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grant_code:"F-1938"

Filter By

Current Database

  • EMDB [60]

Current status

  • REL [60]

Sample type

  • Complex [60]
  • Protein [53]
  • RNA [45]
  • DNA [36]
  • Ligand [22]

Organism

  • Streptococcus pyogenes [24]
  • Synthetic construct [17]
  • Escherichia phage lambda [15]
  • Francisella tularensis [7]
  • Vibrio cholerae [7]
  • Saccharomyces cerevisiae [6]
  • Homo sapiens [6]
  • Synechocystis sp. pcc 6803 [3]
  • Sulfuricurvum sp. pc08-66 [3]
  • (no species) [3]
  • (no species) [2]
  • Mycobacterium sp. js623 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Streptococcus pyogenes [1]
  • Caenorhabditis elegans [1]
  • Parasutterella secunda [1]
  • Haliangium ochraceum [1]
  • Alkalihalobacillus halodurans [1]
  • Desulfovibrio vulgaris [1]

EM Method

  • Single-particle [60]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [38]
  • ≥ 6Å and < 8Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [35]
  • 250-500 kDa [10]
  • 2-5 MDa [6]

Release Date

  • 2025 [10]
  • 2024 [25]
  • 2023 [3]
  • 2022 [10]
  • 2021 [2]
  • 2020 [2]
  • 2019 [6]
  • 2018 [2]

Author by name

  • Taylor DW [60]
  • Bravo JPK [44]
  • Hibshman GN [29]
  • Dangerfield TL [26]
  • Johnson KA [26]
  • Finkelstein IJ [16]
  • Hooper MM [16]
  • Zhang H [16]
  • Fregoso Ocampo R [10]
  • Zhou Y [8]
  • Ingram C [7]
  • Ramos DA [7]
  • Johnson AW [6]
  • Jung K [6]
  • Liu MS [6]
  • Mccool RS [6]
  • Musalgaonkar S [6]
  • Jackson RN [4]
  • Schwartz EA [4]
  • Alexander LM [3]
  • Beisel CL [3]
  • Brown CT [3]
  • Butterfield CN [3]
  • Das A [3]
  • Fagerlund RD [3]
  • Fineran PC [3]
  • Goltsman DSA [3]
  • Hallmark T [3]
  • Jirde SA [3]
  • Mcbride TM [3]
  • Naegle B [3]
  • Nielson S [3]
  • Nocedal I [3]
  • Ocampo RF [3]
  • Thomas NC [3]
  • Wrapp D [3]
  • Aparicio-maldonado C [2]
  • Brouns SJJ [2]
  • Nobrega FL [2]
  • Staals RHJ [2]
  • Steens JA [2]
  • Amieiro AM [1]
  • Andres AS [1]
  • Bardis A [1]
  • Barendregt A [1]
  • Brodbelt JS [1]
  • Brounds SJJ [1]
  • Chang Y [1]
  • Dickinson DJ [1]
  • Ettema TJG [1]
  • Kostlbacher S [1]
  • Kumar A [1]
  • Lee H [1]
  • O Brien R [1]
  • O Brien Re [1]
  • Patinios C [1]
  • Prinsen SHP [1]
  • Salazar CRP [1]
  • Santos IC [1]
  • Sashital DG [1]
  • Scheltema RA [1]
  • Schwartz E [1]
  • Taylor D [1]
  • Taylor HN [1]
  • Verbeke EJ [1]
  • Yi X [1]
  • Yildiz C [1]
  • Yiran C [1]
  • Van Der Oost J [1]

Author by ORCID

  • Taylor DW [57]
  • Hibshman GN [22]
  • Hooper MM [16]
  • Finkelstein IJ [16]
  • Bravo JPK [13]
  • Johnson KA [7]
  • Ramos DA [7]
  • Mccool RS [6]
  • Zhou Y [6]
  • Liu MS [6]
  • Johnson AW [6]
  • Jackson RN [4]
  • Wrapp D [3]
  • Mcbride TM [3]
  • Fagerlund RD [3]
  • Hallmark T [3]
  • Brown CT [3]
  • Alexander LM [3]
  • Beisel CL [3]
  • Dangerfield TL [3]
  • Steens JA [2]
  • Fineran PC [2]
  • Staals RHJ [2]
  • Nobrega FL [2]
  • Brouns SJJ [2]
  • Van Der Oost J [1]
  • Kostlbacher S [1]
  • Prinsen SHP [1]
  • Scheltema RA [1]
  • Salazar CRP [1]
  • Santos IC [1]
  • Ettema TJG [1]
  • Kumar A [1]
  • Patinios C [1]
  • Bardis A [1]
  • Amieiro AM [1]

