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grant_code:"FOR1805"

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Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Complex [35]
  • Protein [35]
  • RNA [34]
  • Ligand [22]

Organism

  • Escherichia coli [13]
  • Escherichia coli [12]
  • Homo sapiens [7]
  • Saccharomyces cerevisiae [3]
  • Synthetic construct [2]
  • Staphylococcus aureus [1]
  • Enterococcus faecalis [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]
  • Saccharomyces cerevisiae [1]
  • Apis mellifera [1]

EM Method

  • Single-particle [35]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [21]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [18]
  • 2-5 MDa [15]
  • 5-10 MDa [1]

Release Date

  • 2021 [5]
  • 2019 [2]
  • 2018 [16]
  • 2017 [4]
  • 2016 [8]

Author by name

  • Beckmann R [16]
  • Berninghausen O [15]
  • Burger J [11]
  • Hilal T [11]
  • Loerke J [11]
  • Mielke T [11]
  • Nikolay R [11]
  • Qin B [11]
  • Spahn CMT [11]
  • Cheng J [9]
  • Rodnina MV [9]
  • Bock LV [8]
  • Grubmuller H [8]
  • Wilson DN [8]
  • Ameismeier M [7]
  • Graf M [7]
  • Huter P [7]
  • Arenz S [6]
  • Maracci C [6]
  • Nierhaus KH [6]
  • Textoris-taube K [6]
  • Amikura K [5]
  • Deuerling E [5]
  • Ficner R [5]
  • Fischer N [5]
  • Flugel T [5]
  • Konevega AL [5]
  • Neumann P [5]
  • Paleskava A [5]
  • Schmidt S [5]
  • Schroder GF [5]
  • Schwefel D [5]
  • Selbach M [5]
  • Stark H [5]
  • Ueda T [5]
  • Vieira-vieira CH [5]
  • Wang Z [5]
  • Becker T [4]
  • Novacek J [4]
  • Tesina P [4]
  • Beatrix B [3]
  • Frister JO [3]
  • Heuer A [3]
  • Peil L [3]
  • Peske F [3]
  • Starosta AL [3]
  • Tenson T [3]
  • Vaiana AC [3]
  • Wohlgemuth I [3]
  • Blanchard SC [2]
  • Juette MF [2]
  • Knorr AG [2]
  • Nguyen F [2]
  • Polikanov YS [2]
  • Schmidt C [2]
  • Abdelshahid M [1]
  • Atkinson GC [1]
  • Beckert B [1]
  • Buschauer R [1]
  • Crowe-mcauliffe C [1]
  • Florin T [1]
  • Fromont-racine M [1]
  • Hauryliuk V [1]
  • Heckel E [1]
  • Ikeuchi K [1]
  • Inada T [1]
  • Jacquier A [1]
  • Karki P [1]
  • Kater L [1]
  • Klepacki D [1]
  • Mankin AS [1]
  • Matsuo Y [1]
  • Mueller C [1]
  • Muller C [1]
  • Murina V [1]
  • Saeki Y [1]
  • Sugiyama T [1]
  • Takada H [1]
  • Tanaka K [1]
  • Vazquez-laslop N [1]

Author by ORCID

  • Qin B [11]
  • Loerke J [11]
  • Burger J [11]
  • Hilal T [11]
  • Nikolay R [11]
  • Wilson DN [8]
  • Bock LV [8]
  • Graf M [6]
  • Rodnina MV [6]
  • Maracci C [6]
  • Vieira-vieira CH [5]
  • Paleskava A [5]
  • Fischer N [5]
  • Ueda T [5]
  • Schroder GF [5]
  • Tesina P [4]
  • Novacek J [4]
  • Beckmann R [4]
  • Beatrix B [3]
  • Wohlgemuth I [3]
  • Tenson T [3]
  • Vaiana AC [3]
  • Berninghausen O [3]
  • Becker T [2]
  • Juette MF [2]
  • Blanchard SC [2]
  • Knorr AG [2]
  • Jacquier A [1]
  • Karki P [1]
  • Sugiyama T [1]
  • Matsuo Y [1]
  • Fromont-racine M [1]
  • Florin T [1]
  • Inada T [1]
  • Mankin AS [1]
  • Atkinson GC [1]
  • Saeki Y [1]
  • Ikeuchi K [1]
  • Murina V [1]
  • Takada H [1]
  • Crowe-mcauliffe C [1]
  • Vazquez-laslop N [1]
  • Hauryliuk V [1]
  • Cheng J [1]

Journal

  • MOL CELL [14]
  • NATURE [13]
  • NAT STRUCT MOL BIOL [4]
  • PNAS [3]
  • EMBO J [1]

Software

  • RELION [8]
  • SPIDER [8]
  • CISTEM [5]
  • CRYOSPARC [4]
  • FREALIGN [2]
  • CTFFIND [1]
  • GCTF [1]
  • SPDER [1]

Microscope

  • FEI TITAN KRIOS [25]
  • FEI POLARA 300 [9]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [35]

