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grant_code:"AS-IDR- 110-08"

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Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Cellular component [18]
  • Protein [13]
  • Ligand [6]

Organism

  • Porcine epidemic diarrhea virus [18]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [4]

Release Date

  • 2022 [18]

Author by name

  • Chang CY [18]
  • Chang HW [18]
  • Chang YC [18]
  • Cheng YH [18]
  • Chien YC [18]
  • Draczkowski P [18]
  • Hsu SD [18]
  • Hsu STD [18]
  • Huang CY [18]
  • Khoo KH [18]
  • Tsai YX [18]
  • Wang CH [18]
  • Wang YS [18]
  • Wu YM [18]
  • Yang TJ [18]

Author by ORCID

  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Chang YC [18]
  • Huang CY [18]
  • Chien YC [18]
  • Wang YS [18]
  • Chang YC [18]
  • Tsai YX [18]
  • Hsu SD [18]
  • Draczkowski P [18]
  • Yang TJ [18]
  • Khoo KH [18]

Journal

  • NAT COMMUN [18]

Software

  • RELION [17]
  • CRYOSPARC [12]
  • CTFFIND [7]
  • DYNAMO [5]
  • MATLAB [5]
  • UCSF CHIMERA [5]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 6K X 4K [18]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
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Showing 1 - 10 of 18. Page 1 of 2
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EMD-32329
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3D View
Cryo-EM map of PEDV Pintung 52 S protein with all three protomers in the D0-down conformation determined in situ on intact viral particles.
Release date: Aug. 3, 2022
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7w6m
Q-score: 0.267

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32332
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3D View
Subtomogram averaging of PEDV Pintung 52 S protein with all three protomers in the D0-down conformation determined in situ on intact viral particles.
Release date: Aug. 3, 2022
Resolution: 19.0 Å
EM Method: Subtomogram averaging

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32333
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3D View
Subtomogram averaging of PEDV Pintung 52 S protein with one protomer in the D0-up conformation and two protomers in the D0-down conformation, determined in situ on intact viral particles
Release date: Aug. 3, 2022
Resolution: 27.0 Å
EM Method: Subtomogram averaging

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32337
Download Map
3D View
Subtomogram averaging of PEDV Pintung 52 S protein with two protomers in the D0-up conformation and one protomer in the D0-down conformation, determined in situ on intact viral particles.
Release date: Aug. 3, 2022
Resolution: 25.0 Å
EM Method: Subtomogram averaging

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32338
Download Map
3D View
Cryo-EM map of PEDV S protein with one protomer in the D0-up conformation while the other two in the D0-down conformation
Release date: Aug. 3, 2022
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 7w73
Q-score: 0.229

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32339
Download Map
3D View
Subtomogram averaging of PEDV Pintung 52 S protein with all three protomers in the D0-up conformation determined in situ on intact viral particles.
Release date: Aug. 3, 2022
Resolution: 29.0 Å
EM Method: Subtomogram averaging

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-32340
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3D View
Subtomogram averaging of PEDV Pintung 52 S protein in the postfusion form determined in situ on intact viral particles.
Release date: Aug. 3, 2022
Resolution: 31.0 Å
EM Method: Subtomogram averaging

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-33646
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3D View
Cryo-EM map of IPEC-J2 cell-derived PEDV PT52 S protein with three D0-up
Release date: Aug. 3, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7y6s
Q-score: 0.46

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-33647
Download Map
3D View
Cryo-EM map of IPEC-J2 cell-derived PEDV PT52 S protein one D0-down and two D0-up
Release date: Aug. 3, 2022
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7y6t
Q-score: 0.264

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

EMD-33648
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3D View
Symmetry-expanded and locally refined protomer structure of IPEC-J2 cell-derived PEDV PT52 S with a CTD-close conformation
Release date: Aug. 3, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7y6u
Q-score: 0.435

Huang CY, Draczkowski P, Wang YS, Chang CY, Chien YC, Cheng YH, Wu YM, Wang CH, Chang YC, Chang YC, Yang TJ, Tsai YX, Khoo KH, Chang HW, Hsu SD

Nat Commun (2022) 13 pp. 4877-4877 [ Pubmed: 35986008 DOI: doi:10.1038/s41467-022-32588-3 ]

Sort by: Download
Showing 1 - 10 of 18. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [18]

Current status

  • REL [18]

Sample type

  • Cellular component [18]
  • Protein [13]
  • Ligand [6]

Organism

  • Porcine epidemic diarrhea virus [18]

EM Method

  • Single-particle [13]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [4]

Release Date

  • 2022 [18]

Author by name

  • Chang CY [18]
  • Chang HW [18]
  • Chang YC [18]
  • Cheng YH [18]
  • Chien YC [18]
  • Draczkowski P [18]
  • Hsu SD [18]
  • Hsu STD [18]
  • Huang CY [18]
  • Khoo KH [18]
  • Tsai YX [18]
  • Wang CH [18]
  • Wang YS [18]
  • Wu YM [18]
  • Yang TJ [18]

Author by ORCID

  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Chang YC [18]
  • Huang CY [18]
  • Chien YC [18]
  • Wang YS [18]
  • Chang YC [18]
  • Tsai YX [18]
  • Hsu SD [18]
  • Draczkowski P [18]
  • Yang TJ [18]
  • Khoo KH [18]

Journal

  • NAT COMMUN [18]

Software

  • RELION [17]
  • CRYOSPARC [12]
  • CTFFIND [7]
  • DYNAMO [5]
  • MATLAB [5]
  • UCSF CHIMERA [5]

Microscope

  • FEI TITAN KRIOS [17]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 6K X 4K [18]

External links

  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDB [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]