Journal

  • NAT COMMUN [30]
  • NATURE [16]
  • NUCLEIC ACIDS RES [7]
  • MOL CELL [3]
  • ISCIENCE [1]
  • J BIOL CHEM [1]
  • SCIENCE [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [9]
  • CRYOSPARC [5]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [43]
  • TFS KRIOS [9]
  • TFS GLACIOS [6]
  • JEOL 2010 [1]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [60]

Film or detector model

  • GATAN K3 6K X 4K [47]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN MULTISCAN [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • PDB [52]
  • UniProt [51]
  • AlphaFold DB [48]
  • PDBe-Kb [44]
  • Pfam [38]
  • Gene Ontology [34]
  • InterPro [31]
  • ChEBI [22]
  • DrugBank [22]
  • ChEMBL [10]
  • Complex Portal [1]
Sort by: Download
Showing 1 - 10 of 60. Page 1 of 6
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Preview first 10
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EMD-48052
Download Map
3D View
FnCas9 perfect match DNA product state
Release date: Oct. 1, 2025
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9ehf
Q-score: 0.568

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-48053
Download Map
3D View
FnCas9 perfect match DNA product state no RuvC
Release date: Oct. 1, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9ehg
Q-score: 0.456

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-48054
Download Map
3D View
FnCas9 perfect match DNA non-productive state
Release date: Oct. 1, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ehh
Q-score: 0.517

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-48062
Download Map
3D View
FnCas9 perfect match DNA non-productive state no RuvC
Release date: Oct. 1, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ehr
Q-score: 0.491

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-48069
Download Map
3D View
FnCas9 16 mismatch DNA non-productive state
Release date: Oct. 1, 2025
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9ehw
Q-score: 0.496

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-48070
Download Map
3D View
FnCas9 16 mismatch DNA product state
Release date: Oct. 1, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ehx
Q-score: 0.507

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-49074
Download Map
3D View
FnCas9 scaRNA gRNA 1101 DNA non-productive state
Release date: Oct. 1, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9n6t
Q-score: 0.544

Hibshman GN, Taylor DW

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf585 Pubmed: 40613710 ]

EMD-43757
Download Map
3D View
Cas9d Effector:sgRNA Binary Complex
Release date: Jan. 15, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8w2s
Q-score: 0.389

Ocampo RF, Bravo JPK, Dangerfield TL, Nocedal I, Jirde SA, Alexander LM, Thomas NC, Das A, Nielson S, Johnson KA, Brown CT, Butterfield CN, Goltsman DSA, Taylor DW

Nat Commun (2025) 16 pp. 457-457 [ Pubmed: 39774105 DOI: doi:10.1038/s41467-024-55573-4 ]

EMD-43760
Download Map
3D View
Cas9d 6bp R-loop Seed Complex
Release date: Jan. 15, 2025
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8w2z
Q-score: 0.415

Ocampo RF, Bravo JPK, Dangerfield TL, Nocedal I, Jirde SA, Alexander LM, Thomas NC, Das A, Nielson S, Johnson KA, Brown CT, Butterfield CN, Goltsman DSA, Taylor DW

Nat Commun (2025) 16 pp. 457-457 [ Pubmed: 39774105 DOI: doi:10.1038/s41467-024-55573-4 ]

EMD-43878
Download Map
3D View
Cas9d 20bp R-loop Complex
Release date: Jan. 15, 2025
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 9auf
Q-score: 0.594

Ocampo RF, Bravo JPK, Dangerfield TL, Nocedal I, Jirde SA, Alexander LM, Thomas NC, Das A, Nielson S, Johnson KA, Brown CT, Butterfield CN, Goltsman DSA, Taylor DW

Nat Commun (2025) 16 pp. 457-457 [ Pubmed: 39774105 DOI: doi:10.1038/s41467-024-55573-4 ]

Sort by: Download
Showing 1 - 10 of 60. Page 1 of 6
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [60]

Current status

  • REL [60]

Sample type

  • Complex [60]
  • Protein [53]
  • RNA [45]
  • DNA [36]
  • Ligand [22]

Organism

  • Streptococcus pyogenes [24]
  • Synthetic construct [17]
  • Escherichia phage lambda [15]
  • Francisella tularensis [7]
  • Vibrio cholerae [7]
  • Saccharomyces cerevisiae [6]
  • Homo sapiens [6]
  • Synechocystis sp. pcc 6803 [3]
  • Sulfuricurvum sp. pc08-66 [3]
  • (no species) [3]
  • (no species) [2]
  • Mycobacterium sp. js623 [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Streptococcus pyogenes [1]
  • Caenorhabditis elegans [1]
  • Parasutterella secunda [1]
  • Haliangium ochraceum [1]
  • Alkalihalobacillus halodurans [1]
  • Desulfovibrio vulgaris [1]

