Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"BioX Interdisciplinary Initiative Program"

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • RNA [15]

Organism

  • Severe acute respiratory syndrome coronavirus [4]
  • Bat coronavirus hku5 [4]
  • Middle east respiratory syndrome-related coronavirus [3]
  • Human coronavirus nl63 [2]
  • Human coronavirus 229e [1]
  • Severe acute respiratory syndrome coronavirus [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 0-50 kDa [8]

Release Date

  • 2024 [1]
  • 2023 [14]

Author by name

  • Chiu W [15]
  • Das R [15]
  • Huang R [15]
  • Kretsch RC [15]
  • Li S [15]
  • Nye G [15]
  • Xu L [15]
  • Zhang K [15]
  • Zheludev IN [15]
  • Zhou X [15]

Author by ORCID

  • Das R [15]
  • Zhou X [15]
  • Xu L [15]
  • Kretsch RC [15]
  • Chiu W [15]
  • Li S [3]
  • Zheludev IN [3]
  • Zhang K [3]
  • Nye G [3]
  • Huang R [3]

Journal

  • BIORXIV [14]
  • PNAS [12]

Software

  • CRYOSPARC [15]

Microscope

  • TFS KRIOS [15]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • FEI FALCON IV 4K X 4K [14]
  • GATAN K3 6K X 4K [1]

External links

  • EMPIAR [13]
  • PDB [8]
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EMD-42820
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EMPIAR-11834
SARS-CoV-2 5 proximal stem-loop 5 and 6 with SL5b extended
Release date: March 13, 2024
Resolution: 7.4 Å
EM Method: Single-particle

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42816
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EMPIAR-11815
SARS-CoV-1 5 proximal stem-loop 5
Release date: Dec. 20, 2023
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 8uyp

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42801
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Raw data
EMPIAR-11836
BtCoV-HKU5 5 proximal stem-loop 5, conformation 1
Release date: Dec. 6, 2023
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 8uye

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42802
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Raw data
EMPIAR-11836
BtCoV-HKU5 5 proximal stem-loop 5, conformation 3
Release date: Dec. 6, 2023
Resolution: 8.0 Å
EM Method: Single-particle

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42803
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HCoV-229E 5 proximal stem-loop 5
Release date: Dec. 6, 2023
Resolution: 6.5 Å
EM Method: Single-particle

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

bioRxiv (2023) [ DOI: doi:10.1101/2023.11.22.567964 Pubmed: 38076883 ]

EMD-42805
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Raw data
EMPIAR-11836
BtCoV-HKU5 5 proximal stem-loop 5, conformation 2
Release date: Dec. 6, 2023
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8uyg

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42808
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Raw data
EMPIAR-11836
BtCoV-HKU5 5 proximal stem-loop 5, conformation 4
Release date: Dec. 6, 2023
Resolution: 7.3 Å
EM Method: Single-particle
Fitted PDBs: 8uyj

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42809
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EMPIAR-11837
MERS 5 proximal stem-loop 5, conformation 1
Release date: Dec. 6, 2023
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 8uyk

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42810
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3D View
Raw data
EMPIAR-11837
MERS 5 proximal stem-loop 5, conformation 2
Release date: Dec. 6, 2023
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8uyl

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

EMD-42811
Download Map
3D View
Raw data
EMPIAR-11837
MERS 5 proximal stem-loop 5, conformation 3
Release date: Dec. 6, 2023
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 8uym

Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R

PNAS (2024) 121 pp. e2320493121-e2320493121 [ DOI: doi:10.1073/pnas.2320493121 Pubmed: 38427602 ]

Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • RNA [15]

Organism

  • Severe acute respiratory syndrome coronavirus [4]
  • Bat coronavirus hku5 [4]
  • Middle east respiratory syndrome-related coronavirus [3]
  • Human coronavirus nl63 [2]
  • Human coronavirus 229e [1]
  • Severe acute respiratory syndrome coronavirus [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [4]

Model molecular weight

  • 0-50 kDa [8]

Release Date

  • 2024 [1]
  • 2023 [14]

Author by name

  • Chiu W [15]
  • Das R [15]
  • Huang R [15]
  • Kretsch RC [15]
  • Li S [15]
  • Nye G [15]
  • Xu L [15]
  • Zhang K [15]
  • Zheludev IN [15]
  • Zhou X [15]

Author by ORCID

  • Das R [15]
  • Zhou X [15]
  • Xu L [15]
  • Kretsch RC [15]
  • Chiu W [15]
  • Li S [3]
  • Zheludev IN [3]
  • Zhang K [3]
  • Nye G [3]
  • Huang R [3]

Journal

  • BIORXIV [14]
  • PNAS [12]

Software

  • CRYOSPARC [15]

Microscope

  • TFS KRIOS [15]

Electron Source

  • FIELD EMISSION GUN [15]

Film or detector model

  • FEI FALCON IV 4K X 4K [14]
  • GATAN K3 6K X 4K [1]

External links

  • EMPIAR [13]
  • PDB [8]