Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!

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grant_code:"AI089728"

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Complex [32]
  • Protein [32]
  • Ligand [21]

Organism

  • Severe acute respiratory syndrome coronavirus [26]
  • Vicugna pacos [23]
  • Orthomarburgvirus marburgense [3]
  • Zaire ebolavirus [2]
  • Homo sapiens [2]
  • Sudan ebolavirus [1]

EM Method

  • Single-particle [32]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [23]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [25]
  • 500-1000 kDa [2]

Release Date

  • 2025 [6]
  • 2024 [22]
  • 2023 [4]

Author by name

  • Bu F [32]
  • Li F [32]
  • Liu B [32]
  • Ye G [32]
  • Spiller B [19]
  • Mendoza A [18]
  • Pan R [18]
  • Du L [17]
  • Perlman S [16]
  • Wadzinski BE [12]
  • Herbst M [11]
  • Wen W [11]
  • Zheng J [11]
  • Saxena D [7]
  • Turner-hubbard H [7]
  • Geng Q [4]
  • Hsueh FC [4]
  • Shang J [4]
  • Wan Y [4]
  • Wilkens R [4]
  • Yang G [4]
  • Anantpadma M [2]
  • Davey R [2]
  • Eaton B [2]
  • Morsheimer K [2]

Author by ORCID

  • Li F [20]
  • Liu B [20]
  • Ye G [5]
  • Du L [4]
  • Hsueh FC [4]
  • Pan R [4]
  • Shang J [4]
  • Perlman S [4]
  • Geng Q [4]
  • Morsheimer K [2]
  • Bu F [1]

Journal

  • TO BE PUBLISHED [12]
  • PLOS PATHOG [11]
  • ELIFE [4]
  • J VIROL [4]
  • COMMUN BIOL [1]

Software

  • CRYOSPARC [4]

Microscope

  • FEI TITAN KRIOS [27]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [32]

Film or detector model

  • GATAN K3 6K X 4K [20]
  • FEI FALCON IV 4K X 4K [7]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [29]
  • PDBe-Kb [29]
  • Pfam [29]
  • UniProt [29]
  • InterPro [27]
  • Complex Portal [26]
  • Gene Ontology [26]
  • ChEBI [21]
  • ChEMBL [21]
  • AlphaFold DB [1]
Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
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EMD-49630
Download Map
3D View
RAVV glycoprotein in complex with hNPC1-C
Release date: Dec. 31, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 9npr
Q-score: 0.334

Bu F, Ye G, Liu B, Li F

To Be Published

EMD-49631
Download Map
3D View
Ravn marburgvirus glycoprotein
Release date: Dec. 31, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9nps
Q-score: 0.471

Ye G, Bu F, Liu B, Li F

To Be Published

EMD-49632
Download Map
3D View
RAVV GP in complex with Nanosota-MB1
Release date: Dec. 31, 2025
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9npt
Q-score: 0.48

Ye G, Bu F, Liu B, Li F

To Be Published

EMD-43833
Download Map
3D View
XBB.1.5 spike/Nanosota-8 complex
Release date: Aug. 27, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9atq
Q-score: 0.347

Ye G, Bu F, Pan R

To Be Published

EMD-43834
Download Map
3D View
local refinement of XBB.1.5 spike/Nanosota-8 complex
Release date: Aug. 27, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9atr
Q-score: 0.227

Ye G, Bu F, Pan R

To Be Published

EMD-47323
Download Map
3D View
Cryo-EM structure of Sudan ebolavirus glycoprotein complexed with hNPC1-C
Release date: Feb. 5, 2025
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9dz2
Q-score: 0.358

Bu F, Ye G, Turner-Hubbard H, Herbst M, Liu B, Li F

Commun Biol (2025) 8 pp. 156-156 [ DOI: doi:10.1038/s42003-025-07613-y Pubmed: 39894818 ]

