Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"F32GM140718"

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Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Complex [23]
  • DNA [12]
  • Protein [12]

Organism

  • Homo sapiens [23]
  • Synthetic construct [12]

EM Method

  • Single-particle [23]

Resolution

  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [12]

Release Date

  • 2025 [10]
  • 2024 [9]
  • 2022 [4]

Author by name

  • Freudenthal BD [23]
  • Weaver TM [23]
  • Ryan BJ [10]
  • Cordero C [9]
  • Cortez D [9]
  • Ling JA [9]
  • Mehta KPM [9]
  • Roberts SA [9]
  • Gakhar L [4]
  • Hoitsma NM [4]
  • Schnicker NJ [4]
  • Spencer JJ [4]

Author by ORCID

  • Freudenthal BD [23]
  • Weaver TM [19]
  • Ryan BJ [10]
  • Cordero C [9]
  • Mehta KPM [9]
  • Roberts SA [9]
  • Cortez D [9]
  • Ling JA [9]
  • Gakhar L [4]
  • Schnicker NJ [4]

Journal

  • NAT COMMUN [13]
  • TO BE PUBLISHED [10]

Software

  • CRYOSPARC [23]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [19]
  • GATAN K3 6K X 4K [4]

External links

  • AlphaFold DB [12]
  • Gene Ontology [12]
  • InterPro [12]
  • PDB [12]
  • PDBe-Kb [12]
  • Pfam [12]
  • UniProt [12]
Sort by: Download
Showing 1 - 10 of 23. Page 1 of 3
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EMD-47242
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3D View
Nucleosome containing a 1-nt gap at SHL-4.5
Release date: Jan. 15, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9dwf
Q-score: 0.526

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47243
Composite map
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 1, composite
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9dwg
Q-score: 0.364

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47244
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 1, consensus
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47245
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 1, Pol Beta/DNA local refine
Release date: Jan. 15, 2025
Resolution: 3.9 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47246
Composite map
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 2, composite
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9dwh
Q-score: 0.384

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47247
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 2, consensus
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47248
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 2, Pol Beta/DNA local refine
Release date: Jan. 15, 2025
Resolution: 3.6 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47249
Composite map
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 3, composite
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9dwi
Q-score: 0.405

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47250
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 3, consensus
Release date: Jan. 15, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

EMD-47251
Download Map
3D View
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 State 3, Pol B/DNA local refine
Release date: Jan. 15, 2025
Resolution: 3.5 Å
EM Method: Single-particle

Ryan BJ, Weaver TM, Freudenthal BD

To Be Published

Sort by: Download
Showing 1 - 10 of 23. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [23]

Current status

  • REL [23]

Sample type

  • Complex [23]
  • DNA [12]
  • Protein [12]

Organism

  • Homo sapiens [23]
  • Synthetic construct [12]

EM Method

  • Single-particle [23]

Resolution

  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [12]

Release Date

  • 2025 [10]
  • 2024 [9]
  • 2022 [4]

Author by name

  • Freudenthal BD [23]
  • Weaver TM [23]
  • Ryan BJ [10]
  • Cordero C [9]
  • Cortez D [9]
  • Ling JA [9]
  • Mehta KPM [9]
  • Roberts SA [9]
  • Gakhar L [4]
  • Hoitsma NM [4]
  • Schnicker NJ [4]
  • Spencer JJ [4]

Author by ORCID

  • Freudenthal BD [23]
  • Weaver TM [19]
  • Ryan BJ [10]
  • Cordero C [9]
  • Mehta KPM [9]
  • Roberts SA [9]
  • Cortez D [9]
  • Ling JA [9]
  • Gakhar L [4]
  • Schnicker NJ [4]

Journal

  • NAT COMMUN [13]
  • TO BE PUBLISHED [10]

Software

  • CRYOSPARC [23]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [23]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [19]
  • GATAN K3 6K X 4K [4]

External links

  • AlphaFold DB [12]
  • Gene Ontology [12]
  • InterPro [12]
  • PDB [12]
  • PDBe-Kb [12]
  • Pfam [12]
  • UniProt [12]