Film or detector model

  • FEI FALCON II 4K X 4K [23]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON III 4K X 4K [3]

External links

  • AlphaFold DB [35]
  • Gene Ontology [35]
  • InterPro [35]
  • PDB [35]
  • PDBe-Kb [35]
  • Pfam [35]
  • UniProt [35]
  • Complex Portal [31]
  • ChEMBL [21]
  • ChEBI [20]
  • DrugBank [20]
  • CATH [7]
  • EMPIAR [5]
  • SCOP2 [4]
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Showing 1 - 10 of 35. Page 1 of 4
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EMD-12215
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3D View
pre-50S-ObgE particle state 1
Release date: May 12, 2021
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7bl2
Q-score: 0.328

Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT

Mol Cell (2021) 81 pp. 1200-1215.e9 [ Pubmed: 33639093 DOI: doi:10.1016/j.molcel.2021.02.006 ]

EMD-12216
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3D View
pre-50S-ObgE particle state 2
Release date: May 12, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7bl3
Q-score: 0.362

Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT

Mol Cell (2021) 81 pp. 1200-1215.e9 [ Pubmed: 33639093 DOI: doi:10.1016/j.molcel.2021.02.006 ]

EMD-12217
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3D View
in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle
Release date: May 12, 2021
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7bl4
Q-score: 0.492

Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT

Mol Cell (2021) 81 pp. 1200-1215.e9 [ Pubmed: 33639093 DOI: doi:10.1016/j.molcel.2021.02.006 ]

EMD-12218
Download Map
3D View
pre-50S-ObgE particle
Release date: May 12, 2021
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7bl5
Q-score: 0.363

Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT

Mol Cell (2021) 81 pp. 1200-1215.e9 [ Pubmed: 33639093 DOI: doi:10.1016/j.molcel.2021.02.006 ]

EMD-12219
Download Map
3D View
50S-ObgE-GMPPNP particle
Release date: May 12, 2021
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7bl6
Q-score: 0.289

Nikolay R, Hilal T, Schmidt S, Qin B, Schwefel D, Vieira-Vieira CH, Mielke T, Burger J, Loerke J, Amikura K, Flugel T, Ueda T, Selbach M, Deuerling E, Spahn CMT

Mol Cell (2021) 81 pp. 1200-1215.e9 [ Pubmed: 33639093 DOI: doi:10.1016/j.molcel.2021.02.006 ]

EMD-4474
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3D View
Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
Release date: March 13, 2019
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6q8y
Q-score: 0.484

Tesina P, Heckel E, Cheng J, Fromont-Racine M, Buschauer R, Kater L, Beatrix B, Berninghausen O, Jacquier A, Becker T, Beckmann R

Nat Struct Mol Biol (2019) 26 pp. 275-280 [ DOI: doi:10.1038/s41594-019-0202-5 Pubmed: 30911188 ]

EMD-4427
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3D View
The structure of a di-ribosome disome as a unit for RQC and NGD quality control pathways recognition.
Release date: Jan. 16, 2019
Resolution: 5.3 Å
EM Method: Single-particle
Fitted PDBs: 6i7o
Q-score: 0.212

Ikeuchi K, Tesina P, Matsuo Y, Sugiyama T, Cheng J, Saeki Y, Tanaka K, Becker T, Beckmann R, Inada T

EMBO J (2019) 38 [ DOI: doi:10.15252/embj.2018100276 Pubmed: 30609991 ]

EMD-0201
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3D View
Cryo-EM structure of the ribosome-NatA complex
Release date: Dec. 19, 2018
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6hd5
Q-score: 0.083

Knorr AG, Schmidt C, Tesina P, Berninghausen O, Becker T, Beatrix B, Beckmann R

Nat Struct Mol Biol (2019) 26 pp. 35-39 [ Pubmed: 30559462 DOI: doi:10.1038/s41594-018-0165-y ]

EMD-0202
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3D View
Cryo-EM structure of the ribosome-NatA complex
Release date: Dec. 19, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6hd7
Q-score: 0.313

Knorr AG, Schmidt C, Tesina P, Berninghausen O, Becker T, Beatrix B, Beckmann R

Nat Struct Mol Biol (2019) 26 pp. 35-39 [ Pubmed: 30559462 DOI: doi:10.1038/s41594-018-0165-y ]

EMD-0176
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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Release date: Aug. 29, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ Pubmed: 30126986 DOI: doi:10.1073/pnas.1808535115 ]

Sort by: Download
Showing 1 - 10 of 35. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [35]

Current status

  • REL [35]

Sample type

  • Complex [35]
  • Protein [35]
  • RNA [34]
  • Ligand [22]

Organism

  • Escherichia coli [13]
  • Escherichia coli [12]
  • Homo sapiens [7]
  • Saccharomyces cerevisiae [3]
  • Synthetic construct [2]
  • Staphylococcus aureus [1]
  • Enterococcus faecalis [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]
  • Saccharomyces cerevisiae [1]
  • Apis mellifera [1]