EMD-44872
Download Map
3D View
EBOV GP/Nanosota-EB1
Release date: Dec. 18, 2024
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 9bsu
Q-score: 0.463

Bu F, Ye G, Morsheimer K, Mendoza A, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Eaton B, Anantpadma M, Yang G, Liu B, Davey R, Li F

PLoS Pathog (2024) 20 pp. e1012817-e1012817 [ DOI: doi:10.1371/journal.ppat.1012817 Pubmed: 39715280 ]

EMD-44873
Download Map
3D View
EBOV GP/Nanosota-EB2 complex
Release date: Dec. 18, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9bsv
Q-score: 0.536

Bu F, Ye G, Morsheimer K, Mendoza A, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Eaton B, Anantpadma M, Yang G, Liu B, Davey R, Li F

PLoS Pathog (2024) 20 pp. e1012817-e1012817 [ DOI: doi:10.1371/journal.ppat.1012817 Pubmed: 39715280 ]

EMD-45771
Download Map
3D View
BA.5 spike/Nanosota-9 complex
Release date: Nov. 20, 2024
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9co6
Q-score: 0.402

Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F

PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ Pubmed: 39591462 DOI: doi:10.1371/journal.ppat.1012726 ]

EMD-45772
Download Map
3D View
Local refinement of BA.5 spike/Nanosota-9 complex
Release date: Nov. 20, 2024
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9co7
Q-score: 0.44

Ye G, Bu F, Saxena D, Turner-Hubbard H, Herbst M, Spiller B, Wadzinski BE, Du L, Liu B, Zheng J, Li F

PLoS Pathog (2024) 20 pp. e1012726-e1012726 [ Pubmed: 39591462 DOI: doi:10.1371/journal.ppat.1012726 ]

Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Complex [32]
  • Protein [32]
  • Ligand [21]

Organism

  • Severe acute respiratory syndrome coronavirus [26]
  • Vicugna pacos [23]
  • Orthomarburgvirus marburgense [3]
  • Zaire ebolavirus [2]
  • Homo sapiens [2]
  • Sudan ebolavirus [1]

EM Method

  • Single-particle [32]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [23]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [25]
  • 500-1000 kDa [2]

Release Date

  • 2025 [6]
  • 2024 [22]
  • 2023 [4]

Author by name

  • Bu F [32]
  • Li F [32]
  • Liu B [32]
  • Ye G [32]
  • Spiller B [19]
  • Mendoza A [18]
  • Pan R [18]
  • Du L [17]
  • Perlman S [16]
  • Wadzinski BE [12]
  • Herbst M [11]
  • Wen W [11]
  • Zheng J [11]
  • Saxena D [7]
  • Turner-hubbard H [7]
  • Geng Q [4]
  • Hsueh FC [4]
  • Shang J [4]
  • Wan Y [4]
  • Wilkens R [4]
  • Yang G [4]
  • Anantpadma M [2]
  • Davey R [2]
  • Eaton B [2]
  • Morsheimer K [2]

Author by ORCID

  • Li F [20]
  • Liu B [20]
  • Ye G [5]
  • Du L [4]
  • Hsueh FC [4]
  • Pan R [4]
  • Shang J [4]
  • Perlman S [4]
  • Geng Q [4]
  • Morsheimer K [2]
  • Bu F [1]

Journal

  • TO BE PUBLISHED [12]
  • PLOS PATHOG [11]
  • ELIFE [4]
  • J VIROL [4]
  • COMMUN BIOL [1]

Software

  • CRYOSPARC [4]

Microscope

  • FEI TITAN KRIOS [27]
  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [32]

Film or detector model

  • GATAN K3 6K X 4K [20]
  • FEI FALCON IV 4K X 4K [7]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

External links

  • PDB [29]
  • PDBe-Kb [29]
  • Pfam [29]
  • UniProt [29]
  • InterPro [27]
  • Complex Portal [26]
  • Gene Ontology [26]
  • ChEBI [21]
  • ChEMBL [21]
  • AlphaFold DB [1]