EM Method

  • Single-particle [60]

Resolution

  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [38]
  • ≥ 6Å and < 8Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [35]
  • 250-500 kDa [10]
  • 2-5 MDa [6]

Release Date

  • 2025 [10]
  • 2024 [25]
  • 2023 [3]
  • 2022 [10]
  • 2021 [2]
  • 2020 [2]
  • 2019 [6]
  • 2018 [2]

Author by name

  • Taylor DW [60]
  • Bravo JPK [44]
  • Hibshman GN [29]
  • Dangerfield TL [26]
  • Johnson KA [26]
  • Finkelstein IJ [16]
  • Hooper MM [16]
  • Zhang H [16]
  • Fregoso Ocampo R [10]
  • Zhou Y [8]
  • Ingram C [7]
  • Ramos DA [7]
  • Johnson AW [6]
  • Jung K [6]
  • Liu MS [6]
  • Mccool RS [6]
  • Musalgaonkar S [6]
  • Jackson RN [4]
  • Schwartz EA [4]
  • Alexander LM [3]
  • Beisel CL [3]
  • Brown CT [3]
  • Butterfield CN [3]
  • Das A [3]
  • Fagerlund RD [3]
  • Fineran PC [3]
  • Goltsman DSA [3]
  • Hallmark T [3]
  • Jirde SA [3]
  • Mcbride TM [3]
  • Naegle B [3]
  • Nielson S [3]
  • Nocedal I [3]
  • Ocampo RF [3]
  • Thomas NC [3]
  • Wrapp D [3]
  • Aparicio-maldonado C [2]
  • Brouns SJJ [2]
  • Nobrega FL [2]
  • Staals RHJ [2]
  • Steens JA [2]
  • Amieiro AM [1]
  • Andres AS [1]
  • Bardis A [1]
  • Barendregt A [1]
  • Brodbelt JS [1]
  • Brounds SJJ [1]
  • Chang Y [1]
  • Dickinson DJ [1]
  • Ettema TJG [1]
  • Kostlbacher S [1]
  • Kumar A [1]
  • Lee H [1]
  • O Brien R [1]
  • O Brien Re [1]
  • Patinios C [1]
  • Prinsen SHP [1]
  • Salazar CRP [1]
  • Santos IC [1]
  • Sashital DG [1]
  • Scheltema RA [1]
  • Schwartz E [1]
  • Taylor D [1]
  • Taylor HN [1]
  • Verbeke EJ [1]
  • Yi X [1]
  • Yildiz C [1]
  • Yiran C [1]
  • Van Der Oost J [1]

Author by ORCID

  • Taylor DW [57]
  • Hibshman GN [22]
  • Hooper MM [16]
  • Finkelstein IJ [16]
  • Bravo JPK [13]
  • Johnson KA [7]
  • Ramos DA [7]
  • Mccool RS [6]
  • Zhou Y [6]
  • Liu MS [6]
  • Johnson AW [6]
  • Jackson RN [4]
  • Wrapp D [3]
  • Mcbride TM [3]
  • Fagerlund RD [3]
  • Hallmark T [3]
  • Brown CT [3]
  • Alexander LM [3]
  • Beisel CL [3]
  • Dangerfield TL [3]
  • Steens JA [2]
  • Fineran PC [2]
  • Staals RHJ [2]
  • Nobrega FL [2]
  • Brouns SJJ [2]
  • Van Der Oost J [1]
  • Kostlbacher S [1]
  • Prinsen SHP [1]
  • Scheltema RA [1]
  • Salazar CRP [1]
  • Santos IC [1]
  • Ettema TJG [1]
  • Kumar A [1]
  • Patinios C [1]
  • Bardis A [1]
  • Amieiro AM [1]

Journal

  • NAT COMMUN [30]
  • NATURE [16]
  • NUCLEIC ACIDS RES [7]
  • MOL CELL [3]
  • ISCIENCE [1]
  • J BIOL CHEM [1]
  • SCIENCE [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [9]
  • CRYOSPARC [5]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [43]
  • TFS KRIOS [9]
  • TFS GLACIOS [6]
  • JEOL 2010 [1]
  • JEOL 2010F [1]

Electron Source

  • FIELD EMISSION GUN [60]

Film or detector model

  • GATAN K3 6K X 4K [47]
  • GATAN K2 SUMMIT 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN MULTISCAN [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • PDB [52]
  • UniProt [51]
  • AlphaFold DB [48]
  • PDBe-Kb [44]
  • Pfam [38]
  • Gene Ontology [34]
  • InterPro [31]
  • ChEBI [22]
  • DrugBank [22]
  • ChEMBL [10]
  • Complex Portal [1]