EM Method

  • Single-particle [35]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [21]
  • ≥ 4Å and < 5Å [11]
  • ≥ 5Å and < 6Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [18]
  • 2-5 MDa [15]
  • 5-10 MDa [1]

Release Date

  • 2021 [5]
  • 2019 [2]
  • 2018 [16]
  • 2017 [4]
  • 2016 [8]

Author by name

  • Beckmann R [16]
  • Berninghausen O [15]
  • Burger J [11]
  • Hilal T [11]
  • Loerke J [11]
  • Mielke T [11]
  • Nikolay R [11]
  • Qin B [11]
  • Spahn CMT [11]
  • Cheng J [9]
  • Rodnina MV [9]
  • Bock LV [8]
  • Grubmuller H [8]
  • Wilson DN [8]
  • Ameismeier M [7]
  • Graf M [7]
  • Huter P [7]
  • Arenz S [6]
  • Maracci C [6]
  • Nierhaus KH [6]
  • Textoris-taube K [6]
  • Amikura K [5]
  • Deuerling E [5]
  • Ficner R [5]
  • Fischer N [5]
  • Flugel T [5]
  • Konevega AL [5]
  • Neumann P [5]
  • Paleskava A [5]
  • Schmidt S [5]
  • Schroder GF [5]
  • Schwefel D [5]
  • Selbach M [5]
  • Stark H [5]
  • Ueda T [5]
  • Vieira-vieira CH [5]
  • Wang Z [5]
  • Becker T [4]
  • Novacek J [4]
  • Tesina P [4]
  • Beatrix B [3]
  • Frister JO [3]
  • Heuer A [3]
  • Peil L [3]
  • Peske F [3]
  • Starosta AL [3]
  • Tenson T [3]
  • Vaiana AC [3]
  • Wohlgemuth I [3]
  • Blanchard SC [2]
  • Juette MF [2]
  • Knorr AG [2]
  • Nguyen F [2]
  • Polikanov YS [2]
  • Schmidt C [2]
  • Abdelshahid M [1]
  • Atkinson GC [1]
  • Beckert B [1]
  • Buschauer R [1]
  • Crowe-mcauliffe C [1]
  • Florin T [1]
  • Fromont-racine M [1]
  • Hauryliuk V [1]
  • Heckel E [1]
  • Ikeuchi K [1]
  • Inada T [1]
  • Jacquier A [1]
  • Karki P [1]
  • Kater L [1]
  • Klepacki D [1]
  • Mankin AS [1]
  • Matsuo Y [1]
  • Mueller C [1]
  • Muller C [1]
  • Murina V [1]
  • Saeki Y [1]
  • Sugiyama T [1]
  • Takada H [1]
  • Tanaka K [1]
  • Vazquez-laslop N [1]

Author by ORCID

  • Qin B [11]
  • Loerke J [11]
  • Burger J [11]
  • Hilal T [11]
  • Nikolay R [11]
  • Wilson DN [8]
  • Bock LV [8]
  • Graf M [6]
  • Rodnina MV [6]
  • Maracci C [6]
  • Vieira-vieira CH [5]
  • Paleskava A [5]
  • Fischer N [5]
  • Ueda T [5]
  • Schroder GF [5]
  • Tesina P [4]
  • Novacek J [4]
  • Beckmann R [4]
  • Beatrix B [3]
  • Wohlgemuth I [3]
  • Tenson T [3]
  • Vaiana AC [3]
  • Berninghausen O [3]
  • Becker T [2]
  • Juette MF [2]
  • Blanchard SC [2]
  • Knorr AG [2]
  • Jacquier A [1]
  • Karki P [1]
  • Sugiyama T [1]
  • Matsuo Y [1]
  • Fromont-racine M [1]
  • Florin T [1]
  • Inada T [1]
  • Mankin AS [1]
  • Atkinson GC [1]
  • Saeki Y [1]
  • Ikeuchi K [1]
  • Murina V [1]
  • Takada H [1]
  • Crowe-mcauliffe C [1]
  • Vazquez-laslop N [1]
  • Hauryliuk V [1]
  • Cheng J [1]

Journal

  • MOL CELL [14]
  • NATURE [13]
  • NAT STRUCT MOL BIOL [4]
  • PNAS [3]
  • EMBO J [1]

Software

  • RELION [8]
  • SPIDER [8]
  • CISTEM [5]
  • CRYOSPARC [4]
  • FREALIGN [2]
  • CTFFIND [1]
  • GCTF [1]
  • SPDER [1]

Microscope

  • FEI TITAN KRIOS [25]
  • FEI POLARA 300 [9]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [35]

Film or detector model

  • FEI FALCON II 4K X 4K [23]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON III 4K X 4K [3]

External links

  • AlphaFold DB [35]
  • Gene Ontology [35]
  • InterPro [35]
  • PDB [35]
  • PDBe-Kb [35]
  • Pfam [35]
  • UniProt [35]
  • Complex Portal [31]
  • ChEMBL [21]
  • ChEBI [20]
  • DrugBank [20]
  • CATH [7]
  • EMPIAR [5]
  • SCOP2 [4]