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grant_code:"AI123498"

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Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [20]
  • Ligand [6]
  • RNA [4]

Organism

  • Porcine epidemic diarrhea virus [16]
  • Synthetic construct [3]
  • Severe acute respiratory syndrome coronavirus [2]
  • Zaire ebolavirus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [19]
  • Helical reconstruction [1]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [4]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [5]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [1]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2023 [2]
  • 2020 [14]
  • 2019 [3]

Author by name

  • Kirchdoerfer RN [19]
  • Ward AB [17]
  • Bangaru S [14]
  • Bhandari M [14]
  • Martini O [14]
  • Sewall LM [14]
  • Yoon KJ [14]
  • Anderson TK [3]
  • Coon JJ [2]
  • Hoferle PJ [2]
  • Lee KW [2]
  • Kirchdeorfer RN [1]
  • Saphire EO [1]
  • Xiao Z [1]

Author by ORCID

  • Ward AB [16]
  • Bangaru S [14]
  • Sewall LM [14]
  • Kirchdoerfer RN [3]
  • Kirchdeorfer RN [1]
  • Anderson TK [1]
  • Xiao Z [1]

Journal

  • STRUCTURE [14]
  • BIORXIV [2]
  • NAT COMMUN [2]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [12]
  • CRYOSPARC [8]

Microscope

  • FEI TECNAI SPIRIT [13]
  • FEI TALOS ARCTICA [5]
  • FEI TECNAI ARCTICA [1]
  • TFS KRIOS [1]

Electron Source

  • LAB6 [13]
  • FIELD EMISSION GUN [7]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [13]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Complex Portal [3]
  • SCOP2 [2]
Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
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EMD-44654
Download Map
3D View
SARS-CoV-2 core polymerase complex inhibited by araCTP
Release date: May 14, 2025
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9blf
Q-score: 0.518

Anderson TK, Xiao Z, Kirchdeorfer RN

To Be Published

EMD-42488
Download Map
3D View
Porcine epidemic diarrhea virus complete core polymerase complex
Release date: Nov. 15, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8urb
Q-score: 0.49

Anderson TK, Hoferle PJ, Lee KW, Coon JJ, Kirchdoerfer RN

bioRxiv (2023) [ Pubmed: 36993498 DOI: doi:10.1101/2023.03.15.532841 ]

EMD-29779
Download Map
3D View
Porcine epidemic diarrhea virus core polymerase complex
Release date: March 29, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8g6r
Q-score: 0.435

Anderson TK, Hoferle PJ, Lee KW, Coon JJ, Kirchdoerfer RN

bioRxiv (2023) [ Pubmed: 36993498 DOI: doi:10.1101/2023.03.15.532841 ]

EMD-21391
Download Map
3D View
Cryo-EM structure of porcine epidemic diarrhea virus PEDV spike protein
Release date: Feb. 26, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6vv5
Q-score: 0.474

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21392
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein, expressed in Sf9 cells and negatively stained
Release date: Feb. 26, 2020
Resolution: 13.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21393
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein, expressed in 293F cells and negatively stained
Release date: Feb. 26, 2020
Resolution: 12.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21394
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein, expressed in 293F cells with kifunensine and negatively stained
Release date: Feb. 26, 2020
Resolution: 10.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21395
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein, expressed in 293S cells and negatively stained
Release date: Feb. 26, 2020
Resolution: 19.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21396
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein with N264D mutation, expressed in 293F cells and negatively stained
Release date: Feb. 26, 2020
Resolution: 18.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

EMD-21397
Download Map
3D View
Porcine epidemic diarrhea virus PEDV spike protein, N-terminal domain deletion, expressed in Sf9 cells and negatively stained
Release date: Feb. 26, 2020
Resolution: 23.0 Å
EM Method: Single-particle

Kirchdoerfer RN, Bhandari M, Martini O, Sewall LM, Bangaru S, Yoon KJ, Ward AB

Structure (2021) 29 pp. 385-392.e5 [ DOI: doi:10.1016/j.str.2020.12.003 Pubmed: 33378641 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [20]
  • Ligand [6]
  • RNA [4]

Organism

  • Porcine epidemic diarrhea virus [16]
  • Synthetic construct [3]
  • Severe acute respiratory syndrome coronavirus [2]
  • Zaire ebolavirus [1]
  • Severe acute respiratory syndrome coronavirus [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [19]
  • Helical reconstruction [1]

Resolution

  • ≥ 3Å and < 4Å [7]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [4]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [5]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [1]
  • 2-5 MDa [1]

Release Date

  • 2025 [1]
  • 2023 [2]
  • 2020 [14]
  • 2019 [3]

Author by name

  • Kirchdoerfer RN [19]
  • Ward AB [17]
  • Bangaru S [14]
  • Bhandari M [14]
  • Martini O [14]
  • Sewall LM [14]
  • Yoon KJ [14]
  • Anderson TK [3]
  • Coon JJ [2]
  • Hoferle PJ [2]
  • Lee KW [2]
  • Kirchdeorfer RN [1]
  • Saphire EO [1]
  • Xiao Z [1]

Author by ORCID

  • Ward AB [16]
  • Bangaru S [14]
  • Sewall LM [14]
  • Kirchdoerfer RN [3]
  • Kirchdeorfer RN [1]
  • Anderson TK [1]
  • Xiao Z [1]

Journal

  • STRUCTURE [14]
  • BIORXIV [2]
  • NAT COMMUN [2]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [12]
  • CRYOSPARC [8]

Microscope

  • FEI TECNAI SPIRIT [13]
  • FEI TALOS ARCTICA [5]
  • FEI TECNAI ARCTICA [1]
  • TFS KRIOS [1]

Electron Source

  • LAB6 [13]
  • FIELD EMISSION GUN [7]

Film or detector model

  • TVIPS TEMCAM-F416 4K X 4K [13]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • Gene Ontology [7]
  • InterPro [7]
  • PDB [7]
  • PDBe-Kb [7]
  • Pfam [7]
  • UniProt [7]
  • ChEBI [6]
  • ChEMBL [6]
  • DrugBank [6]
  • Complex Portal [3]
  • SCOP2 [2]