susorov D [2]

Journal

  • ELIFE [5]
  • NAT COMMUN [2]
  • J BIOL CHEM [1]

Software

  • FREALIGN [5]
  • FREALIGNX [1]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • DIRECT ELECTRON DE-20 5K X 3K [2]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-26033
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Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Release date: May 25, 2022
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7too
Q-score: 0.531

Loveland AB, Svidritskiy E, Susorov D, Lee S, Park A, Zvornicanin S, Demo G, Gao FB, Korostelev AA

Nat Commun (2022) 13 pp. 2776-2776 [ Pubmed: 35589706 DOI: doi:10.1038/s41467-022-30418-0 ]

EMD-26034
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Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Release date: May 25, 2022
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7top
Q-score: 0.552

Loveland AB, Svidritskiy E, Susorov D, Lee S, Park A, Zvornicanin S, Demo G, Gao FB, Korostelev AA

Nat Commun (2022) 13 pp. 2776-2776 [ Pubmed: 35589706 DOI: doi:10.1038/s41467-022-30418-0 ]

EMD-7970
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E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon
Release date: July 4, 2018
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6dnc
Q-score: 0.319

Svidritskiy E, Demo G, Korostelev AA

J Biol Chem (2018) 293 pp. 12472-12479 [ Pubmed: 29941456 DOI: doi:10.1074/jbc.AW118.003232 ]

EMD-7014
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Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state
Release date: Oct. 18, 2017
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 6awb
Q-score: 0.108

Demo G, Rasouly A, Vasilyev N, Svetlov V, Loveland AB, Diaz-Avalos R, Grigorieff N, Nudler E, Korostelev AA

eLife (2017) 6 [ DOI: doi:10.7554/eLife.28560 Pubmed: 29027901 ]

EMD-7015
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Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state
Release date: Oct. 18, 2017
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 6awc
Q-score: 0.095

Demo G, Rasouly A, Vasilyev N, Svetlov V, Loveland AB, Diaz-Avalos R, Grigorieff N, Nudler E, Korostelev AA

eLife (2017) 6 [ DOI: doi:10.7554/eLife.28560 Pubmed: 29027901 ]

EMD-7016
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Structure of 30S S1 depleted ribosomal subunit and RNA polymerase complex
Release date: Oct. 18, 2017
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 6awd
Q-score: 0.07

Demo G, Rasouly A, Vasilyev N, Svetlov V, Loveland AB, Diaz-Avalos R, Grigorieff N, Nudler E, Korostelev AA

eLife (2017) 6 [ DOI: doi:10.7554/eLife.28560 Pubmed: 29027901 ]

EMD-8521
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3.2 A cryo-EM ArfA-RF2 ribosome rescue complex Structure II
Release date: March 22, 2017
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5u9f
Q-score: 0.383

Demo G, Svidritskiy E, Madireddy R, Diaz-Avalos R, Grant T, Grigorieff N, Sousa D, Korostelev AA

eLife (2017) 6 [ Pubmed: 28300532 DOI: doi:10.7554/eLife.23687 ]

EMD-8522
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3.2 A cryo-EM ArfA-RF2 ribosome rescue complex Structure I
Release date: March 22, 2017
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5u9g
Q-score: 0.387

Demo G, Svidritskiy E, Madireddy R, Diaz-Avalos R, Grant T, Grigorieff N, Sousa D, Korostelev AA

eLife (2017) 6 [ Pubmed: 28300532 DOI: doi:10.7554/eLife.23687 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [8]
  • RNA [8]
  • Ligand [4]

Organism

  • Escherichia coli [8]
  • Saccharomyces cerevisiae [2]
  • Escherichia coli [2]
  • Homo sapiens [2]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 1-2 MDa [5]
  • 2-5 MDa [3]

Release Date

  • 2022 [2]
  • 2018 [1]
  • 2017 [5]

Author by name

  • Demo G [8]
  • Korostelev AA [8]
  • Diaz-avalos R [5]
  • Grigorieff N [5]
  • Loveland AB [5]
  • Svidritskiy E [5]
  • Nudler E [3]
  • Rasouly A [3]
  • Svetlov V [3]
  • Vasilyev N [3]
  • Gao FB [2]
  • Grant T [2]
  • Lee S [2]
  • Madireddy R [2]
  • Park A [2]
  • Sousa D [2]
  • Susorov D [2]
  • Zvornicanin S [2]

Author by ORCID

  • Demo G [8]
  • Korostelev AA [8]
  • Loveland AB [5]
  • Grigorieff N [5]
  • Nudler E [3]
  • Rasouly A [3]
  • Gao FB [2]
  • Grant T [2]
  • Susorov D [2]

Journal

  • ELIFE [5]
  • NAT COMMUN [2]
  • J BIOL CHEM [1]

Software

  • FREALIGN [5]
  • FREALIGNX [1]

Microscope

  • FEI TITAN KRIOS [6]
  • FEI TALOS ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • DIRECT ELECTRON DE-20 5K X 3K [2]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • PDBe-Kb [8]
  • UniProt [8]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • ChEBI [4]
  • ChEMBL [4]
  • DrugBank [4]