Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"AS-IDR-112-04"

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Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [5]
  • Ligand [3]

Organism

  • Human coronavirus 229e [8]
  • Severe acute respiratory syndrome coronavirus [4]
  • Homo sapiens [2]
  • Aequorea victoria [1]

EM Method

  • Single-particle [12]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [2]

Release Date

  • 2025 [11]
  • 2024 [1]

Author by name

  • Hsu MF [12]
  • Hsu SD [12]
  • Hsu STD [12]
  • Chien YC [8]
  • Khoo KH [8]
  • Tsai YX [8]
  • Angata T [4]
  • Bai LY [4]
  • Chang CS [4]
  • Chang FJ [4]
  • Chang LY [4]
  • Chang YC [4]
  • Chang YH [4]
  • Chen AY [4]
  • Chen CC [4]
  • Chen WN [4]
  • Chen YH [4]
  • Chou YC [4]
  • Hsu HF [4]
  • Huang CH [4]
  • Kong WL [4]
  • Kuo Y [4]
  • Liang JJ [4]
  • Liao CC [4]
  • Lin KI [4]
  • Lin YL [4]
  • Lu MJ [4]
  • Tsai HY [4]
  • Tung CP [4]
  • Wu MH [4]
  • Yu JH [4]

Author by ORCID

  • Chien YC [8]
  • Tsai YX [8]
  • Hsu SD [8]
  • Khoo KH [8]
  • Chou YC [4]
  • Kong WL [4]
  • Wu MH [4]

Journal

  • NAT COMMUN [8]
  • JCI INSIGHT [4]

Software

  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • GATAN K3 6K X 4K [12]

External links

  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • Complex Portal [2]
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Showing 1 - 10 of 12. Page 1 of 2
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EMD-62800
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Release date: Oct. 29, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Chang YH, Hsu MF, Chen WN, Wu MH, Kong WL, Lu MJ, Huang CH, Chang FJ, Chang LY, Tsai HY, Tung CP, Yu JH, Kuo Y, Chou YC, Bai LY, Chang YC, Chen AY, Chen CC, Chen YH, Liao CC, Chang CS, Liang JJ, Lin YL, Angata T, Hsu SD, Lin KI

JCI Insight (2024) 9 [ DOI: doi:10.1172/jci.insight.179726 Pubmed: 38775156 ]

EMD-62810
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Release date: Oct. 29, 2025
Resolution: 3.2 Å
EM Method: Single-particle

Chang YH, Hsu MF, Chen WN, Wu MH, Kong WL, Lu MJ, Huang CH, Chang FJ, Chang LY, Tsai HY, Tung CP, Yu JH, Kuo Y, Chou YC, Bai LY, Chang YC, Chen AY, Chen CC, Chen YH, Liao CC, Chang CS, Liang JJ, Lin YL, Angata T, Hsu SD, Lin KI

JCI Insight (2024) 9 [ DOI: doi:10.1172/jci.insight.179726 Pubmed: 38775156 ]

EMD-37462
Composite map
Download Map
3D View
CryoEM structure of the spike protein of human CoV 229E in complex with receptor hAPN composite map
Release date: March 5, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8wde
Q-score: 0.435

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38816
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3D View
Local refinement of receptor binding domain and hinge region of single S protein
Release date: March 5, 2025
Resolution: 3.23 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38817
Download Map
3D View
Local refinement of monomeric hAPN
Release date: March 5, 2025
Resolution: 3.73 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38818
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3D View
Local refinement of dimeric hAPN and the receptor binding domain as well as the hinge region of single S protein
Release date: March 5, 2025
Resolution: 3.61 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38819
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3D View
Local refinement of monomeric hAPN and receptor binding domain of single S protein
Release date: March 5, 2025
Resolution: 3.57 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38820
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3D View
Local refinement of single HCoV-229E S protein
Release date: March 5, 2025
Resolution: 3.39 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38821
Download Map
3D View
Local refinement of monomeric hAPN and single HCoV-229E S protein
Release date: March 5, 2025
Resolution: 3.71 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

EMD-38822
Download Map
3D View
CryoEM structure of the spike protein of human CoV 229E in complex with receptor hAPN
Release date: March 5, 2025
Resolution: 4.37 Å
EM Method: Single-particle

Tsai YX, Chien YC, Hsu MF, Khoo KH, Hsu SD

Nat Commun (2025) 16 pp. 2045-2045 [ Pubmed: 40016196 DOI: doi:10.1038/s41467-025-57359-8 ]

Sort by: Download
Showing 1 - 10 of 12. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [12]

Current status

  • REL [12]

Sample type

  • Complex [12]
  • Protein [5]
  • Ligand [3]

Organism

  • Human coronavirus 229e [8]
  • Severe acute respiratory syndrome coronavirus [4]
  • Homo sapiens [2]
  • Aequorea victoria [1]

EM Method

  • Single-particle [12]

Resolution

  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [2]

Release Date

  • 2025 [11]
  • 2024 [1]

Author by name

  • Hsu MF [12]
  • Hsu SD [12]
  • Hsu STD [12]
  • Chien YC [8]
  • Khoo KH [8]
  • Tsai YX [8]
  • Angata T [4]
  • Bai LY [4]
  • Chang CS [4]
  • Chang FJ [4]
  • Chang LY [4]
  • Chang YC [4]
  • Chang YH [4]
  • Chen AY [4]
  • Chen CC [4]
  • Chen WN [4]
  • Chen YH [4]
  • Chou YC [4]
  • Hsu HF [4]
  • Huang CH [4]
  • Kong WL [4]
  • Kuo Y [4]
  • Liang JJ [4]
  • Liao CC [4]
  • Lin KI [4]
  • Lin YL [4]
  • Lu MJ [4]
  • Tsai HY [4]
  • Tung CP [4]
  • Wu MH [4]
  • Yu JH [4]

Author by ORCID

  • Chien YC [8]
  • Tsai YX [8]
  • Hsu SD [8]
  • Khoo KH [8]
  • Chou YC [4]
  • Kong WL [4]
  • Wu MH [4]

Journal

  • NAT COMMUN [8]
  • JCI INSIGHT [4]

Software

  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [9]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [12]

Film or detector model

  • GATAN K3 6K X 4K [12]

External links

  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDB [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • Complex Portal [2]