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grant_code:"Forefront of Science Award"

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Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]

Organism

  • Homo sapiens [10]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [5]

Release Date

  • 2025 [10]

Author by name

  • Ammerman A [10]
  • Cao Q [10]
  • Chen H [10]
  • Garcia BA [10]
  • Li W [10]
  • Lin Z [10]
  • Liu B [10]
  • Xu J [10]
  • Chai M [7]
  • Gross ML [7]
  • Hsu FF [7]
  • Krezel AM [7]
  • Liu S [7]
  • Saimi M [7]
  • Shen G [7]
  • Sun J [7]
  • Awasthi S [3]
  • Fan J [3]
  • Mierxiati S [3]

Author by ORCID

  • Xu J [10]
  • Liu B [10]
  • Li W [10]
  • Chen H [10]
  • Cao Q [10]
  • Sun J [7]
  • Ammerman A [7]
  • Shen G [7]
  • Gross ML [7]
  • Garcia BA [7]
  • Lin Z [3]

Journal

  • NATURE [7]
  • CELL RES [3]

Software

  • CRYOSPARC [3]

Microscope

  • TFS KRIOS [8]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [10]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • ChEMBL [10]
  • Gene Ontology [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • InterPro [7]
  • Complex Portal [5]
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EMD-48519
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Vitamin K-dependent gamma-carboxylase with Osteocalcin mutant and vitamin K hydroquinone and calcium
Release date: Oct. 8, 2025
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 9mqb
Q-score: 0.45

Cao Q, Fan J, Ammerman A, Awasthi S, Lin Z, Mierxiati S, Chen H, Xu J, Garcia BA, Liu B, Li W

Cell Res (2025) 35 pp. 735-749 [ DOI: doi:10.1038/s41422-025-01161-0 Pubmed: 40890294 ]

EMD-48520
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Vitamin K-dependent gamma-carboxylase with Osteocalcin mutant and vitamin K hydroquinone
Release date: Oct. 8, 2025
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 9mqc
Q-score: 0.493

Cao Q, Fan J, Ammerman A, Awasthi S, Lin Z, Mierxiati S, Chen H, Xu J, Garcia BA, Liu B, Li W

Cell Res (2025) 35 pp. 735-749 [ DOI: doi:10.1038/s41422-025-01161-0 Pubmed: 40890294 ]

EMD-48522
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Vitamin K-dependent gamma-carboxylase with Osteocalcin and vitamin K hydroquinone
Release date: Oct. 8, 2025
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 9mqe
Q-score: 0.396

Cao Q, Fan J, Ammerman A, Awasthi S, Lin Z, Mierxiati S, Chen H, Xu J, Garcia BA, Liu B, Li W

Cell Res (2025) 35 pp. 735-749 [ DOI: doi:10.1038/s41422-025-01161-0 Pubmed: 40890294 ]

EMD-44935
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Vitamin K-dependent gamma-carboxylase with factor IX propeptide and glutamate-rich region and with vitamin K hydroquinone
Release date: Jan. 22, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9bvk
Q-score: 0.457

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44936
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Vitamin K-dependent gamma-carboxylase with factor X propeptide and glutamate-rich region and with vitamin K hydroquinone
Release date: Jan. 22, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvl
Q-score: 0.506

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44937
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Vitamin K-dependent gamma-carboxylase with protein C propeptide and glutamate-rich region and with vitamin K hydroquinone
Release date: Jan. 22, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvm
Q-score: 0.481

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44939
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Vitamin K-dependent gamma-carboxylase in apo state
Release date: Jan. 22, 2025
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 9bvo
Q-score: 0.313

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44940
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Vitamin K-dependent gamma-carboxylase with TMG2 propeptide and glutamate-rich region and with vitamin K hydroquinone
Release date: Jan. 22, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvp
Q-score: 0.5

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44941
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Vitamin K-dependent gamma-carboxylase with TMG2 propeptide and glutamate-rich region
Release date: Jan. 22, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9bvq
Q-score: 0.499

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

EMD-44942
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Vitamin K-dependent gamma-carboxylase with factor IX propeptide and partially carboxylated glutamate-rich region and with vitamin K hydroquinone and calcium
Release date: Jan. 22, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9bvr
Q-score: 0.42

Cao Q, Ammerman A, Saimi M, Lin Z, Shen G, Chen H, Sun J, Chai M, Liu S, Hsu FF, Krezel AM, Gross ML, Xu J, Garcia BA, Liu B, Li W

Nature (2025) 639 pp. 816-824 [ Pubmed: 39880037 DOI: doi:10.1038/s41586-025-08648-1 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]

Organism

  • Homo sapiens [10]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [5]

Release Date

  • 2025 [10]

Author by name

  • Ammerman A [10]
  • Cao Q [10]
  • Chen H [10]
  • Garcia BA [10]
  • Li W [10]
  • Lin Z [10]
  • Liu B [10]
  • Xu J [10]
  • Chai M [7]
  • Gross ML [7]
  • Hsu FF [7]
  • Krezel AM [7]
  • Liu S [7]
  • Saimi M [7]
  • Shen G [7]
  • Sun J [7]
  • Awasthi S [3]
  • Fan J [3]
  • Mierxiati S [3]

Author by ORCID

  • Xu J [10]
  • Liu B [10]
  • Li W [10]
  • Chen H [10]
  • Cao Q [10]
  • Sun J [7]
  • Ammerman A [7]
  • Shen G [7]
  • Gross ML [7]
  • Garcia BA [7]
  • Lin Z [3]

Journal

  • NATURE [7]
  • CELL RES [3]

Software

  • CRYOSPARC [3]

Microscope

  • TFS KRIOS [8]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [10]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • ChEMBL [10]
  • Gene Ontology [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • InterPro [7]
  • Complex Portal [5]